FvH4_2g24850

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012951
Physical Location & Seq
Reverse (-)
20220482 .. 20222070
1589 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24850.t1

Sequence Viewer

Length: 558 bp
ATGAAGAACCGAAACCCTAAAGACGCTGTAATCAACGGAGACAAATCGGAAGGCTCGAAATCGGTGTACAATAAGAAGAAGAACATGAAGAGATTTGGTAGGCAAGGCCGTTCACTCGAGAAATCAACTAACAGCTACTACAACCCATCTGTTATAAAGAAGAAAAGGGAGTTCTACGATAATGCGAAGCATGTGAAGAAGTATAAGAAGTTGGTAAAGCAACAGCACACTGATGTTCCATTGGCTATAAAAGCCCTCGAGGATGAGAATGAAACTGAAGAGGGTAGCAAGATGAGTAAGAATAACAAGAAGAGAAAGGATAGAGAACCACGTAATTTAATAGAAATATATGAGAAGAAGCATGAAGAGCAAGAGAAGGCAAGAATGGAGAAGGAGGCTATCTTTCAGGCAAGGAAGGAAGAAAGAGAGAAGTCTGAAGCTCGGAGGAAGGATATTAGGGAGAAGATGATGAAGAAAACACGTAAAGGCCAGCCTGTTATGAAGTACAGAATTCAACATCTTCTGGAGACTATTCAAGGCTCTATGAATAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

186

Amino Acids

22.1

Weight (kDa)

10.03

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 51 - 179 1.9e-13 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AbsI CCTCGAGG 1 cut(s) 257
AcsI RAATTY 1 cut(s) 510
AcuI CTGAAG 2 cut(s) 297, 456
AfaI GTAC 2 cut(s) 68, 506
AflIII ACRYGT 1 cut(s) 479
AgsI TTSAA 2 cut(s) 515, 536
AluBI AGCT 2 cut(s) 135, 440
AluI AGCT 2 cut(s) 135, 440
Alw26I GTCTC 2 cut(s) 33, 521
Ama87I CYCGRG 2 cut(s) 116, 257
AoxI GGCC 2 cut(s) 106, 487
ApoI RAATTY 1 cut(s) 510
AvaI CYCGRG 2 cut(s) 116, 257
BccI CCATC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 93
BcoDI GTCTC 2 cut(s) 33, 521
BmeT110I CYCGRG 2 cut(s) 116, 257
BpmI CTGGAG 1 cut(s) 545
BsaAI YACGTR 2 cut(s) 332, 482
BseGI GGATG 1 cut(s) 268
BshFI GGCC 2 cut(s) 108, 489
BsiHKCI CYCGRG 2 cut(s) 116, 257
BsmAI GTCTC 2 cut(s) 33, 521
BsnI GGCC 2 cut(s) 108, 489
BsoBI CYCGRG 2 cut(s) 116, 257
Bsp1407I TGTACA 1 cut(s) 66
BspANI GGCC 2 cut(s) 108, 489
BspQI GCTCTTC 1 cut(s) 360
BsrGI TGTACA 1 cut(s) 66
Bst6I CTCTTC 4 cut(s) 83, 273, 305, 360
BstAUI TGTACA 1 cut(s) 66
BstBAI YACGTR 2 cut(s) 332, 482
BstC8I GCNNGC 1 cut(s) 491
BstF5I GGATG 1 cut(s) 268
BstMAI GTCTC 2 cut(s) 33, 521
BstMWI GCNNNNNNNGC 2 cut(s) 251, 367
BstNSI RCATGY 1 cut(s) 194
BsuRI GGCC 2 cut(s) 108, 489
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 1 cut(s) 491
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 67, 505
CviAII CATG 3 cut(s) 85, 191, 362
CviQI GTAC 2 cut(s) 67, 505
Eam1104I CTCTTC 4 cut(s) 83, 273, 305, 360
EarI CTCTTC 4 cut(s) 83, 273, 305, 360
Eco57I CTGAAG 2 cut(s) 297, 456
Eco88I CYCGRG 2 cut(s) 116, 257
EcoRI GAATTC 1 cut(s) 510
FaeI CATG 3 cut(s) 88, 194, 365
FatI CATG 3 cut(s) 84, 190, 361
FokI GGATG 1 cut(s) 275
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 2 cut(s) 108, 489
HgaI GACGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 88, 194, 365
Hpy166II GTNNAC 2 cut(s) 67, 113
Hpy188I TCNGA 3 cut(s) 49, 436, 444
Hpy188III TCNNGA 2 cut(s) 118, 524
Hpy8I GTNNAC 2 cut(s) 67, 113
HpyAV CCTTC 5 cut(s) 44, 370, 385, 409, 442
HpyCH4IV ACGT 2 cut(s) 331, 481
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 367
HpySE526I ACGT 2 cut(s) 331, 481
Hsp92II CATG 3 cut(s) 88, 194, 365
LguI GCTCTTC 1 cut(s) 360
LpnPI CCDG 4 cut(s) 392, 503, 507, 509
MaeII ACGT 2 cut(s) 331, 481
MluCI AATT 2 cut(s) 334, 510
MnlI CCTC 5 cut(s) 253, 266, 274, 388, 438
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 251, 367
NlaIII CATG 3 cut(s) 88, 194, 365
NspI RCATGY 1 cut(s) 194
PaeR7I CTCGAG 2 cut(s) 116, 257
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 1 cut(s) 53
Ppu21I YACGTR 2 cut(s) 332, 482
PsiI TTATAA 1 cut(s) 155
PspXI VCTCGAGB 1 cut(s) 257
RsaI GTAC 2 cut(s) 68, 506
RsaNI GTAC 2 cut(s) 67, 505
RseI CAYNNNNRTG 1 cut(s) 231
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 338
SetI ASST 4 cut(s) 137, 334, 442, 484
Sfr274I CTCGAG 2 cut(s) 116, 257
SlaI CTCGAG 2 cut(s) 116, 257
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 2 cut(s) 116, 257
SmoI CTYRAG 2 cut(s) 116, 257
Sse9I AATT 2 cut(s) 334, 510
TaiI ACGT 2 cut(s) 334, 484
TaqI TCGA 3 cut(s) 56, 117, 258
TasI AATT 2 cut(s) 334, 510
TatI WGTACW 2 cut(s) 66, 504
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 235
TspDTI ATGAA 6 cut(s) 17, 101, 285, 378, 485, 515
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 1 cut(s) 235
XapI RAATTY 1 cut(s) 510
XceI RCATGY 1 cut(s) 194
XhoI CTCGAG 2 cut(s) 116, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.