RLG00000011998

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012951
Physical Location & Seq
Forward (+)
14426917 .. 14428084
1168 bp
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UTR
Exon/CDS
Intron
RLM00000011998

Sequence Viewer

Length: 546 bp
ATGAAGAATCGAAACCCAAAAGACGCTGCAATCAACAGAGAGAAATCCGACGGCTCGAAATCGGTGTACAATAAGAAGAAGAACCCGAGGAGATTTGGTTGGCGAGGCCGTTCTCTCGAGAATTCAACGAACAGCTACTACAACCCAGCCATTATAAAGAAAAAAAGGGAGTTCTACGATAATGCCAAGCACGTGAAGAAGTATAAGAAGTTGGTAAAGCAACAGCCGACAGATGTTCCATCAGCTATAATACCACTCGAGAAGAATGAAACTGAAGATGGTAGCAAGATGAGTAAGAATAACAAGAATAGAGAATCACGTAATTTAATAGAAATATATGAGAAGAAACATGAAGAGATAGAGAAGGCAAGAATGGAGAAGGAGGCTAAATTTCAGGCAAGAAAGGAAGAAAAAGAGAAGTCTGAAGCTCGGAGGAAGGCTATTAGGGAGAAGATGATGAAGAAAACGCATAAAGGTCAGCCTGTTATGAAGTACAGAATTCAACATCTTTTGGAGACTATTCAAGGCTCCATGAATAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

182

Amino Acids

21.51

Weight (kDa)

10.12

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 52 - 175 2.6e-13 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AcsI RAATTY 3 cut(s) 121, 389, 498
AcuI CTGAAG 2 cut(s) 294, 444
AcvI CACGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 68, 494
AgsI TTSAA 3 cut(s) 126, 503, 524
AluBI AGCT 3 cut(s) 135, 245, 428
AluI AGCT 3 cut(s) 135, 245, 428
Alw26I GTCTC 1 cut(s) 509
Ama87I CYCGRG 3 cut(s) 85, 116, 257
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 121, 389, 498
AvaI CYCGRG 3 cut(s) 85, 116, 257
BbrPI CACGTG 1 cut(s) 193
BbvI GCAGC 1 cut(s) 13
BccI CCATC 2 cut(s) 247, 272
BceAI ACGGC 2 cut(s) 67, 93
BcoDI GTCTC 1 cut(s) 509
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmeT110I CYCGRG 3 cut(s) 85, 116, 257
BmiI GGNNCC 1 cut(s) 529
BsaAI YACGTR 2 cut(s) 193, 320
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
BseDI CCNNGG 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 108
BsiHKCI CYCGRG 3 cut(s) 85, 116, 257
BsmAI GTCTC 1 cut(s) 509
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 3 cut(s) 85, 116, 257
Bsp1407I TGTACA 1 cut(s) 66
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 529
BsrGI TGTACA 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 86
Bst6I CTCTTC 1 cut(s) 348
BstAUI TGTACA 1 cut(s) 66
BstBAI YACGTR 2 cut(s) 193, 320
BstMAI GTCTC 1 cut(s) 509
BstV1I GCAGC 1 cut(s) 13
BsuRI GGCC 1 cut(s) 108
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 67, 493
CviAII CATG 2 cut(s) 350, 532
CviQI GTAC 2 cut(s) 67, 493
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 294, 444
Eco72I CACGTG 1 cut(s) 193
Eco88I CYCGRG 3 cut(s) 85, 116, 257
EcoRI GAATTC 2 cut(s) 121, 498
FaeI CATG 2 cut(s) 353, 535
FatI CATG 2 cut(s) 349, 531
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 1 cut(s) 32
Hin1II CATG 2 cut(s) 353, 535
HinfI GANTC 2 cut(s) 7, 314
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 49, 424, 432
Hpy188III TCNNGA 3 cut(s) 116, 118, 259
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 358, 373, 430
HpyCH4IV ACGT 2 cut(s) 192, 319
HpyCH4V TGCA 1 cut(s) 29
HpySE526I ACGT 2 cut(s) 192, 319
Hsp92II CATG 2 cut(s) 353, 535
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 3 cut(s) 159, 380, 495
Lsp1109I GCAGC 1 cut(s) 13
MaeII ACGT 2 cut(s) 192, 319
MluCI AATT 4 cut(s) 121, 322, 389, 498
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 81, 98, 376, 426
MseI TTAA 1 cut(s) 326
NlaIII CATG 2 cut(s) 353, 535
NlaIV GGNNCC 1 cut(s) 529
PaeR7I CTCGAG 2 cut(s) 116, 257
PfeI GAWTC 2 cut(s) 7, 314
PkrI GCNGC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 193
PmlI CACGTG 1 cut(s) 193
Ppu21I YACGTR 2 cut(s) 193, 320
PsiI TTATAA 1 cut(s) 155
PspCI CACGTG 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 529
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
RsaI GTAC 2 cut(s) 68, 494
RsaNI GTAC 2 cut(s) 67, 493
SaqAI TTAA 1 cut(s) 326
SatI GCNGC 1 cut(s) 27
SetI ASST 6 cut(s) 137, 195, 247, 322, 430, 478
Sfr274I CTCGAG 2 cut(s) 116, 257
SlaI CTCGAG 2 cut(s) 116, 257
SmlI CTYRAG 2 cut(s) 116, 257
SmoI CTYRAG 2 cut(s) 116, 257
Sse9I AATT 4 cut(s) 121, 322, 389, 498
TaiI ACGT 2 cut(s) 195, 322
TaqI TCGA 4 cut(s) 10, 56, 117, 258
TasI AATT 4 cut(s) 121, 322, 389, 498
TatI WGTACW 2 cut(s) 66, 492
TfiI GAWTC 2 cut(s) 7, 314
Tru1I TTAA 1 cut(s) 326
Tru9I TTAA 1 cut(s) 326
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 17, 282, 366, 473, 503
XapI RAATTY 3 cut(s) 121, 389, 498
XhoI CTCGAG 2 cut(s) 116, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.