RchiOBHm_Chr6g0292701

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012951
Physical Location & Seq
Reverse (-)
55509630 .. 55511228
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26266

Sequence Viewer

Length: 558 bp
ATGAAGAATCGAAACCCAAAAGACGCTGCAATCAACAGAGAGAAATCCGACGGCTCGAAATCGGTGTACAATAAGAAGAAGAACCCGAGGAGATTTGGTTGGCAAGGCCGTTCTCTCGAGAATTCAACGAACAGCTACTACAACCCAGCCATGATAAAGAAAAAAAGGGAGTTCTACGATAATGCCAAGCACGTGAAGAAGTATAAGAAGTTGGTAAAGCAACAGCCGACCGATGTTCCATCAGCTATAATACCACTCGAGGAGGAGAATGAAACTGAAGATGGTAGCAAGATGAGTAAGAATAACAAGAAGAGAAAAGATAGGGAATCACGTAATTTAATAGAAATATATGAGAAGAAACATGAAGAGATAGAGAAGGCAAGAATGGAGAAGGAGGCTAAATTTCAGGCCAGAAAGGAAGAAAGAGAGAAGTCTGAAGCTCGGAGGAAGGCTATTAGGGAGAAGATGATGAAGAAAACGCATAAAGGTCAGCCTGTTATGAAGTACAGAATTCAACATCTTTTGGAGACTATTCAAGGCTCCATGAATAAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

185

Amino Acids

22.07

Weight (kDa)

10.03

Isoelectric Point (pI)

60.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 52 - 179 3.7e-13 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 121, 401, 510
AcuI CTGAAG 2 cut(s) 297, 456
AcvI CACGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 68, 506
AgsI TTSAA 3 cut(s) 126, 515, 536
AluBI AGCT 3 cut(s) 135, 245, 440
AluI AGCT 3 cut(s) 135, 245, 440
Alw26I GTCTC 1 cut(s) 521
Ama87I CYCGRG 3 cut(s) 85, 116, 257
AoxI GGCC 2 cut(s) 106, 408
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 3 cut(s) 121, 401, 510
AvaI CYCGRG 3 cut(s) 85, 116, 257
BbrPI CACGTG 1 cut(s) 193
BbvI GCAGC 1 cut(s) 13
BccI CCATC 2 cut(s) 247, 275
BceAI ACGGC 2 cut(s) 67, 93
BcoDI GTCTC 1 cut(s) 521
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
BmeT110I CYCGRG 3 cut(s) 85, 116, 257
BmiI GGNNCC 1 cut(s) 541
BsaAI YACGTR 2 cut(s) 193, 332
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
BseDI CCNNGG 1 cut(s) 86
BseRI GAGGAG 3 cut(s) 103, 275, 278
BseXI GCAGC 1 cut(s) 13
BseYI CCCAGC 1 cut(s) 145
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 108, 410
BsiEI CGRYCG 1 cut(s) 231
BsiHKCI CYCGRG 3 cut(s) 85, 116, 257
BsmAI GTCTC 1 cut(s) 521
BsnI GGCC 2 cut(s) 108, 410
BsoBI CYCGRG 3 cut(s) 85, 116, 257
Bsp1407I TGTACA 1 cut(s) 66
BspANI GGCC 2 cut(s) 108, 410
BspLI GGNNCC 1 cut(s) 541
BsrGI TGTACA 1 cut(s) 66
BssECI CCNNGG 1 cut(s) 86
Bst6I CTCTTC 2 cut(s) 305, 360
BstAUI TGTACA 1 cut(s) 66
BstBAI YACGTR 2 cut(s) 193, 332
BstMAI GTCTC 1 cut(s) 521
BstMCI CGRYCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 13
BsuRI GGCC 2 cut(s) 108, 410
CseI GACGC 1 cut(s) 32
Csp6I GTAC 2 cut(s) 67, 505
CviAII CATG 3 cut(s) 151, 362, 544
CviQI GTAC 2 cut(s) 67, 505
Eam1104I CTCTTC 2 cut(s) 305, 360
EarI CTCTTC 2 cut(s) 305, 360
Eco57I CTGAAG 2 cut(s) 297, 456
Eco72I CACGTG 1 cut(s) 193
Eco88I CYCGRG 3 cut(s) 85, 116, 257
EcoRI GAATTC 2 cut(s) 121, 510
FaeI CATG 3 cut(s) 154, 365, 547
FatI CATG 3 cut(s) 150, 361, 543
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 149
HaeIII GGCC 2 cut(s) 108, 410
HgaI GACGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 154, 365, 547
HinfI GANTC 2 cut(s) 7, 326
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 3 cut(s) 49, 436, 444
Hpy188III TCNNGA 2 cut(s) 116, 118
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 370, 385, 442
HpyCH4IV ACGT 2 cut(s) 192, 331
HpyCH4V TGCA 1 cut(s) 29
HpySE526I ACGT 2 cut(s) 192, 331
Hsp92II CATG 3 cut(s) 154, 365, 547
LmnI GCTCC 1 cut(s) 545
LpnPI CCDG 4 cut(s) 159, 392, 424, 507
Lsp1109I GCAGC 1 cut(s) 13
MaeII ACGT 2 cut(s) 192, 331
MluCI AATT 4 cut(s) 121, 334, 401, 510
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 5 cut(s) 81, 253, 256, 388, 438
MseI TTAA 1 cut(s) 338
NlaIII CATG 3 cut(s) 154, 365, 547
NlaIV GGNNCC 1 cut(s) 541
PaeR7I CTCGAG 2 cut(s) 116, 257
PfeI GAWTC 2 cut(s) 7, 326
PkrI GCNGC 1 cut(s) 28
PmaCI CACGTG 1 cut(s) 193
PmlI CACGTG 1 cut(s) 193
Ppu21I YACGTR 2 cut(s) 193, 332
PspCI CACGTG 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 541
PspXI VCTCGAGB 1 cut(s) 257
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
RsaI GTAC 2 cut(s) 68, 506
RsaNI GTAC 2 cut(s) 67, 505
SaqAI TTAA 1 cut(s) 338
SatI GCNGC 1 cut(s) 27
SetI ASST 6 cut(s) 137, 195, 247, 334, 442, 490
Sfr274I CTCGAG 2 cut(s) 116, 257
SlaI CTCGAG 2 cut(s) 116, 257
SmlI CTYRAG 2 cut(s) 116, 257
SmoI CTYRAG 2 cut(s) 116, 257
Sse9I AATT 4 cut(s) 121, 334, 401, 510
TaiI ACGT 2 cut(s) 195, 334
TaqI TCGA 4 cut(s) 10, 56, 117, 258
TaqII GACCGA 1 cut(s) 245
TasI AATT 4 cut(s) 121, 334, 401, 510
TatI WGTACW 2 cut(s) 66, 504
TfiI GAWTC 2 cut(s) 7, 326
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 5 cut(s) 17, 285, 378, 485, 515
XapI RAATTY 3 cut(s) 121, 401, 510
XhoI CTCGAG 2 cut(s) 116, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.