MD03G1276600.v1.1

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012951
Physical Location & Seq
Forward (+)
35910697 .. 35912234
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1276600.v1.1.491

Sequence Viewer

Length: 699 bp
ATGATGAATCGACACCCAAAGCACGAAGAAAACAGAGAGAAATTCAACGGCTCGAGATCGAATAGCATGAAGAAGAAGAAGAAGAAGAAGAACATGAGGAGGATGGGCGGGCAAGGGCTTTCACTCGAGGCCTTCGCGAACGCCAAATCGAACAGCAGCTACTTCAACCCAGCTTTGATCAAGAAGCAGAAAGAGTTCTACAAGAATTCCAAGTATGTGAACAAGTATAAGAAGTCACTTAAGCAACAGCAGGGCAATCCTCCATTGGTGATAAGGCGCTTCGAGGAGGAGATTGAAACCGAATATGGTAAAAAGGAGGGCGGAACGGAGTATGTTAGTAAGAAGGAGAACGAGACTGAATGTGGTAGTGAAATGGAGAACGGAACTGGAGATGATAGTAGAAAGGAGAATGAAACTGGAGGTGGTATTAAGATGAGTAGGAACGACAAGAAGAAAAACAAGTACGGTGCTCGTAGTATATTCAAAGTGTATGAGATGAAACATGAAGATGAAGAGAAGGCAAGAATGGAGAGGGAGGCGATTATTCAGGCGAAGAAGGAAGAGCGAGAAAAGGCGGAAGCACGAAGGAAGTCTGCTAGAGAGAAGATGCTTAAGAAAACGCTTAAAGGTCAGCCTGTTATGAAGTACAGAATACAGCATCTTCTGGAGACTATTCAAGGTTTTTCGAAGCAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

233

Amino Acids

27.19

Weight (kDa)

9.88

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 127 - 226 1.3e-08 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 137
AciI CCGC 3 cut(s) 108, 321, 575
AcsI RAATTY 2 cut(s) 41, 205
AfaI GTAC 2 cut(s) 464, 647
AflII CTTAAG 2 cut(s) 239, 611
AgsI TTSAA 5 cut(s) 46, 166, 296, 484, 677
AluBI AGCT 2 cut(s) 159, 173
AluI AGCT 2 cut(s) 159, 173
Alw21I GWGCWC 1 cut(s) 472
Alw26I GTCTC 2 cut(s) 347, 662
Ama87I CYCGRG 2 cut(s) 52, 125
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 156
ApoI RAATTY 2 cut(s) 41, 205
Asp700I GAANNNNTTC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 686
AvaI CYCGRG 2 cut(s) 52, 125
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 1 cut(s) 168
BccI CCATC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 64
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 347, 662
BfaI CTAG 1 cut(s) 597
BfoI RGCGCY 1 cut(s) 280
BfrI CTTAAG 2 cut(s) 239, 611
BisI GCNGC 1 cut(s) 157
BlsI GCNGC 1 cut(s) 158
BmeT110I CYCGRG 2 cut(s) 52, 125
BmsI GCATC 2 cut(s) 597, 667
BpmI CTGGAG 3 cut(s) 408, 438, 686
Bpu14I TTCGAA 1 cut(s) 686
Bse1I ACTGG 2 cut(s) 391, 421
BseGI GGATG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 391, 421
BseRI GAGGAG 3 cut(s) 112, 299, 302
BseXI GCAGC 1 cut(s) 168
BseYI CCCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 137
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 472
BsiHKCI CYCGRG 2 cut(s) 52, 125
BsmAI GTCTC 2 cut(s) 347, 662
BsnI GGCC 1 cut(s) 131
BsoBI CYCGRG 2 cut(s) 52, 125
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 472
Bsp143I GATC 2 cut(s) 56, 177
Bsp68I TCGCGA 1 cut(s) 137
BspACI CCGC 3 cut(s) 108, 321, 575
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 555
BspT104I TTCGAA 1 cut(s) 686
BspTI CTTAAG 2 cut(s) 239, 611
BsrI ACTGG 2 cut(s) 391, 421
BssMI GATC 2 cut(s) 56, 177
Bst4CI ACNGT 1 cut(s) 467
Bst6I CTCTTC 2 cut(s) 507, 555
BstAFI CTTAAG 2 cut(s) 239, 611
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 110
BstF5I GGATG 1 cut(s) 108
BstFNI CGCG 1 cut(s) 137
BstH2I RGCGCY 1 cut(s) 280
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 2 cut(s) 59, 180
BstMAI GTCTC 2 cut(s) 347, 662
BstMBI GATC 2 cut(s) 56, 177
BstUI CGCG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 168
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 1 cut(s) 108
BtuMI TCGCGA 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 110
CfoI GCGC 1 cut(s) 279
Csp6I GTAC 2 cut(s) 463, 646
CviAII CATG 3 cut(s) 67, 94, 503
CviJI RGCY 6 cut(s) 51, 118, 131, 159, 173, 634
CviKI_1 RGCY 6 cut(s) 51, 118, 131, 159, 173, 634
CviQI GTAC 2 cut(s) 463, 646
DpnI GATC 2 cut(s) 58, 179
DpnII GATC 2 cut(s) 56, 177
Eam1104I CTCTTC 2 cut(s) 507, 555
EarI CTCTTC 2 cut(s) 507, 555
EciI GGCGGA 2 cut(s) 336, 590
Eco147I AGGCCT 1 cut(s) 131
Eco88I CYCGRG 2 cut(s) 52, 125
EcoRI GAATTC 1 cut(s) 205
FaeI CATG 3 cut(s) 70, 97, 506
FatI CATG 3 cut(s) 66, 93, 502
FauI CCCGC 1 cut(s) 101
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 1 cut(s) 157
FokI GGATG 1 cut(s) 115
Fsp4HI GCNGC 1 cut(s) 157
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 278
GluI GCNGC 1 cut(s) 157
GsaI CCCAGC 1 cut(s) 173
GsuI CTGGAG 3 cut(s) 408, 438, 686
HaeII RGCGCY 1 cut(s) 280
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 279
Hin1II CATG 3 cut(s) 70, 97, 506
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HinfI GANTC 1 cut(s) 7
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 220
Hpy188III TCNNGA 4 cut(s) 54, 136, 181, 665
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 5 cut(s) 142, 337, 511, 550, 579
HpyCH4III ACNGT 1 cut(s) 467
Hsp92II CATG 3 cut(s) 70, 97, 506
HspAI GCGC 1 cut(s) 277
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 2 cut(s) 56, 177
LguI GCTCTTC 1 cut(s) 555
LpnPI CCDG 7 cut(s) 183, 236, 372, 402, 533, 648, 650
Lsp1109I GCAGC 1 cut(s) 168
LweI GCATC 2 cut(s) 597, 667
MaeI CTAG 1 cut(s) 597
MaeIII GTNAC 1 cut(s) 234
MalI GATC 2 cut(s) 58, 179
MboI GATC 2 cut(s) 56, 177
MhlI GDGCHC 1 cut(s) 472
MluCI AATT 2 cut(s) 41, 205
MroXI GAANNNNTTC 1 cut(s) 194
MseI TTAA 4 cut(s) 240, 429, 612, 624
MslI CAYNNNNRTG 1 cut(s) 507
MspCI CTTAAG 2 cut(s) 239, 611
MvnI CGCG 1 cut(s) 137
NdeII GATC 2 cut(s) 56, 177
NlaIII CATG 3 cut(s) 70, 97, 506
NmuCI GTSAC 1 cut(s) 234
NruI TCGCGA 1 cut(s) 137
NspV TTCGAA 1 cut(s) 686
PaeR7I CTCGAG 2 cut(s) 52, 125
PceI AGGCCT 1 cut(s) 131
PciSI GCTCTTC 1 cut(s) 555
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 169
PspXI VCTCGAGB 1 cut(s) 125
PsrI GAACNNNNNNTAC 2 cut(s) 143, 175
RruI TCGCGA 1 cut(s) 137
RsaI GTAC 2 cut(s) 464, 647
RsaNI GTAC 2 cut(s) 463, 646
RseI CAYNNNNRTG 1 cut(s) 507
SapI GCTCTTC 1 cut(s) 555
SaqAI TTAA 4 cut(s) 240, 429, 612, 624
SatI GCNGC 1 cut(s) 157
Sau3AI GATC 2 cut(s) 56, 177
SduI GDGCHC 1 cut(s) 472
SetI ASST 5 cut(s) 161, 175, 424, 631, 682
SfaNI GCATC 2 cut(s) 597, 667
Sfr274I CTCGAG 2 cut(s) 52, 125
SfuI TTCGAA 1 cut(s) 686
SlaI CTCGAG 2 cut(s) 52, 125
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 4 cut(s) 52, 125, 239, 611
SmoI CTYRAG 4 cut(s) 52, 125, 239, 611
Sse9I AATT 2 cut(s) 41, 205
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 3 cut(s) 108, 321, 575
SspMI CTAG 1 cut(s) 597
StuI AGGCCT 1 cut(s) 131
TaaI ACNGT 1 cut(s) 467
TaqI TCGA 7 cut(s) 10, 53, 59, 126, 149, 282, 686
TasI AATT 2 cut(s) 41, 205
TatI WGTACW 1 cut(s) 645
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 4 cut(s) 240, 429, 612, 624
Tru9I TTAA 4 cut(s) 240, 429, 612, 624
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 1 cut(s) 156
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 7 cut(s) 20, 83, 426, 512, 519, 525, 656
TspGWI ACGGA 2 cut(s) 341, 396
Vha464I CTTAAG 2 cut(s) 239, 611
XapI RAATTY 2 cut(s) 41, 205
XhoI CTCGAG 2 cut(s) 52, 125
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.