AT4G03205

coproporphyrinogen oxidase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011336
Physical Location & Seq
Forward (+)
1412785 .. 1414902
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03205.1

Sequence Viewer

Length: 702 bp
ATGGCGTCTCACTCTTCGACTCTCTTCACTTCTCCTTCTTCCTTCATTCTCTTCTCTTCTCATCGTCTCAAATCTTCTCCGAATTACTTCACTTACCACTTTCCTCGTTCCGTAAAGAGACCACATTTCGACTTGCGATGCTCAGTCTCAATCGAGAAAGAAGTTCCGGAAACAGAAAGACCTTTCACTTTCCTCAGAGTCTCCGACGGCGATCAAACTCAATCTTCTTCTTATTCGGTTAGGGCTCGTTTCGAGAAAATGATAAGAACTGCTCAAGATAAAGTCTGTGAAGCCATTGAAGCAGTCGAAGAAGGTCCTAAATTCAAGGAAGATGTTTGGTCTCGACCCGGTGGAGGTGGTGGAATCAGTCGTATTTTGCAAGACGGAAATGTATGGGAGAAAGCTGGAGTTAATGTCTCTGTGATTTATGGTGTTATGCCTCCTGAAGCTTATAGAGCTGCTAAAGCTGCCACGTCTGAGCAAAAACCTGGTCCGATTCCGTTCTTTGCCGCTGGAACCAGCTCGGTTTTGCATCCTCAGAACCCTTTTGCTCCGACTCTGCATTTCAATTACCGCTATTTCGAGACCGATGCTCCAAAGGATGTTCCTGGAGCTCCGAGGCAATGGTGGTTCGGTGGTGGGACTGACTTCACACCTGCTTACATCTTTGAAGAAGACGTCAAGCACTTTCATTCGGTTTAA

Protein Analysis

233

Amino Acids

26.13

Weight (kDa)

7.1

Isoelectric Point (pI)

57.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coprogen_oxidas PF01218 84 - 232 8e-54 Coproporphyrinogen III oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03475 AT4G03205 AT4G03205
fragaria_vesca FvH4_6g39170
malus_domestica MD09G1144600.v1.1 MD17G1131200.v1.1
prunus_persica Prupe.3G183400_v2.0.a1
pyrus_communis pycom09g06400 pycom17g12400
rosa_chinensis RchiOBHm_Chr2g0153001
rosa_laevigata RLG00000020666
rosa_multiflora Rmu_sc0000218.1_g000004 Rmu_sc0000218.1_g000005
rosa_roxburghii Rroxscaffold_2G00095310
rosa_rugosa Rorug02G0436700
rosa_samantha Rh2AG498700 Rh2BG510000 Rh2CG485000 Rh2DG521600
rosa_wichuraiana Rw2G040930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 664
AatII GACGTC 1 cut(s) 681
Acc36I ACCTGC 1 cut(s) 664
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 2 cut(s) 510, 574
AcsI RAATTY 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 2 cut(s) 5, 678
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 4 cut(s) 299, 325, 568, 671
AjiI CACGTC 1 cut(s) 474
AjnI CCWGG 2 cut(s) 487, 607
AluBI AGCT 6 cut(s) 404, 449, 458, 467, 522, 614
AluI AGCT 6 cut(s) 404, 449, 458, 467, 522, 614
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 8 cut(s) 12, 71, 112, 151, 205, 345, 421, 578
Aor13HI TCCGGA 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 458, 467
ApoI RAATTY 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 314, 491
AsuC2I CCSGG 1 cut(s) 348
AvaII GGWCC 2 cut(s) 314, 491
BanII GRGCYC 2 cut(s) 247, 616
BbsI GAAGAC 1 cut(s) 681
Bbv12I GWGCWC 1 cut(s) 616
BbvI GCAGC 2 cut(s) 445, 454
BceAI ACGGC 1 cut(s) 223
BcgI CGANNNNNNTGC 2 cut(s) 572, 606
BciT130I CCWGG 2 cut(s) 489, 609
BcnI CCSGG 1 cut(s) 348
BcoDI GTCTC 8 cut(s) 12, 71, 112, 151, 205, 345, 421, 578
BfuAI ACCTGC 1 cut(s) 664
BisI GCNGC 3 cut(s) 459, 468, 510
BlsI GCNGC 3 cut(s) 460, 469, 511
Bme1390I CCNGG 3 cut(s) 348, 489, 609
Bme18I GGWCC 2 cut(s) 314, 491
BmgBI CACGTC 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 314, 491
BmiI GGNNCC 1 cut(s) 517
BmrFI CCNGG 3 cut(s) 348, 489, 609
BmsI GCATC 3 cut(s) 128, 541, 580
BpiI GAAGAC 1 cut(s) 681
BpmI CTGGAG 2 cut(s) 426, 630
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 348
BsaHI GRCGYC 2 cut(s) 5, 678
BsaI GGTCTC 3 cut(s) 112, 345, 578
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 166
BsaXI ACNNNNNCTCC 4 cut(s) 399, 429, 577, 607
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 629
BseAI TCCGGA 1 cut(s) 166
BseBI CCWGG 2 cut(s) 489, 609
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 2 cut(s) 532, 607
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMI GCAATG 1 cut(s) 629
BseMII CTCAG 4 cut(s) 156, 208, 468, 551
BseXI GCAGC 2 cut(s) 445, 454
BsiHKAI GWGCWC 1 cut(s) 616
BsiSI CCGG 2 cut(s) 167, 348
BslFI GGGAC 1 cut(s) 655
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 8 cut(s) 12, 71, 112, 151, 205, 345, 421, 578
BsmBI CGTCTC 2 cut(s) 12, 71
BsmFI GGGAC 1 cut(s) 655
Bso31I GGTCTC 3 cut(s) 112, 345, 578
Bsp1286I GDGCHC 2 cut(s) 247, 616
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 1 cut(s) 211
BspACI CCGC 2 cut(s) 510, 574
BspCNI CTCAG 4 cut(s) 155, 207, 469, 550
BspEI TCCGGA 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 664
BspTNI GGTCTC 3 cut(s) 112, 345, 578
BsrDI GCAATG 1 cut(s) 629
BssECI CCNNGG 1 cut(s) 617
BssMI GATC 1 cut(s) 211
BssNI GRCGYC 2 cut(s) 5, 678
Bst2UI CCWGG 2 cut(s) 489, 609
Bst6I CTCTTC 4 cut(s) 19, 29, 56, 61
BstACI GRCGYC 2 cut(s) 5, 678
BstDEI CTNAG 4 cut(s) 142, 194, 477, 537
BstF5I GGATG 2 cut(s) 532, 607
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 8 cut(s) 12, 71, 112, 151, 205, 345, 421, 578
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 4 cut(s) 299, 455, 464, 467
BstNI CCWGG 2 cut(s) 489, 609
BstSCI CCNGG 3 cut(s) 346, 487, 607
BstV1I GCAGC 2 cut(s) 445, 454
BstV2I GAAGAC 1 cut(s) 681
BtgZI GCGATG 1 cut(s) 151
BtrI CACGTC 1 cut(s) 474
BtsCI GGATG 2 cut(s) 532, 607
BveI ACCTGC 1 cut(s) 664
Cfr13I GGNCC 2 cut(s) 314, 491
CsiI ACCWGGT 1 cut(s) 487
CviJI RGCY 8 cut(s) 245, 293, 404, 449, 458, 467, 522, 614
CviKI_1 RGCY 8 cut(s) 245, 293, 404, 449, 458, 467, 522, 614
DdeI CTNAG 4 cut(s) 142, 194, 477, 537
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 4 cut(s) 19, 29, 56, 61
EarI CTCTTC 4 cut(s) 19, 29, 56, 61
Ecl136II GAGCTC 1 cut(s) 614
Eco24I GRGCYC 2 cut(s) 247, 616
Eco31I GGTCTC 3 cut(s) 112, 345, 578
Eco47I GGWCC 2 cut(s) 314, 491
Eco53kI GAGCTC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 487, 607
EcoT38I GRGCYC 2 cut(s) 247, 616
Esp3I CGTCTC 2 cut(s) 12, 71
FaiI YATR 4 cut(s) 394, 429, 437, 453
FaqI GGGAC 1 cut(s) 655
Fnu4HI GCNGC 3 cut(s) 459, 468, 510
FokI GGATG 2 cut(s) 519, 614
FriOI GRGCYC 2 cut(s) 247, 616
Fsp4HI GCNGC 3 cut(s) 459, 468, 510
GluI GCNGC 3 cut(s) 459, 468, 510
GsuI CTGGAG 2 cut(s) 426, 630
HapII CCGG 2 cut(s) 167, 348
Hin1I GRCGYC 2 cut(s) 5, 678
HindIII AAGCTT 1 cut(s) 447
HinfI GANTC 5 cut(s) 19, 198, 363, 496, 556
HpaII CCGG 2 cut(s) 167, 348
Hpy188I TCNGA 8 cut(s) 81, 197, 205, 478, 495, 540, 555, 618
Hpy188III TCNNGA 7 cut(s) 154, 167, 253, 275, 342, 443, 583
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 3 cut(s) 45, 52, 305
HpyCH4IV ACGT 2 cut(s) 473, 678
HpyCH4V TGCA 3 cut(s) 379, 532, 562
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 455, 464, 467
HpyF3I CTNAG 4 cut(s) 142, 194, 477, 537
HpySE526I ACGT 2 cut(s) 473, 678
Hsp92I GRCGYC 2 cut(s) 5, 678
Kpn2I TCCGGA 1 cut(s) 166
Kzo9I GATC 1 cut(s) 211
LmnI GCTCC 4 cut(s) 556, 598, 611, 619
Lsp1109I GCAGC 2 cut(s) 445, 454
LweI GCATC 3 cut(s) 128, 541, 580
MabI ACCWGGT 1 cut(s) 487
MaeII ACGT 2 cut(s) 473, 678
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MhlI GDGCHC 2 cut(s) 247, 616
MluCI AATT 3 cut(s) 82, 320, 568
MlyI GAGTC 3 cut(s) 13, 207, 550
MmeI TCCRAC 2 cut(s) 228, 578
MnlI CCTC 6 cut(s) 114, 203, 347, 450, 546, 612
MroI TCCGGA 1 cut(s) 166
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 411, 700
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 2 cut(s) 167, 348
MspR9I CCNGG 3 cut(s) 348, 489, 609
MvaI CCWGG 2 cut(s) 489, 609
MwoI GCNNNNNNNGC 4 cut(s) 299, 455, 464, 467
NciI CCSGG 1 cut(s) 348
NdeII GATC 1 cut(s) 211
NlaIV GGNNCC 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 664
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 363, 496
PfoI TCCNGGA 1 cut(s) 607
PkrI GCNGC 3 cut(s) 460, 469, 511
PleI GAGTC 3 cut(s) 13, 206, 550
PpsI GAGTC 3 cut(s) 13, 206, 550
PpuMI RGGWCCY 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 314
Psp6I CCWGG 2 cut(s) 487, 607
PspGI CCWGG 2 cut(s) 487, 607
PspN4I GGNNCC 1 cut(s) 517
PspPI GGNCC 2 cut(s) 314, 491
PspPPI RGGWCCY 1 cut(s) 314
SacI GAGCTC 1 cut(s) 616
SaqAI TTAA 2 cut(s) 411, 700
SatI GCNGC 3 cut(s) 459, 468, 510
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 2 cut(s) 314, 491
SchI GAGTC 3 cut(s) 13, 207, 550
ScrFI CCNGG 3 cut(s) 348, 489, 609
SduI GDGCHC 2 cut(s) 247, 616
SexAI ACCWGGT 1 cut(s) 487
SfaNI GCATC 3 cut(s) 128, 541, 580
SinI GGWCC 2 cut(s) 314, 491
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 82, 320, 568
SsiI CCGC 2 cut(s) 510, 574
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 3 cut(s) 346, 487, 607
TaiI ACGT 2 cut(s) 476, 681
TaqI TCGA 7 cut(s) 17, 129, 153, 252, 306, 343, 582
TaqII GACCGA 1 cut(s) 602
TasI AATT 3 cut(s) 82, 320, 568
TauI GCSGC 1 cut(s) 512
TfiI GAWTC 2 cut(s) 363, 496
Tru1I TTAA 2 cut(s) 411, 700
Tru9I TTAA 2 cut(s) 411, 700
TseI GCWGC 2 cut(s) 458, 467
TspDTI ATGAA 2 cut(s) 34, 680
TspGWI ACGGA 3 cut(s) 100, 399, 489
VpaK11BI GGWCC 2 cut(s) 314, 491
XapI RAATTY 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 86
ZraI GACGTC 1 cut(s) 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.