MD17G1131200.v1.1

Coproporphyrinogen-III oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
11575028 .. 11578504
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1131200.v1.1.491

Sequence Viewer

Length: 1167 bp
ATGCCACCGCCGGCGGCGCTCTCAGCTTCCTCCTCCTTCACTCTCCTCTCCCCACCTCCTTCCCCAAAACCAAAGCTCCCGCCTTTCTCCGCCAGAAAACACTCTTTCGCCATTAACCCCCGTCGCCACTCACTCCACTCCGCCCCCTCCTCCGCCGTCCGATGCGCCGTCATCGAGAAAGAGACTCCCGAGGCCCACCGCCCCGCCACCTTCCTCCGCGAGAACTCCTCCTCGTCCTCCGTCCGGGGCCGGTTCGAGAAAATGATAAGAGACGCCCAGGACACCGTCTGCGCCGCCATTGAGGCCGCTGACGGCGGTGCCACGTTTAAAGAGGACGTGTGGTCGAGACCCGGCGGCGGCGGAGGCATCAGCAGGGTTCTCCAGGACGGCGCCGTTTGGGAGAAGGCTGGTGTCAATGTCTCTGTTGTGTACGGCGTTATGCCTCCCGAGGCCTACCGAGCTGCCAAGGGCGCCGCCGCAGCTGATCACAAGCCTGGCCCGGTTCCCTTCTTCGCCGCCGGAATTAGCTCGGTTTTGCATCCGAAGAACCCGTTTGCGCCTACTTTGCATTTCAATTATCGGTATTTCGAAACCGATGCTCCACAAGATGCTCCCGGAGCACCTAGGCAATGGTGGTTTGGGGGTGGAACTGACTTGACACCTGCTTATATTTTTGAGGAGGATGTTAAGCATTTTCATTCAGTTCAGAAAAGTGCTTGCGACAAATTTGATCCTGCCTTCTATCCTCGGTTCAAGAAATGGTGTGATGATTATTTCTATATCAAGCATCGAGATGAGAGGCGAGGACTTGGAGGAATATTTTTTGACGATCTAAACGATTATGATCAGGAGATGCTTCTTTCCTTTGCCACAGAATGTGCAAATTCTGTGGTCCCTGCTTACCTGCCAATTATAGAGAAAAGAAAGGACCTGCCATTTACAGATGAGCAGAAGGCATGGCAGCAATTGCGAAGAGGGCGCTACGTTGAGTTCAATTTGGTTTATGATCGCGGAACAACTTTTGGACTAAAGACAGGAGGTCGAATTGAGAGTATTCTCGTCTCTCTTCCACTGACTTCTCGATGGGAATATGACCATAAACCAGAAGAGGGAAGCGAAGAATGGAAACTATTAGATGCTTGCATCAACCCAAAGGAATGGGTTTAA

Protein Analysis

389

Amino Acids

43.34

Weight (kDa)

6.84

Isoelectric Point (pI)

63.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coprogen_oxidas PF01218 85 - 387 1.2e-136 Coproporphyrinogen III oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011336)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 670
Acc36I ACCTGC 3 cut(s) 670, 912, 939
AccB1I GGYRCC 3 cut(s) 317, 389, 470
AccII CGCG 2 cut(s) 219, 1011
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 2 cut(s) 725, 883
AcyI GRCGYC 3 cut(s) 273, 390, 471
AfaI GTAC 1 cut(s) 431
AfiI CCNNNNNNNGG 3 cut(s) 243, 356, 1109
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 574, 754, 994
AhdI GACNNNNNGTC 2 cut(s) 340, 1038
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 3 cut(s) 276, 381, 493
AluBI AGCT 5 cut(s) 26, 76, 461, 482, 528
AluI AGCT 5 cut(s) 26, 76, 461, 482, 528
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 5 cut(s) 176, 264, 340, 424, 1066
AlwI GGATC 1 cut(s) 725
Ama87I CYCGRG 2 cut(s) 188, 446
AoxI GGCC 5 cut(s) 192, 247, 303, 450, 496
ApeKI GCWGC 3 cut(s) 461, 479, 961
ApoI RAATTY 2 cut(s) 725, 883
AspA2I CCTAGG 1 cut(s) 623
AspLEI GCGC 7 cut(s) 19, 167, 293, 392, 473, 559, 981
AspS9I GGNCC 5 cut(s) 193, 247, 497, 892, 928
AsuC2I CCSGG 4 cut(s) 245, 351, 500, 615
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 2 cut(s) 188, 446
AvaII GGWCC 2 cut(s) 892, 928
AvrII CCTAGG 1 cut(s) 623
BanI GGYRCC 3 cut(s) 317, 389, 470
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 3 cut(s) 448, 491, 973
BccI CCATC 1 cut(s) 1077
BceAI ACGGC 6 cut(s) 140, 152, 328, 377, 403, 448
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 3 cut(s) 278, 383, 495
BclI TGATCA 2 cut(s) 484, 844
BcnI CCSGG 4 cut(s) 245, 351, 500, 615
BcoDI GTCTC 5 cut(s) 176, 264, 340, 424, 1066
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 4 cut(s) 20, 393, 474, 982
BfuAI ACCTGC 3 cut(s) 670, 912, 939
BglI GCCNNNNNGGC 1 cut(s) 302
BlnI CCTAGG 1 cut(s) 623
Bme1390I CCNGG 7 cut(s) 245, 278, 351, 383, 495, 500, 615
Bme18I GGWCC 2 cut(s) 892, 928
BmeRI GACNNNNNGTC 2 cut(s) 340, 1038
BmeT110I CYCGRG 2 cut(s) 188, 446
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 5 cut(s) 193, 247, 497, 892, 928
BmiI GGNNCC 6 cut(s) 248, 319, 391, 472, 504, 894
BmrFI CCNGG 7 cut(s) 245, 278, 351, 383, 495, 500, 615
BmsI GCATC 9 cut(s) 152, 375, 547, 586, 598, 796, 843, 1126, 1152
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 365
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 4 cut(s) 245, 351, 500, 615
BsaBI GATNNNNATC 1 cut(s) 843
BsaHI GRCGYC 3 cut(s) 273, 390, 471
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 7 cut(s) 189, 244, 276, 447, 465, 623, 746
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 583, 613
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 356, 1109
Bse118I RCCGGY 2 cut(s) 10, 249
Bse3DI GCAATG 1 cut(s) 635
Bse8I GATNNNNATC 1 cut(s) 843
BseBI CCWGG 3 cut(s) 278, 383, 495
BseDI CCNNGG 7 cut(s) 189, 244, 276, 447, 465, 623, 746
BseGI GGATG 2 cut(s) 538, 688
BseJI GATNNNNATC 1 cut(s) 843
BseLI CCNNNNNNNGG 3 cut(s) 243, 356, 1109
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 36
BseRI GAGGAG 6 cut(s) 22, 35, 139, 217, 220, 692
BseXI GCAGC 3 cut(s) 448, 491, 973
Bsh1236I CGCG 2 cut(s) 219, 1011
BshFI GGCC 5 cut(s) 194, 249, 305, 452, 498
BshNI GGYRCC 3 cut(s) 317, 389, 470
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 2 cut(s) 188, 446
BsiSI CCGG 7 cut(s) 11, 244, 250, 351, 500, 519, 615
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 3 cut(s) 243, 356, 1109
BsmAI GTCTC 5 cut(s) 176, 264, 340, 424, 1066
BsmBI CGTCTC 2 cut(s) 264, 1066
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 5 cut(s) 194, 249, 305, 452, 498
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 2 cut(s) 188, 446
Bsp119I TTCGAA 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 5 cut(s) 484, 730, 829, 844, 1006
BspANI GGCC 5 cut(s) 194, 249, 305, 452, 498
BspCNI CTCAG 1 cut(s) 35
BspFNI CGCG 2 cut(s) 219, 1011
BspLI GGNNCC 6 cut(s) 248, 319, 391, 472, 504, 894
BspMI ACCTGC 3 cut(s) 670, 912, 939
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 3 cut(s) 317, 389, 470
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 635
BsrFI RCCGGY 2 cut(s) 10, 249
BssAI RCCGGY 2 cut(s) 10, 249
BssECI CCNNGG 7 cut(s) 189, 244, 276, 447, 465, 623, 746
BssMI GATC 5 cut(s) 484, 730, 829, 844, 1006
BssNI GRCGYC 3 cut(s) 273, 390, 471
BssT1I CCWWGG 2 cut(s) 465, 623
Bst2UI CCWGG 3 cut(s) 278, 383, 495
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 3 cut(s) 967, 1071, 1101
BstACI GRCGYC 3 cut(s) 273, 390, 471
BstAPI GCANNNNNTGC 1 cut(s) 967
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 12, 718, 1141
BstDEI CTNAG 1 cut(s) 22
BstF5I GGATG 2 cut(s) 538, 688
BstFNI CGCG 2 cut(s) 219, 1011
BstH2I RGCGCY 4 cut(s) 20, 393, 474, 982
BstHHI GCGC 7 cut(s) 19, 167, 293, 392, 473, 559, 981
BstKTI GATC 5 cut(s) 487, 733, 832, 847, 1009
BstMAI GTCTC 5 cut(s) 176, 264, 340, 424, 1066
BstMBI GATC 5 cut(s) 484, 730, 829, 844, 1006
BstNI CCWGG 3 cut(s) 278, 383, 495
BstSCI CCNGG 7 cut(s) 243, 276, 349, 381, 493, 498, 613
BstUI CGCG 2 cut(s) 219, 1011
BstV1I GCAGC 3 cut(s) 448, 491, 973
BstXI CCANNNNNNTGG 1 cut(s) 1158
BsuRI GGCC 5 cut(s) 194, 249, 305, 452, 498
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 2 cut(s) 538, 688
BtsIMutI CAGTG 1 cut(s) 1070
BveI ACCTGC 3 cut(s) 670, 912, 939
Cac8I GCNNGC 3 cut(s) 12, 718, 1141
CfoI GCGC 7 cut(s) 19, 167, 293, 392, 473, 559, 981
Cfr10I RCCGGY 2 cut(s) 10, 249
Cfr13I GGNCC 5 cut(s) 193, 247, 497, 892, 928
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 430
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 1 cut(s) 957
CviQI GTAC 1 cut(s) 430
DdeI CTNAG 1 cut(s) 22
DinI GGCGCC 2 cut(s) 391, 472
DpnI GATC 5 cut(s) 486, 732, 831, 846, 1008
DpnII GATC 5 cut(s) 484, 730, 829, 844, 1006
DraI TTTAAA 1 cut(s) 328
DriI GACNNNNNGTC 2 cut(s) 340, 1038
Eam1104I CTCTTC 3 cut(s) 967, 1071, 1101
Eam1105I GACNNNNNGTC 2 cut(s) 340, 1038
EarI CTCTTC 3 cut(s) 967, 1071, 1101
EciI GGCGGA 4 cut(s) 79, 130, 142, 375
Eco130I CCWWGG 2 cut(s) 465, 623
Eco147I AGGCCT 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 2 cut(s) 892, 928
Eco88I CYCGRG 2 cut(s) 188, 446
EcoO109I RGGNCCY 1 cut(s) 928
EcoRII CCWGG 3 cut(s) 276, 381, 493
EcoT14I CCWWGG 2 cut(s) 465, 623
EgeI GGCGCC 2 cut(s) 391, 472
EheI GGCGCC 2 cut(s) 391, 472
ErhI CCWWGG 2 cut(s) 465, 623
Esp3I CGTCTC 2 cut(s) 264, 1066
FaeI CATG 1 cut(s) 960
FaiI YATR 9 cut(s) 440, 669, 780, 843, 914, 958, 1005, 1092, 1098
FaqI GGGAC 1 cut(s) 878
FatI CATG 1 cut(s) 956
FauI CCCGC 2 cut(s) 87, 211
FbaI TGATCA 2 cut(s) 484, 844
FokI GGATG 2 cut(s) 525, 695
FspBI CTAG 1 cut(s) 624
GlaI GCGC 7 cut(s) 18, 166, 292, 391, 472, 558, 980
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 4 cut(s) 20, 393, 474, 982
HaeIII GGCC 5 cut(s) 194, 249, 305, 452, 498
HapII CCGG 7 cut(s) 11, 244, 250, 351, 500, 519, 615
HgaI GACGC 1 cut(s) 281
HhaI GCGC 7 cut(s) 19, 167, 293, 392, 473, 559, 981
Hin1I GRCGYC 3 cut(s) 273, 390, 471
Hin1II CATG 1 cut(s) 960
Hin6I GCGC 7 cut(s) 17, 165, 291, 390, 471, 557, 979
HinP1I GCGC 7 cut(s) 17, 165, 291, 390, 471, 557, 979
HinfI GANTC 1 cut(s) 184
HpaII CCGG 7 cut(s) 11, 244, 250, 351, 500, 519, 615
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 161, 543, 708
Hpy188III TCNNGA 9 cut(s) 175, 188, 256, 345, 446, 754, 791, 848, 1080
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 7 cut(s) 46, 69, 220, 397, 517, 748, 946
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 3 cut(s) 323, 336, 984
HpyCH4V TGCA 4 cut(s) 538, 568, 881, 1143
HpyF3I CTNAG 1 cut(s) 22
HpySE526I ACGT 3 cut(s) 323, 336, 984
Hsp92I GRCGYC 3 cut(s) 273, 390, 471
Hsp92II CATG 1 cut(s) 960
HspAI GCGC 7 cut(s) 17, 165, 291, 390, 471, 557, 979
KasI GGCGCC 2 cut(s) 389, 470
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Ksp22I TGATCA 2 cut(s) 484, 844
Kzo9I GATC 5 cut(s) 484, 730, 829, 844, 1006
LmnI GCTCC 4 cut(s) 81, 604, 616, 617
Lsp1109I GCAGC 3 cut(s) 448, 491, 973
LweI GCATC 9 cut(s) 152, 375, 547, 586, 598, 796, 843, 1126, 1152
MaeI CTAG 1 cut(s) 624
MaeII ACGT 3 cut(s) 323, 336, 984
MalI GATC 5 cut(s) 486, 732, 831, 846, 1008
MboI GATC 5 cut(s) 484, 730, 829, 844, 1006
MboII GAAGA 6 cut(s) 502, 556, 984, 1058, 1118, 1130
MfeI CAATTG 1 cut(s) 965
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 8 cut(s) 522, 574, 725, 883, 909, 965, 994, 1044
Mly113I GGCGCC 2 cut(s) 390, 471
MlyI GAGTC 1 cut(s) 178
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 4 cut(s) 114, 327, 687, 1165
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 2 cut(s) 308, 482
MspI CCGG 7 cut(s) 11, 244, 250, 351, 500, 519, 615
MspR9I CCNGG 7 cut(s) 245, 278, 351, 383, 495, 500, 615
MunI CAATTG 1 cut(s) 965
MvaI CCWGG 3 cut(s) 278, 383, 495
MvnI CGCG 2 cut(s) 219, 1011
NaeI GCCGGC 1 cut(s) 12
NarI GGCGCC 2 cut(s) 390, 471
NciI CCSGG 4 cut(s) 245, 351, 500, 615
NdeII GATC 5 cut(s) 484, 730, 829, 844, 1006
NgoMIV GCCGGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 960
NlaIV GGNNCC 6 cut(s) 248, 319, 391, 472, 504, 894
NspV TTCGAA 1 cut(s) 588
PaqCI CACCTGC 1 cut(s) 670
PceI AGGCCT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 834
PdiI GCCGGC 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 2 cut(s) 381, 613
PleI GAGTC 1 cut(s) 178
PluTI GGCGCC 2 cut(s) 393, 474
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 928
Psp5II RGGWCCY 1 cut(s) 928
Psp6I CCWGG 3 cut(s) 276, 381, 493
PspGI CCWGG 3 cut(s) 276, 381, 493
PspN4I GGNNCC 6 cut(s) 248, 319, 391, 472, 504, 894
PspPI GGNCC 5 cut(s) 193, 247, 497, 892, 928
PspPPI RGGWCCY 1 cut(s) 928
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 1 cut(s) 431
RsaNI GTAC 1 cut(s) 430
RseI CAYNNNNRTG 1 cut(s) 792
SaqAI TTAA 4 cut(s) 114, 327, 687, 1165
Sau3AI GATC 5 cut(s) 484, 730, 829, 844, 1006
Sau96I GGNCC 5 cut(s) 193, 247, 497, 892, 928
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 7 cut(s) 245, 278, 351, 383, 495, 500, 615
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 9 cut(s) 152, 375, 547, 586, 598, 796, 843, 1126, 1152
SfoI GGCGCC 2 cut(s) 391, 472
SfuI TTCGAA 1 cut(s) 588
SgrAI CRCCGGYG 1 cut(s) 10
SinI GGWCC 2 cut(s) 892, 928
SmiMI CAYNNNNRTG 1 cut(s) 792
Sse9I AATT 8 cut(s) 522, 574, 725, 883, 909, 965, 994, 1044
SseBI AGGCCT 1 cut(s) 452
SspDI GGCGCC 2 cut(s) 389, 470
SspI AATATT 1 cut(s) 819
SspMI CTAG 1 cut(s) 624
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 7 cut(s) 243, 276, 349, 381, 493, 498, 613
StyI CCWWGG 2 cut(s) 465, 623
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 3 cut(s) 326, 339, 987
TaqI TCGA 7 cut(s) 174, 255, 344, 588, 790, 1042, 1081
TasI AATT 8 cut(s) 522, 574, 725, 883, 909, 965, 994, 1044
TauI GCSGC 8 cut(s) 17, 296, 308, 357, 360, 476, 479, 518
Tru1I TTAA 4 cut(s) 114, 327, 687, 1165
Tru9I TTAA 4 cut(s) 114, 327, 687, 1165
TscAI CASTG 1 cut(s) 1077
TseI GCWGC 3 cut(s) 461, 479, 961
TspDTI ATGAA 1 cut(s) 686
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 1077
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 892, 928
XapI RAATTY 2 cut(s) 725, 883
XmaJI CCTAGG 1 cut(s) 623
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.