Rroxscaffold_2G00095310

Coproporphyrinogen-III oxidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
16694611 .. 16697974
3364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095310.1

Sequence Viewer

Length: 1137 bp
ATGCCGCCGCCAGCCACACTCTCATCGTCTTCCTCCTTCACCCTCCTCTCCCCATCTCCCTCCCCATCTCCAAAGCTCTCATCTTTCCACTCCAAACACCACTCCTTCCACTCCGCCACGCGCTTCACGCGCCTCCGCCTCGCCCGCTCACTCACTCCGCGATGCGCCGTCATCGAGAAAGAGACGCCGGAGACGGAAAAGCCCGATACTTTCCTCCGCGAGTCGTCGTCGCCGACCTCAGTCCGGGCGCGGTTCGAGAAGATGATAAGGGAGGCGCAGGACACAGTGTGTGAGGCCATCGCCGCCGCGGACGGCGGAGGCAAGTTTAAGGAGGACGTGTGGTCGAGGCCGGGCGGCGGTGGAGGTATCAGTAGAGTCCTCCAAAACGGCGCCGTTTGGGAGAAGGCTGGGGTTAATGTGTCTGTTGTGTATGGAGTTATGCCTCCTGAGGCTTATAGAGCTGCCAAGGGCGCCGCCACTGATCACAAGCCCGGCCCGGTGCCGTTCTTCGCCGCTGGAATTAGCTCGGTTTTGCATCCAAAGAACCCTTTTGCTCCTACTTTGCATTTCAATTATCGGTATTTCGAAACAGATGCTCCCCAAGATGCTCCTGGAGCACCTAGGCAATGGTGGTTTGGAGGTGGAACTGACTTGACACCTGCTTATATTTTTGAGGAGGATGTTAAACATTTTCATTCAGTTCAGAAAAGTGCTTGCGACAAATTTGATCCTACCTTCTATCCTCGGTTCAAGAAATGGTGTGATGATTATTTCTATATCAAGGAGATGCTTCTTTCTTTTGCCACTGGTAAATGGTTGGAAACACAGGATGCTCTTCCTGTTGAATGTGCAAACTCTGTGGTCCCTGCTTATGTACCAATTATAGAGAAAAGGAAGGATACACCATTTACAGAGGACCATAAGGCATGGCAGCAATTGCGAAGAGGGAGATATGTTGAATTCAATTTGGTATATGATCGTGGAACAACTTTTGGACTAAAGACAGGAGGTCGAATTGAGAGTATTCTTGTCTCTCTTCCACTGACTGCTCGGTGGGAATACGACCATAAACCAGAAGAGGGAAGCGAAGAATGGAAACTATTAGATGCGTGCATCAACCCAAAGGAATGGGTTTAA

Protein Analysis

378

Amino Acids

42.4

Weight (kDa)

7.66

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coprogen_oxidas PF01218 85 - 377 1.8e-116 Coproporphyrinogen III oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011336)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 667
Acc36I ACCTGC 1 cut(s) 667
AccB1I GGYRCC 3 cut(s) 389, 470, 499
AccBSI CCGCTC 1 cut(s) 147
AccII CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
AclWI GGATC 1 cut(s) 722
AcsI RAATTY 2 cut(s) 722, 959
AcyI GRCGYC 3 cut(s) 185, 390, 471
AdeI CACNNNGTG 1 cut(s) 288
AfaI GTAC 1 cut(s) 876
AfiI CCNNNNNNNGG 3 cut(s) 243, 356, 1079
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 5 cut(s) 571, 751, 845, 959, 964
AhdI GACNNNNNGTC 2 cut(s) 340, 1008
AjiI CACGTC 1 cut(s) 337
AjnI CCWGG 1 cut(s) 610
AluBI AGCT 3 cut(s) 76, 461, 525
AluI AGCT 3 cut(s) 76, 461, 525
Alw21I GWGCWC 1 cut(s) 619
Alw26I GTCTC 3 cut(s) 176, 185, 1036
AlwI GGATC 1 cut(s) 722
AoxI GGCC 3 cut(s) 294, 347, 493
ApeKI GCWGC 2 cut(s) 461, 931
ApoI RAATTY 2 cut(s) 722, 959
AspA2I CCTAGG 1 cut(s) 620
AspLEI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
AspS9I GGNCC 3 cut(s) 494, 862, 916
AsuC2I CCSGG 4 cut(s) 245, 351, 492, 497
AsuHPI GGTGA 1 cut(s) 31
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 862, 916
AvrII CCTAGG 1 cut(s) 620
AxyI CCTNAGG 1 cut(s) 447
BanI GGYRCC 3 cut(s) 389, 470, 499
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 619
BbvI GCAGC 2 cut(s) 448, 943
BccI CCATC 3 cut(s) 61, 73, 305
BceAI ACGGC 5 cut(s) 152, 328, 377, 403, 487
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 1 cut(s) 612
BciVI GTATCC 1 cut(s) 892
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 4 cut(s) 245, 351, 492, 497
BcoDI GTCTC 3 cut(s) 176, 185, 1036
BfaI CTAG 1 cut(s) 621
BfoI RGCGCY 2 cut(s) 393, 474
BfuAI ACCTGC 1 cut(s) 667
BfuI GTATCC 1 cut(s) 892
BisI GCNGC 9 cut(s) 5, 8, 303, 306, 355, 462, 474, 513, 932
BlnI CCTAGG 1 cut(s) 620
BlsI GCNGC 9 cut(s) 6, 9, 304, 307, 356, 463, 475, 514, 933
Bme1390I CCNGG 5 cut(s) 245, 351, 492, 497, 612
Bme18I GGWCC 2 cut(s) 862, 916
BmeRI GACNNNNNGTC 2 cut(s) 340, 1008
BmgBI CACGTC 1 cut(s) 337
BmgT120I GGNCC 3 cut(s) 494, 862, 916
BmiI GGNNCC 4 cut(s) 391, 472, 501, 864
BmrFI CCNGG 5 cut(s) 245, 351, 492, 497, 612
BmsI GCATC 8 cut(s) 152, 544, 583, 595, 777, 820, 1096, 1122
BoxI GACNNNNGTC 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 1 cut(s) 633
Bpu14I TTCGAA 1 cut(s) 585
BpuMI CCSGG 4 cut(s) 245, 351, 492, 497
BsaHI GRCGYC 3 cut(s) 185, 390, 471
BsaJI CCNNGG 4 cut(s) 306, 465, 620, 743
BsaXI ACNNNNNCTCC 4 cut(s) 323, 353, 580, 610
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 356, 1079
Bse1I ACTGG 1 cut(s) 811
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 632
BseBI CCWGG 1 cut(s) 612
BseDI CCNNGG 4 cut(s) 306, 465, 620, 743
BseGI GGATG 3 cut(s) 535, 685, 835
BseLI CCNNNNNNNGG 3 cut(s) 243, 356, 1079
BseMI GCAATG 1 cut(s) 632
BseMII CTCAG 2 cut(s) 252, 438
BseNI ACTGG 1 cut(s) 811
BseRI GAGGAG 2 cut(s) 35, 689
BseXI GCAGC 2 cut(s) 448, 943
BseYI CCCAGC 1 cut(s) 407
Bsh1236I CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BshFI GGCC 3 cut(s) 296, 349, 495
BshNI GGYRCC 3 cut(s) 389, 470, 499
BsiHKAI GWGCWC 1 cut(s) 619
BsiSI CCGG 5 cut(s) 188, 244, 350, 492, 497
BslFI GGGAC 1 cut(s) 848
BslI CCNNNNNNNGG 3 cut(s) 243, 356, 1079
BsmAI GTCTC 3 cut(s) 176, 185, 1036
BsmBI CGTCTC 2 cut(s) 176, 185
BsmFI GGGAC 1 cut(s) 848
BsnI GGCC 3 cut(s) 296, 349, 495
Bsp119I TTCGAA 1 cut(s) 585
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 3 cut(s) 481, 727, 976
BspANI GGCC 3 cut(s) 296, 349, 495
BspCNI CTCAG 2 cut(s) 251, 439
BspFNI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BspLI GGNNCC 4 cut(s) 391, 472, 501, 864
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 1 cut(s) 722
BspQI GCTCTTC 1 cut(s) 840
BspT104I TTCGAA 1 cut(s) 585
BspT107I GGYRCC 3 cut(s) 389, 470, 499
BsrBI CCGCTC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 632
BsrI ACTGG 1 cut(s) 811
BssECI CCNNGG 4 cut(s) 306, 465, 620, 743
BssMI GATC 3 cut(s) 481, 727, 976
BssNI GRCGYC 3 cut(s) 185, 390, 471
BssT1I CCWWGG 2 cut(s) 465, 620
Bst2UI CCWGG 1 cut(s) 612
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 4 cut(s) 840, 937, 1041, 1071
BstACI GRCGYC 3 cut(s) 185, 390, 471
BstAPI GCANNNNNTGC 1 cut(s) 937
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 4 cut(s) 12, 145, 715, 1111
BstDEI CTNAG 2 cut(s) 238, 447
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 535, 685, 835
BstFNI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BstH2I RGCGCY 2 cut(s) 393, 474
BstHHI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
BstKTI GATC 3 cut(s) 484, 730, 979
BstMAI GTCTC 3 cut(s) 176, 185, 1036
BstMBI GATC 3 cut(s) 481, 727, 976
BstMWI GCNNNNNNNGC 8 cut(s) 127, 129, 144, 302, 458, 470, 614, 937
BstNI CCWGG 1 cut(s) 612
BstPAI GACNNNNGTC 1 cut(s) 239
BstSCI CCNGG 5 cut(s) 243, 349, 490, 495, 610
BstUI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
BstV1I GCAGC 2 cut(s) 448, 943
BstV2I GAAGAC 1 cut(s) 21
BstXI CCANNNNNNTGG 1 cut(s) 1128
Bsu36I CCTNAGG 1 cut(s) 447
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 3 cut(s) 296, 349, 495
BtgI CCRYGG 1 cut(s) 306
BtgZI GCGATG 2 cut(s) 175, 283
BtrI CACGTC 1 cut(s) 337
BtsCI GGATG 3 cut(s) 535, 685, 835
BtsIMutI CAGTG 4 cut(s) 291, 477, 804, 1040
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 4 cut(s) 12, 145, 715, 1111
CfoI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
Cfr13I GGNCC 3 cut(s) 494, 862, 916
Cfr42I CCGCGG 1 cut(s) 309
CseI GACGC 1 cut(s) 193
Csp6I GTAC 1 cut(s) 875
CspCI CAANNNNNGTGG 2 cut(s) 840, 875
CviAII CATG 1 cut(s) 927
CviQI GTAC 1 cut(s) 875
DdeI CTNAG 2 cut(s) 238, 447
DinI GGCGCC 2 cut(s) 391, 472
DpnI GATC 3 cut(s) 483, 729, 978
DpnII GATC 3 cut(s) 481, 727, 976
DraIII CACNNNGTG 1 cut(s) 288
DriI GACNNNNNGTC 2 cut(s) 340, 1008
Eam1104I CTCTTC 4 cut(s) 840, 937, 1041, 1071
Eam1105I GACNNNNNGTC 2 cut(s) 340, 1008
EarI CTCTTC 4 cut(s) 840, 937, 1041, 1071
EciI GGCGGA 3 cut(s) 103, 125, 330
Eco130I CCWWGG 2 cut(s) 465, 620
Eco47I GGWCC 2 cut(s) 862, 916
Eco81I CCTNAGG 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 465, 620
EgeI GGCGCC 2 cut(s) 391, 472
EheI GGCGCC 2 cut(s) 391, 472
ErhI CCWWGG 2 cut(s) 465, 620
Esp3I CGTCTC 2 cut(s) 176, 185
FaeI CATG 1 cut(s) 930
FaqI GGGAC 1 cut(s) 848
FatI CATG 1 cut(s) 926
FauI CCCGC 1 cut(s) 152
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 9 cut(s) 5, 8, 303, 306, 355, 462, 474, 513, 932
FokI GGATG 3 cut(s) 522, 692, 842
Fsp4HI GCNGC 9 cut(s) 5, 8, 303, 306, 355, 462, 474, 513, 932
FspBI CTAG 1 cut(s) 621
GlaI GCGC 7 cut(s) 122, 131, 166, 249, 276, 391, 472
GluI GCNGC 9 cut(s) 5, 8, 303, 306, 355, 462, 474, 513, 932
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 633
HaeII RGCGCY 2 cut(s) 393, 474
HaeIII GGCC 3 cut(s) 296, 349, 495
HapII CCGG 5 cut(s) 188, 244, 350, 492, 497
HgaI GACGC 1 cut(s) 193
HhaI GCGC 7 cut(s) 123, 132, 167, 250, 277, 392, 473
Hin1I GRCGYC 3 cut(s) 185, 390, 471
Hin1II CATG 1 cut(s) 930
Hin6I GCGC 7 cut(s) 121, 130, 165, 248, 275, 390, 471
HinP1I GCGC 7 cut(s) 121, 130, 165, 248, 275, 390, 471
HinfI GANTC 2 cut(s) 221, 375
HpaII CCGG 5 cut(s) 188, 244, 350, 492, 497
HphI GGTGA 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 705
Hpy188III TCNNGA 4 cut(s) 175, 256, 446, 751
Hpy99I CGWCG 2 cut(s) 229, 232
HpyAV CCTTC 5 cut(s) 46, 115, 397, 745, 889
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 336
HpyCH4V TGCA 4 cut(s) 535, 565, 851, 1113
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 129, 144, 302, 458, 470, 614, 937
HpyF3I CTNAG 2 cut(s) 238, 447
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 3 cut(s) 185, 390, 471
Hsp92II CATG 1 cut(s) 930
HspAI GCGC 7 cut(s) 121, 130, 165, 248, 275, 390, 471
KasI GGCGCC 2 cut(s) 389, 470
Ksp22I TGATCA 1 cut(s) 481
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 3 cut(s) 481, 727, 976
LguI GCTCTTC 1 cut(s) 840
LmnI GCTCC 4 cut(s) 559, 601, 613, 614
Lsp1109I GCAGC 2 cut(s) 448, 943
LweI GCATC 8 cut(s) 152, 544, 583, 595, 777, 820, 1096, 1122
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 336
MalI GATC 3 cut(s) 483, 729, 978
MbiI CCGCTC 1 cut(s) 147
MboI GATC 3 cut(s) 481, 727, 976
MboII GAAGA 8 cut(s) 21, 271, 499, 827, 954, 1028, 1088, 1100
MfeI CAATTG 1 cut(s) 935
MhlI GDGCHC 1 cut(s) 619
MluCI AATT 8 cut(s) 519, 571, 722, 879, 935, 959, 964, 1014
Mly113I GGCGCC 2 cut(s) 390, 471
MlyI GAGTC 2 cut(s) 230, 384
MmeI TCCRAC 1 cut(s) 798
MseI TTAA 4 cut(s) 327, 414, 684, 1135
MspA1I CMGCKG 2 cut(s) 308, 515
MspI CCGG 5 cut(s) 188, 244, 350, 492, 497
MspR9I CCNGG 5 cut(s) 245, 351, 492, 497, 612
MunI CAATTG 1 cut(s) 935
MvaI CCWGG 1 cut(s) 612
MvnI CGCG 6 cut(s) 121, 130, 160, 219, 250, 308
MwoI GCNNNNNNNGC 8 cut(s) 127, 129, 144, 302, 458, 470, 614, 937
NarI GGCGCC 2 cut(s) 390, 471
NciI CCSGG 4 cut(s) 245, 351, 492, 497
NdeII GATC 3 cut(s) 481, 727, 976
NlaIII CATG 1 cut(s) 930
NlaIV GGNNCC 4 cut(s) 391, 472, 501, 864
NspV TTCGAA 1 cut(s) 585
PaqCI CACCTGC 1 cut(s) 667
PciSI GCTCTTC 1 cut(s) 840
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 610
PkrI GCNGC 9 cut(s) 6, 9, 304, 307, 356, 463, 475, 514, 933
PleI GAGTC 2 cut(s) 229, 383
PluTI GGCGCC 2 cut(s) 393, 474
PpsI GAGTC 2 cut(s) 229, 383
PshAI GACNNNNGTC 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 610
PspN4I GGNNCC 4 cut(s) 391, 472, 501, 864
PspPI GGNCC 3 cut(s) 494, 862, 916
RsaI GTAC 1 cut(s) 876
RsaNI GTAC 1 cut(s) 875
SacII CCGCGG 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 840
SaqAI TTAA 4 cut(s) 327, 414, 684, 1135
SatI GCNGC 9 cut(s) 5, 8, 303, 306, 355, 462, 474, 513, 932
Sau3AI GATC 3 cut(s) 481, 727, 976
Sau96I GGNCC 3 cut(s) 494, 862, 916
SchI GAGTC 2 cut(s) 230, 384
ScrFI CCNGG 5 cut(s) 245, 351, 492, 497, 612
SduI GDGCHC 1 cut(s) 619
SfaNI GCATC 8 cut(s) 152, 544, 583, 595, 777, 820, 1096, 1122
SfoI GGCGCC 2 cut(s) 391, 472
Sfr303I CCGCGG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 585
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 2 cut(s) 862, 916
Sse9I AATT 8 cut(s) 519, 571, 722, 879, 935, 959, 964, 1014
SspDI GGCGCC 2 cut(s) 389, 470
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 5 cut(s) 243, 349, 490, 495, 610
StyI CCWWGG 2 cut(s) 465, 620
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 339
TaqI TCGA 5 cut(s) 174, 255, 344, 585, 1012
TasI AATT 8 cut(s) 519, 571, 722, 879, 935, 959, 964, 1014
TauI GCSGC 7 cut(s) 7, 10, 305, 308, 357, 476, 515
Tru1I TTAA 4 cut(s) 327, 414, 684, 1135
Tru9I TTAA 4 cut(s) 327, 414, 684, 1135
TscAI CASTG 4 cut(s) 291, 484, 811, 1047
TseI GCWGC 2 cut(s) 461, 931
TspDTI ATGAA 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 4 cut(s) 291, 484, 811, 1047
VpaK11BI GGWCC 2 cut(s) 862, 916
XapI RAATTY 2 cut(s) 722, 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 608
XmaJI CCTAGG 1 cut(s) 620
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.