Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011336

Physical Location & Seq

Genomic Coordinates Forward (+)

72079171 .. 72082831

Gene Structure 3661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG498700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCCGCCACCAGCCACACTCTCAGCTTCTTCCTCCTTCACCCTCCTCTCCCCATCTCCCTCCCCATCTCCAAAGCTCGCTTCTTTCCACTCCAAACACCGCTCCTTCCACTCCGCCACGCGCTTCACGCGCCTCCGCCGCGCCCGCTCACTCACTCCGCGATGCGCAATCATCGAGAAAGAGACGCCGGAGACGGAAAAGCCCGATACTTTCCTCCGCGAGTCGTCGTCGCCGACCTCAGTCCGGGCGCGGTTCGAGAAGATGATACGGGAGGCGCAGGACACAGTGTGTGAGGCCATCGCCGCCGCGGACGGCGGAGGCAAGTTTAAGGAGGACGTGTGGTCGAGGCCTGGCGGCGGCGGAGGTATTAGTAGAGTCCTTCAAAACGGCGCCGTTTGGGAGAAGGCTGGGGTTAATGTGTCTGTTGTGTATGGAGTTATGCCTCCTGAGGCTTATAGAGCTGCCAAGGGCGCCGCCGCTGATCACAAGCCCGGCCCGGTTCCGTTCTTCGCCGCCGGAATTAGCTCGGTTTTGCATCCAAAGAACCCTTTTGCTCCTACTTTGCATTTCAATTATCGGTATTTTGAAACAGATGCTCCCCAAGATGCTCCTGGAGCACCTAGGCAATGGTGGTTTGGAGGTGGAACTGACTTGACGCCTGCTTATATTTTTGAGGAGGATGTTAAACATTTTCATTCAGTTCAGAAAAGTTCTTGCGACAAATTTGATCCTACCTTCTATCCTCGGTTCAAGAAATGGTGTGATGATTATTTCTATATCAAGCATCGTGATGAGAGACGAGGTCTTGGGGGAATATTTTTTGATGATCTAAATGACTATGATCAGGAGATGCTTCTTTCTTTTGCCACTGGTAAATGGTTGGAAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Coprogen_oxidas

Protein Analysis

296

Amino Acids

33.02

Weight (kDa)

8.57

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coprogen_oxidas	PF01218	85 - 289	2.3e-85	Coproporphyrinogen III oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03475 AT4G03205 AT4G03205
fragaria_vesca	FvH4_6g39170
malus_domestica	MD09G1144600.v1.1 MD17G1131200.v1.1
prunus_persica	Prupe.3G183400_v2.0.a1
pyrus_communis	pycom09g06400 pycom17g12400
rosa_chinensis	RchiOBHm_Chr2g0153001
rosa_laevigata	RLG00000020666
rosa_multiflora	Rmu_sc0000218.1_g000004 Rmu_sc0000218.1_g000005
rosa_roxburghii	Rroxscaffold_2G00095310
rosa_rugosa	Rorug02G0436700
rosa_samantha	Rh2AG498700 Rh2BG510000 Rh2CG485000 Rh2DG521600
rosa_wichuraiana	Rw2G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
AccB1I	GGYRCC	2 cut(s)	389, 470
AccBSI	CCGCTC	2 cut(s)	102, 147
AccII	CGCG	7 cut(s)	121, 130, 141, 160, 219, 250, 308
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	1 cut(s)	722
AcyI	GRCGYC	4 cut(s)	185, 390, 471, 656
AdeI	CACNNNGTG	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	243, 356
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	4 cut(s)	383, 571, 587, 751
AhdI	GACNNNNNGTC	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	349, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	4 cut(s)	26, 76, 461, 525
AluI	AGCT	4 cut(s)	26, 76, 461, 525
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	3 cut(s)	176, 185, 790
AlwI	GGATC	1 cut(s)	722
AoxI	GGCC	3 cut(s)	294, 347, 493
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	722
AspA2I	CCTAGG	1 cut(s)	620
AspLEI	GCGC	8 cut(s)	123, 132, 143, 167, 250, 277, 392, 473
AspS9I	GGNCC	1 cut(s)	494
AsuC2I	CCSGG	3 cut(s)	245, 492, 497
AsuHPI	GGTGA	1 cut(s)	31
AvrII	CCTAGG	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	447
BanI	GGYRCC	2 cut(s)	389, 470
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	3 cut(s)	61, 73, 305
BceAI	ACGGC	3 cut(s)	328, 377, 403
BciT130I	CCWGG	2 cut(s)	351, 612
BclI	TGATCA	2 cut(s)	481, 841
BcnI	CCSGG	3 cut(s)	245, 492, 497
BcoDI	GTCTC	3 cut(s)	176, 185, 790
BfaI	CTAG	1 cut(s)	621
BfoI	RGCGCY	2 cut(s)	393, 474
BlnI	CCTAGG	1 cut(s)	620
Bme1390I	CCNGG	5 cut(s)	245, 351, 492, 497, 612
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	3 cut(s)	391, 472, 501
BmrFI	CCNGG	5 cut(s)	245, 351, 492, 497, 612
BmsI	GCATC	6 cut(s)	152, 544, 583, 595, 793, 840
BoxI	GACNNNNGTC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	633
BpuMI	CCSGG	3 cut(s)	245, 492, 497
BsaHI	GRCGYC	4 cut(s)	185, 390, 471, 656
BsaJI	CCNNGG	4 cut(s)	306, 465, 620, 743
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 580, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 356
Bse1I	ACTGG	1 cut(s)	874
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	351, 612
BseDI	CCNNGG	4 cut(s)	306, 465, 620, 743
BseGI	GGATG	2 cut(s)	535, 685
BseLI	CCNNNNNNNGG	2 cut(s)	243, 356
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	3 cut(s)	36, 252, 438
BseNI	ACTGG	1 cut(s)	874
BseRI	GAGGAG	2 cut(s)	35, 689
BseXI	GCAGC	1 cut(s)	448
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	7 cut(s)	121, 130, 141, 160, 219, 250, 308
BshFI	GGCC	3 cut(s)	296, 349, 495
BshNI	GGYRCC	2 cut(s)	389, 470
BsiHKAI	GWGCWC	1 cut(s)	619
BsiSI	CCGG	5 cut(s)	188, 244, 492, 497, 516
BslI	CCNNNNNNNGG	2 cut(s)	243, 356
BsmAI	GTCTC	3 cut(s)	176, 185, 790
BsmBI	CGTCTC	3 cut(s)	176, 185, 790
BsnI	GGCC	3 cut(s)	296, 349, 495
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	4 cut(s)	481, 727, 826, 841
BspANI	GGCC	3 cut(s)	296, 349, 495
BspCNI	CTCAG	3 cut(s)	35, 251, 439
BspFNI	CGCG	7 cut(s)	121, 130, 141, 160, 219, 250, 308
BspLI	GGNNCC	3 cut(s)	391, 472, 501
BspPI	GGATC	1 cut(s)	722
BspT107I	GGYRCC	2 cut(s)	389, 470
BsrBI	CCGCTC	2 cut(s)	102, 147
BsrDI	GCAATG	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	874
BssECI	CCNNGG	4 cut(s)	306, 465, 620, 743
BssMI	GATC	4 cut(s)	481, 727, 826, 841
BssNI	GRCGYC	4 cut(s)	185, 390, 471, 656
BssT1I	CCWWGG	2 cut(s)	465, 620
Bst2UI	CCWGG	2 cut(s)	351, 612
Bst4CI	ACNGT	1 cut(s)	286
BstACI	GRCGYC	4 cut(s)	185, 390, 471, 656
BstC8I	GCNNGC	3 cut(s)	78, 145, 660
BstDEI	CTNAG	3 cut(s)	22, 238, 447
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	535, 685
BstFNI	CGCG	7 cut(s)	121, 130, 141, 160, 219, 250, 308
BstH2I	RGCGCY	2 cut(s)	393, 474
BstHHI	GCGC	8 cut(s)	123, 132, 143, 167, 250, 277, 392, 473
BstKTI	GATC	4 cut(s)	484, 730, 829, 844
BstMAI	GTCTC	3 cut(s)	176, 185, 790
BstMBI	GATC	4 cut(s)	481, 727, 826, 841
BstMWI	GCNNNNNNNGC	8 cut(s)	127, 129, 138, 144, 302, 458, 470, 614
BstNI	CCWGG	2 cut(s)	351, 612
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	5 cut(s)	243, 349, 490, 495, 610
BstUI	CGCG	7 cut(s)	121, 130, 141, 160, 219, 250, 308
BstV1I	GCAGC	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	3 cut(s)	296, 349, 495
BtgI	CCRYGG	1 cut(s)	306
BtgZI	GCGATG	2 cut(s)	175, 283
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	2 cut(s)	535, 685
BtsIMutI	CAGTG	2 cut(s)	291, 867
Cac8I	GCNNGC	3 cut(s)	78, 145, 660
CfoI	GCGC	8 cut(s)	123, 132, 143, 167, 250, 277, 392, 473
Cfr13I	GGNCC	1 cut(s)	494
Cfr42I	CCGCGG	1 cut(s)	309
CseI	GACGC	2 cut(s)	193, 664
DdeI	CTNAG	3 cut(s)	22, 238, 447
DinI	GGCGCC	2 cut(s)	391, 472
DpnI	GATC	4 cut(s)	483, 729, 828, 843
DpnII	GATC	4 cut(s)	481, 727, 826, 841
DraIII	CACNNNGTG	1 cut(s)	288
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EciI	GGCGGA	4 cut(s)	103, 125, 330, 375
Eco130I	CCWWGG	2 cut(s)	465, 620
Eco147I	AGGCCT	1 cut(s)	349
Eco81I	CCTNAGG	1 cut(s)	447
EcoRII	CCWGG	2 cut(s)	349, 610
EcoT14I	CCWWGG	2 cut(s)	465, 620
EgeI	GGCGCC	2 cut(s)	391, 472
EheI	GGCGCC	2 cut(s)	391, 472
ErhI	CCWWGG	2 cut(s)	465, 620
Esp3I	CGTCTC	3 cut(s)	176, 185, 790
FaiI	YATR	7 cut(s)	432, 440, 456, 666, 777, 840, 889
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	2 cut(s)	481, 841
FokI	GGATG	2 cut(s)	522, 692
FspBI	CTAG	1 cut(s)	621
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	8 cut(s)	122, 131, 142, 166, 249, 276, 391, 472
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	633
HaeII	RGCGCY	2 cut(s)	393, 474
HaeIII	GGCC	3 cut(s)	296, 349, 495
HapII	CCGG	5 cut(s)	188, 244, 492, 497, 516
HgaI	GACGC	2 cut(s)	193, 664
HhaI	GCGC	8 cut(s)	123, 132, 143, 167, 250, 277, 392, 473
Hin1I	GRCGYC	4 cut(s)	185, 390, 471, 656
Hin6I	GCGC	8 cut(s)	121, 130, 141, 165, 248, 275, 390, 471
HinP1I	GCGC	8 cut(s)	121, 130, 141, 165, 248, 275, 390, 471
HinfI	GANTC	2 cut(s)	221, 375
HpaII	CCGG	5 cut(s)	188, 244, 492, 497, 516
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	6 cut(s)	175, 256, 446, 751, 788, 845
Hpy99I	CGWCG	2 cut(s)	229, 232
HpyAV	CCTTC	5 cut(s)	46, 115, 389, 397, 745
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	2 cut(s)	535, 565
HpyF10VI	GCNNNNNNNGC	8 cut(s)	127, 129, 138, 144, 302, 458, 470, 614
HpyF3I	CTNAG	3 cut(s)	22, 238, 447
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	4 cut(s)	185, 390, 471, 656
HspAI	GCGC	8 cut(s)	121, 130, 141, 165, 248, 275, 390, 471
KasI	GGCGCC	2 cut(s)	389, 470
Ksp22I	TGATCA	2 cut(s)	481, 841
KspI	CCGCGG	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	481, 727, 826, 841
LmnI	GCTCC	5 cut(s)	107, 559, 601, 613, 614
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	6 cut(s)	152, 544, 583, 595, 793, 840
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	336
MalI	GATC	4 cut(s)	483, 729, 828, 843
MbiI	CCGCTC	2 cut(s)	102, 147
MboI	GATC	4 cut(s)	481, 727, 826, 841
MboII	GAAGA	3 cut(s)	21, 271, 499
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	3 cut(s)	519, 571, 722
Mly113I	GGCGCC	2 cut(s)	390, 471
MlyI	GAGTC	2 cut(s)	230, 384
MmeI	TCCRAC	1 cut(s)	861
MseI	TTAA	3 cut(s)	327, 414, 684
MslI	CAYNNNNRTG	1 cut(s)	789
MspA1I	CMGCKG	2 cut(s)	308, 479
MspI	CCGG	5 cut(s)	188, 244, 492, 497, 516
MspR9I	CCNGG	5 cut(s)	245, 351, 492, 497, 612
MvaI	CCWGG	2 cut(s)	351, 612
MvnI	CGCG	7 cut(s)	121, 130, 141, 160, 219, 250, 308
MwoI	GCNNNNNNNGC	8 cut(s)	127, 129, 138, 144, 302, 458, 470, 614
NarI	GGCGCC	2 cut(s)	390, 471
NciI	CCSGG	3 cut(s)	245, 492, 497
NdeII	GATC	4 cut(s)	481, 727, 826, 841
NlaIV	GGNNCC	3 cut(s)	391, 472, 501
NsbI	TGCGCA	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PflFI	GACNNNGTC	1 cut(s)	801
PfoI	TCCNGGA	1 cut(s)	610
PleI	GAGTC	2 cut(s)	229, 383
PluTI	GGCGCC	2 cut(s)	393, 474
PpsI	GAGTC	2 cut(s)	229, 383
PshAI	GACNNNNGTC	1 cut(s)	239
Psp6I	CCWGG	2 cut(s)	349, 610
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	2 cut(s)	349, 610
PspN4I	GGNNCC	3 cut(s)	391, 472, 501
PspPI	GGNCC	1 cut(s)	494
PsyI	GACNNNGTC	1 cut(s)	801
RseI	CAYNNNNRTG	1 cut(s)	789
SacII	CCGCGG	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	327, 414, 684
Sau3AI	GATC	4 cut(s)	481, 727, 826, 841
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	2 cut(s)	230, 384
ScrFI	CCNGG	5 cut(s)	245, 351, 492, 497, 612
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	6 cut(s)	152, 544, 583, 595, 793, 840
SfoI	GGCGCC	2 cut(s)	391, 472
Sfr303I	CCGCGG	1 cut(s)	309
SgrBI	CCGCGG	1 cut(s)	309
SmiMI	CAYNNNNRTG	1 cut(s)	789
Sse9I	AATT	3 cut(s)	519, 571, 722
SseBI	AGGCCT	1 cut(s)	349
SspDI	GGCGCC	2 cut(s)	389, 470
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	1 cut(s)	621
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	5 cut(s)	243, 349, 490, 495, 610
StyI	CCWWGG	2 cut(s)	465, 620
TaaI	ACNGT	1 cut(s)	286
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	174, 255, 344
TasI	AATT	3 cut(s)	519, 571, 722
TauI	GCSGC	9 cut(s)	7, 141, 305, 308, 357, 360, 476, 479, 515
Tru1I	TTAA	3 cut(s)	327, 414, 684
Tru9I	TTAA	3 cut(s)	327, 414, 684
TscAI	CASTG	2 cut(s)	291, 874
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	2 cut(s)	209, 492
TspRI	CASTG	2 cut(s)	291, 874
Tth111I	GACNNNGTC	1 cut(s)	801
XapI	RAATTY	1 cut(s)	722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XmaJI	CCTAGG	1 cut(s)	620
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.