pycom09g06400

Coproporphyrinogen-III oxidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0011336
Physical Location & Seq
Reverse (-)
4701794 .. 4704671
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06400.8

Sequence Viewer

Length: 1167 bp
ATGCCACCGCCGGCGGCGCTCTCAGCTTCCTCCTCCTTCACTCTCCTCTCCCCACCTCCCTCCCCAAAACCAAAGCTCCCCCCTTTCTCCCCCAGAAAACGCTCCTTCGCCATCACCCCACGTCGCCACCCCCTCCACTCCGCTCCCTCCTCCGCCGTCCGATGCGCCGTCATCGAAAAAGAAACCCCCGAGGCCCACCGCCCCGATACCTTCCTCCGCGAGAACTCCTCCTCGTCCTCCGTCCGCGCCCGCTTTGAGAAAATGATAAGAGATGCCCAGGACACTGTCTGCGCCGCCATTGAGGCCGCGGACGGTGGCGCCACATTTAAAGAGGACGTGTGGTCGAGACCCGGTGGTGGCGGAGGCATCAGCAGGGTCCTCCAGGACGGCGCCGTTTGGGAGAAAGCTGGTGTCAATGTCTCTGTTGTGTACGGTGTTATGCCTCCTGAGGCTTACCGAGCTGCCAAGGGCGCCGCCGCAGCTGATCATAAGCCTGGCCCGGTTCCCTTCTTCGCTGCCGGAGTTAGCTCGGTTTTGCATCCGAAGAACCCATTTGCGCCTACTTTGCATTTCAATTATCGGTATTTCGAAACCGATGCTCCCCAAGATGCTCCTGGAGCACCAAGGCAGTGGTGGTTTGGGGGTGGTACTGACTTGACACCTGCTTATATTTTTGAGGAGGATGTTAAGCACTTTCATTCAGTTCAGAAAAGTGCTTGCGACAAATTTGATCCTGCCTTCTATCCTCGGTTCAAGAAATGGTGTGATGATTATTTCTATATCAAGCATCGAGATGAGAGGCGAGGACTTGGAGGAATATTTTTTGATGATCTAAATGACTACAATCAGGAGATGCTTCTTTCTTTTGCAACTGAATGTGCAAATTCTGTGGTCCCTGCTTACCTGCCGATTATAGAGAAAAGAAAGGACCTACCATTTACACATCAGCAGAAGGAATGGCAGCAATTGCGAAGAGGGCGCTATGTCGAGTTCAATTTGGTTTATGATCGTGGAACTACTTTTGGACTAAAGACGGGAGGTCGAATTGAGAGTATTCTCGTCTCTCTTCCGCTGACTGCTCGATGGGAATATGACCATAAACCAGAAGAGGGAAGCGAAGAATGGAAACTGCTAGATGCTTGCATCAACCCAAAGGAATGGATTTAA

Protein Analysis

389

Amino Acids

43.51

Weight (kDa)

7.66

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011336)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03475 AT4G03205 AT4G03205
fragaria_vesca FvH4_6g39170
malus_domestica MD09G1144600.v1.1 MD17G1131200.v1.1
prunus_persica Prupe.3G183400_v2.0.a1
pyrus_communis pycom09g06400 pycom17g12400
rosa_chinensis RchiOBHm_Chr2g0153001
rosa_laevigata RLG00000020666
rosa_multiflora Rmu_sc0000218.1_g000004 Rmu_sc0000218.1_g000005
rosa_roxburghii Rroxscaffold_2G00095310
rosa_rugosa Rorug02G0436700
rosa_samantha Rh2AG498700 Rh2BG510000 Rh2CG485000 Rh2DG521600
rosa_wichuraiana Rw2G040930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 670
Acc36I ACCTGC 2 cut(s) 670, 912
AccB1I GGYRCC 3 cut(s) 317, 389, 470
AccBSI CCGCTC 1 cut(s) 143
AccII CGCG 3 cut(s) 219, 246, 308
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 2 cut(s) 725, 883
AcyI GRCGYC 3 cut(s) 318, 390, 471
AfaI GTAC 2 cut(s) 431, 649
AfiI CCNNNNNNNGG 2 cut(s) 356, 1109
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 574, 754, 994
AhdI GACNNNNNGTC 2 cut(s) 340, 1038
AjiI CACGTC 2 cut(s) 122, 337
AjnI CCWGG 4 cut(s) 276, 381, 493, 613
AluBI AGCT 6 cut(s) 26, 76, 407, 461, 482, 528
AluI AGCT 6 cut(s) 26, 76, 407, 461, 482, 528
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 3 cut(s) 340, 424, 1066
AlwI GGATC 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 3 cut(s) 192, 303, 496
ApeKI GCWGC 4 cut(s) 461, 479, 515, 961
ApoI RAATTY 2 cut(s) 725, 883
AspLEI GCGC 9 cut(s) 19, 167, 248, 293, 320, 392, 473, 559, 981
AspS9I GGNCC 5 cut(s) 193, 376, 497, 892, 928
AsuC2I CCSGG 2 cut(s) 351, 500
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 376, 892, 928
AxyI CCTNAGG 1 cut(s) 447
BanI GGYRCC 3 cut(s) 317, 389, 470
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 4 cut(s) 448, 491, 502, 973
BccI CCATC 2 cut(s) 119, 1077
BceAI ACGGC 4 cut(s) 140, 152, 377, 403
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 4 cut(s) 278, 383, 495, 615
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 2 cut(s) 351, 500
BcoDI GTCTC 3 cut(s) 340, 424, 1066
BfaI CTAG 1 cut(s) 1133
BfoI RGCGCY 5 cut(s) 20, 321, 393, 474, 982
BfuAI ACCTGC 2 cut(s) 670, 912
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
BlsI GCNGC 9 cut(s) 16, 295, 307, 463, 475, 478, 481, 517, 963
Bme1390I CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
Bme18I GGWCC 3 cut(s) 376, 892, 928
BmeRI GACNNNNNGTC 2 cut(s) 340, 1038
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 2 cut(s) 122, 337
BmgT120I GGNCC 5 cut(s) 193, 376, 497, 892, 928
BmiI GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
BmrFI CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 2 cut(s) 365, 636
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 2 cut(s) 351, 500
BsaHI GRCGYC 3 cut(s) 318, 390, 471
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 6 cut(s) 189, 276, 306, 465, 623, 746
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 1109
Bse118I RCCGGY 1 cut(s) 10
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 4 cut(s) 278, 383, 495, 615
BseDI CCNNGG 6 cut(s) 189, 276, 306, 465, 623, 746
BseGI GGATG 2 cut(s) 538, 688
BseLI CCNNNNNNNGG 2 cut(s) 356, 1109
BseMII CTCAG 2 cut(s) 36, 438
BseRI GAGGAG 6 cut(s) 22, 35, 139, 217, 220, 692
BseXI GCAGC 4 cut(s) 448, 491, 502, 973
Bsh1236I CGCG 3 cut(s) 219, 246, 308
BshFI GGCC 3 cut(s) 194, 305, 498
BshNI GGYRCC 3 cut(s) 317, 389, 470
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 11, 351, 500, 519
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 2 cut(s) 356, 1109
BsmAI GTCTC 3 cut(s) 340, 424, 1066
BsmBI CGTCTC 1 cut(s) 1066
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 3 cut(s) 194, 305, 498
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 4 cut(s) 484, 730, 829, 1006
BspANI GGCC 3 cut(s) 194, 305, 498
BspCNI CTCAG 2 cut(s) 35, 439
BspFNI CGCG 3 cut(s) 219, 246, 308
BspLI GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
BspMI ACCTGC 2 cut(s) 670, 912
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 3 cut(s) 317, 389, 470
BspTNI GGTCTC 1 cut(s) 340
BsrBI CCGCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 6 cut(s) 189, 276, 306, 465, 623, 746
BssMI GATC 4 cut(s) 484, 730, 829, 1006
BssNI GRCGYC 3 cut(s) 318, 390, 471
BssT1I CCWWGG 2 cut(s) 465, 623
Bst2UI CCWGG 4 cut(s) 278, 383, 495, 615
Bst4CI ACNGT 3 cut(s) 286, 314, 434
Bst6I CTCTTC 3 cut(s) 967, 1071, 1101
BstACI GRCGYC 3 cut(s) 318, 390, 471
BstAPI GCANNNNNTGC 1 cut(s) 967
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 4 cut(s) 12, 250, 718, 1141
BstDEI CTNAG 2 cut(s) 22, 447
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 538, 688
BstFNI CGCG 3 cut(s) 219, 246, 308
BstH2I RGCGCY 5 cut(s) 20, 321, 393, 474, 982
BstHHI GCGC 9 cut(s) 19, 167, 248, 293, 320, 392, 473, 559, 981
BstKTI GATC 4 cut(s) 487, 733, 832, 1009
BstMAI GTCTC 3 cut(s) 340, 424, 1066
BstMBI GATC 4 cut(s) 484, 730, 829, 1006
BstNI CCWGG 4 cut(s) 278, 383, 495, 615
BstSCI CCNGG 6 cut(s) 276, 349, 381, 493, 498, 613
BstUI CGCG 3 cut(s) 219, 246, 308
BstV1I GCAGC 4 cut(s) 448, 491, 502, 973
BstXI CCANNNNNNTGG 2 cut(s) 630, 1158
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 194, 305, 498
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 2 cut(s) 122, 337
BtsCI GGATG 2 cut(s) 538, 688
BtsI GCAGTG 1 cut(s) 635
BtsIMutI CAGTG 2 cut(s) 282, 635
BveI ACCTGC 2 cut(s) 670, 912
Cac8I GCNNGC 4 cut(s) 12, 250, 718, 1141
CfoI GCGC 9 cut(s) 19, 167, 248, 293, 320, 392, 473, 559, 981
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 5 cut(s) 193, 376, 497, 892, 928
Cfr42I CCGCGG 1 cut(s) 309
Csp6I GTAC 2 cut(s) 430, 648
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviQI GTAC 2 cut(s) 430, 648
DdeI CTNAG 2 cut(s) 22, 447
DinI GGCGCC 3 cut(s) 319, 391, 472
DpnI GATC 4 cut(s) 486, 732, 831, 1008
DpnII GATC 4 cut(s) 484, 730, 829, 1006
DraI TTTAAA 1 cut(s) 328
DriI GACNNNNNGTC 2 cut(s) 340, 1038
Eam1104I CTCTTC 3 cut(s) 967, 1071, 1101
Eam1105I GACNNNNNGTC 2 cut(s) 340, 1038
EarI CTCTTC 3 cut(s) 967, 1071, 1101
EciI GGCGGA 2 cut(s) 142, 375
Eco130I CCWWGG 2 cut(s) 465, 623
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 3 cut(s) 376, 892, 928
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 2 cut(s) 376, 928
EcoRII CCWGG 4 cut(s) 276, 381, 493, 613
EcoT14I CCWWGG 2 cut(s) 465, 623
EgeI GGCGCC 3 cut(s) 319, 391, 472
EheI GGCGCC 3 cut(s) 319, 391, 472
ErhI CCWWGG 2 cut(s) 465, 623
Esp3I CGTCTC 1 cut(s) 1066
FaiI YATR 9 cut(s) 440, 489, 669, 780, 914, 984, 1005, 1092, 1098
FaqI GGGAC 1 cut(s) 878
FauI CCCGC 1 cut(s) 257
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
FokI GGATG 2 cut(s) 525, 695
Fsp4HI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
FspBI CTAG 1 cut(s) 1133
GlaI GCGC 9 cut(s) 18, 166, 247, 292, 319, 391, 472, 558, 980
GluI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
GsuI CTGGAG 2 cut(s) 365, 636
HaeII RGCGCY 5 cut(s) 20, 321, 393, 474, 982
HaeIII GGCC 3 cut(s) 194, 305, 498
HapII CCGG 4 cut(s) 11, 351, 500, 519
HhaI GCGC 9 cut(s) 19, 167, 248, 293, 320, 392, 473, 559, 981
Hin1I GRCGYC 3 cut(s) 318, 390, 471
Hin6I GCGC 9 cut(s) 17, 165, 246, 291, 318, 390, 471, 557, 979
HinP1I GCGC 9 cut(s) 17, 165, 246, 291, 318, 390, 471, 557, 979
HpaII CCGG 4 cut(s) 11, 351, 500, 519
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 3 cut(s) 161, 543, 708
Hpy188III TCNNGA 5 cut(s) 345, 446, 754, 791, 848
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 6 cut(s) 46, 115, 220, 517, 748, 946
HpyCH4III ACNGT 3 cut(s) 286, 314, 434
HpyCH4IV ACGT 2 cut(s) 121, 336
HpyCH4V TGCA 5 cut(s) 538, 568, 869, 881, 1143
HpyF3I CTNAG 2 cut(s) 22, 447
HpySE526I ACGT 2 cut(s) 121, 336
Hsp92I GRCGYC 3 cut(s) 318, 390, 471
HspAI GCGC 9 cut(s) 17, 165, 246, 291, 318, 390, 471, 557, 979
KasI GGCGCC 3 cut(s) 317, 389, 470
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Ksp22I TGATCA 1 cut(s) 484
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 4 cut(s) 484, 730, 829, 1006
LmnI GCTCC 6 cut(s) 81, 107, 148, 604, 616, 617
Lsp1109I GCAGC 4 cut(s) 448, 491, 502, 973
MaeI CTAG 1 cut(s) 1133
MaeII ACGT 2 cut(s) 121, 336
MalI GATC 4 cut(s) 486, 732, 831, 1008
MbiI CCGCTC 1 cut(s) 143
MboI GATC 4 cut(s) 484, 730, 829, 1006
MboII GAAGA 6 cut(s) 502, 556, 984, 1058, 1118, 1130
MfeI CAATTG 1 cut(s) 965
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 6 cut(s) 574, 725, 883, 965, 994, 1044
Mly113I GGCGCC 3 cut(s) 318, 390, 471
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 3 cut(s) 327, 687, 1165
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 3 cut(s) 308, 482, 1072
MspI CCGG 4 cut(s) 11, 351, 500, 519
MspR9I CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
MunI CAATTG 1 cut(s) 965
MvaI CCWGG 4 cut(s) 278, 383, 495, 615
MvnI CGCG 3 cut(s) 219, 246, 308
NaeI GCCGGC 1 cut(s) 12
NarI GGCGCC 3 cut(s) 318, 390, 471
NciI CCSGG 2 cut(s) 351, 500
NdeII GATC 4 cut(s) 484, 730, 829, 1006
NgoMIV GCCGGC 1 cut(s) 10
NlaIV GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
NspV TTCGAA 1 cut(s) 588
PaqCI CACCTGC 1 cut(s) 670
PdiI GCCGGC 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 2 cut(s) 381, 613
PkrI GCNGC 9 cut(s) 16, 295, 307, 463, 475, 478, 481, 517, 963
PluTI GGCGCC 3 cut(s) 321, 393, 474
PpuMI RGGWCCY 2 cut(s) 376, 928
Psp5II RGGWCCY 2 cut(s) 376, 928
Psp6I CCWGG 4 cut(s) 276, 381, 493, 613
PspGI CCWGG 4 cut(s) 276, 381, 493, 613
PspN4I GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
PspPI GGNCC 5 cut(s) 193, 376, 497, 892, 928
PspPPI RGGWCCY 2 cut(s) 376, 928
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 431, 649
RsaNI GTAC 2 cut(s) 430, 648
RseI CAYNNNNRTG 1 cut(s) 792
SacII CCGCGG 1 cut(s) 309
SaqAI TTAA 3 cut(s) 327, 687, 1165
SatI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
Sau3AI GATC 4 cut(s) 484, 730, 829, 1006
Sau96I GGNCC 5 cut(s) 193, 376, 497, 892, 928
ScrFI CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
SduI GDGCHC 1 cut(s) 622
SfoI GGCGCC 3 cut(s) 319, 391, 472
Sfr303I CCGCGG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 588
SgrAI CRCCGGYG 1 cut(s) 10
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 3 cut(s) 376, 892, 928
SmiMI CAYNNNNRTG 1 cut(s) 792
Sse9I AATT 6 cut(s) 574, 725, 883, 965, 994, 1044
SspDI GGCGCC 3 cut(s) 317, 389, 470
SspI AATATT 1 cut(s) 819
SspMI CTAG 1 cut(s) 1133
StyD4I CCNGG 6 cut(s) 276, 349, 381, 493, 498, 613
StyI CCWWGG 2 cut(s) 465, 623
TaaI ACNGT 3 cut(s) 286, 314, 434
TaiI ACGT 2 cut(s) 124, 339
TaqI TCGA 7 cut(s) 174, 344, 588, 790, 987, 1042, 1081
TasI AATT 6 cut(s) 574, 725, 883, 965, 994, 1044
TauI GCSGC 5 cut(s) 17, 296, 308, 476, 479
Tru1I TTAA 3 cut(s) 327, 687, 1165
Tru9I TTAA 3 cut(s) 327, 687, 1165
TscAI CASTG 2 cut(s) 289, 635
TseI GCWGC 4 cut(s) 461, 479, 515, 961
TspDTI ATGAA 1 cut(s) 686
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 2 cut(s) 289, 635
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 376, 892, 928
XapI RAATTY 2 cut(s) 725, 883
XcmI CCANNNNNNNNNTGG 2 cut(s) 611, 630
XspI CTAG 1 cut(s) 1133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.