Prupe.3G183400_v2.0.a1

Coproporphyrinogen-III oxidase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
19880071 .. 19883248
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G183400.1

Sequence Viewer

Length: 1167 bp
ATGCCACCACCAGCCACTCTCTCAGCTTCATCTTCCTTCACTCTCCTCTCTCCATCTCCCTCCCCAAAACCAAAGTTCCCTTCTTTCTTCCCCAAAAGACACTCCTTCGCAATCAACCCACGTCACCATTCCCTCCACTCAGTTCCCTCCTCCACCGTCCGATGCGCCGTCATCGAGAAAGAAACCCCGGAGGCCCAGCGGCCCGACACCTTCCTCCGCGCCAACTCCTCGTCGTCCTCCGTGCGGGCCCGCTTCGAGAAGATGATAAGAGAAGCCCAAGACACCGTCTGCGCCGCCATTGAGGCCGCGGACGGCGGTGCCACCTTTAAAGAGGACGTGTGGTCGAGGCCCGGTGGCGGTGGAGGCATCAGCAGGGTCCTCCAAGACGGCGCCGTTTGGGAGAAGGCCGGTGTCAATGTCTCTGTTGTCTACGGCGTTATGCCTCCCGAGGCATACCGAGCTGCCAAGGGTGCCGCCGCAGCTGATCACAAGCCGGGCCCGGTTCCTTTCTTCGCCTCCGGAATTAGCTCGGTTTTGCATCCAAAGAACCCTTTTGCACCTACTTTGCATTTCAATTATCGGTATTTCGAAACGGATGCTCCGCAAGATGTTCCTGGAGCACCTAGGCAATGGTGGTTCGGTGGCGGAACTGACTTGACACCTGCTTATATTTTTGAGGAGGATGTTAAGCATTTTCATCAAGTCCAGAAAAGTGCTTGCGACAAATTTGATCCTACCTTCTATCCTCGGTTCAAGAAATGGTGTGATGATTATTTCTATATTAAGCATCGAGATGAGAGGCGAGGGCTTGGAGGAATATTTTTTGATGATCTAAATGACTATGATCAGGAGATGCTTCTTTCCTTTGCCACTGAATGTGCAAATTCTGTGGTCCCTGCTTACATACCAATTATAGAGAAAAGGAAGGATCTACCATTTACAGATCAGCAAAAGGCATGGCAGCAATTGCGAAGAGGGCGCTATGTTGAATTCAATTTGGTTTATGATCGTGGAACAACTTTTGGACTAAAGACGGGAGGTCGAATTGAGAGTATTCTTGTCTCTCTTCCACTGACTGCTCGGTGGGAATATGACCATAAACCAGAAGAGGGAAGTGAAGAATGGAAACTGTTAGATGCTTGCATCAACCCAAAGGAGTGGGTATAA

Protein Analysis

389

Amino Acids

43.62

Weight (kDa)

6.84

Isoelectric Point (pI)

61.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011336)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 670
Acc36I ACCTGC 1 cut(s) 670
AccB1I GGYRCC 3 cut(s) 317, 389, 470
AccI GTMKAC 1 cut(s) 429
AccII CGCG 2 cut(s) 219, 308
AccIII TCCGGA 1 cut(s) 518
AclWI GGATC 2 cut(s) 725, 936
AcsI RAATTY 3 cut(s) 725, 883, 989
AcyI GRCGYC 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 243, 356, 1109
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 4 cut(s) 574, 754, 989, 994
AhdI GACNNNNNGTC 2 cut(s) 340, 1038
AjiI CACGTC 2 cut(s) 122, 337
AjnI CCWGG 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 64, 96
AluBI AGCT 4 cut(s) 26, 461, 482, 528
AluI AGCT 4 cut(s) 26, 461, 482, 528
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 2 cut(s) 424, 1066
AlwI GGATC 2 cut(s) 725, 936
Ama87I CYCGRG 1 cut(s) 446
Aor13HI TCCGGA 1 cut(s) 518
AoxI GGCC 7 cut(s) 192, 200, 246, 303, 347, 405, 496
ApaI GGGCCC 2 cut(s) 250, 500
ApeKI GCWGC 3 cut(s) 461, 479, 961
ApoI RAATTY 3 cut(s) 725, 883, 989
AspA2I CCTAGG 1 cut(s) 623
AspLEI GCGC 5 cut(s) 167, 221, 293, 392, 981
AspS9I GGNCC 9 cut(s) 193, 201, 246, 247, 348, 376, 496, 497, 892
AsuC2I CCSGG 4 cut(s) 188, 351, 495, 500
AsuHPI GGTGA 1 cut(s) 116
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 2 cut(s) 376, 892
AvrII CCTAGG 1 cut(s) 623
BaeGI GKGCMC 2 cut(s) 250, 500
BanI GGYRCC 3 cut(s) 317, 389, 470
BanII GRGCYC 2 cut(s) 250, 500
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 3 cut(s) 448, 491, 973
BccI CCATC 1 cut(s) 61
BceAI ACGGC 5 cut(s) 152, 328, 377, 403, 448
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 2 cut(s) 484, 844
BcnI CCSGG 4 cut(s) 188, 351, 495, 500
BcoDI GTCTC 2 cut(s) 424, 1066
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 2 cut(s) 393, 982
BfuAI ACCTGC 1 cut(s) 670
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 8 cut(s) 200, 294, 306, 462, 474, 477, 480, 962
BlnI CCTAGG 1 cut(s) 623
BlsI GCNGC 8 cut(s) 201, 295, 307, 463, 475, 478, 481, 963
Bme1390I CCNGG 5 cut(s) 188, 351, 495, 500, 615
Bme18I GGWCC 2 cut(s) 376, 892
BmeRI GACNNNNNGTC 2 cut(s) 340, 1038
BmeT110I CYCGRG 1 cut(s) 446
BmgBI CACGTC 2 cut(s) 122, 337
BmgT120I GGNCC 9 cut(s) 193, 201, 246, 247, 348, 376, 496, 497, 892
BmiI GGNNCC 8 cut(s) 248, 319, 377, 391, 472, 498, 504, 894
BmrFI CCNGG 5 cut(s) 188, 351, 495, 500, 615
BmsI GCATC 8 cut(s) 152, 375, 547, 586, 796, 843, 1126, 1152
BpmI CTGGAG 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 4 cut(s) 188, 351, 495, 500
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 6 cut(s) 186, 306, 447, 465, 623, 746
BsaWI WCCGGW 1 cut(s) 518
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 3 cut(s) 243, 356, 1109
Bse118I RCCGGY 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 635
BseAI TCCGGA 1 cut(s) 518
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 6 cut(s) 186, 306, 447, 465, 623, 746
BseGI GGATG 3 cut(s) 538, 601, 688
BseLI CCNNNNNNNGG 3 cut(s) 243, 356, 1109
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 2 cut(s) 36, 153
BseRI GAGGAG 4 cut(s) 35, 139, 217, 692
BseSI GKGCMC 2 cut(s) 250, 500
BseXI GCAGC 3 cut(s) 448, 491, 973
BseYI CCCAGC 1 cut(s) 195
Bsh1236I CGCG 2 cut(s) 219, 308
BshFI GGCC 7 cut(s) 194, 202, 248, 305, 349, 407, 498
BshNI GGYRCC 3 cut(s) 317, 389, 470
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 6 cut(s) 188, 351, 408, 494, 500, 519
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 3 cut(s) 243, 356, 1109
BsmAI GTCTC 2 cut(s) 424, 1066
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 7 cut(s) 194, 202, 248, 305, 349, 407, 498
BsoBI CYCGRG 1 cut(s) 446
Bsp119I TTCGAA 1 cut(s) 588
Bsp120I GGGCCC 2 cut(s) 246, 496
Bsp1286I GDGCHC 3 cut(s) 250, 500, 622
Bsp13I TCCGGA 1 cut(s) 518
Bsp143I GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
BspANI GGCC 7 cut(s) 194, 202, 248, 305, 349, 407, 498
BspCNI CTCAG 2 cut(s) 35, 152
BspEI TCCGGA 1 cut(s) 518
BspFNI CGCG 2 cut(s) 219, 308
BspLI GGNNCC 8 cut(s) 248, 319, 377, 391, 472, 498, 504, 894
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 2 cut(s) 725, 936
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 3 cut(s) 317, 389, 470
BsrDI GCAATG 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 407
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 6 cut(s) 186, 306, 447, 465, 623, 746
BssMI GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 2 cut(s) 465, 623
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 3 cut(s) 157, 286, 1131
Bst6I CTCTTC 3 cut(s) 967, 1071, 1101
BstACI GRCGYC 1 cut(s) 390
BstAPI GCANNNNNTGC 1 cut(s) 967
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 4 cut(s) 246, 250, 718, 1141
BstDEI CTNAG 2 cut(s) 22, 139
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 3 cut(s) 538, 601, 688
BstFNI CGCG 2 cut(s) 219, 308
BstH2I RGCGCY 2 cut(s) 393, 982
BstHHI GCGC 5 cut(s) 167, 221, 293, 392, 981
BstKTI GATC 7 cut(s) 487, 733, 832, 847, 931, 946, 1009
BstMAI GTCTC 2 cut(s) 424, 1066
BstMBI GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
BstMWI GCNNNNNNNGC 7 cut(s) 302, 363, 458, 470, 479, 967, 976
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 5 cut(s) 186, 349, 493, 498, 613
BstSLI GKGCMC 2 cut(s) 250, 500
BstUI CGCG 2 cut(s) 219, 308
BstV1I GCAGC 3 cut(s) 448, 491, 973
BstX2I RGATCY 1 cut(s) 928
BstXI CCANNNNNNTGG 1 cut(s) 1158
BstYI RGATCY 1 cut(s) 928
BsuRI GGCC 7 cut(s) 194, 202, 248, 305, 349, 407, 498
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 2 cut(s) 122, 337
BtsCI GGATG 3 cut(s) 538, 601, 688
BtsIMutI CAGTG 2 cut(s) 870, 1070
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 4 cut(s) 246, 250, 718, 1141
CfoI GCGC 5 cut(s) 167, 221, 293, 392, 981
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 9 cut(s) 193, 201, 246, 247, 348, 376, 496, 497, 892
Cfr42I CCGCGG 1 cut(s) 309
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 1 cut(s) 957
DdeI CTNAG 2 cut(s) 22, 139
DinI GGCGCC 1 cut(s) 391
DpnI GATC 7 cut(s) 486, 732, 831, 846, 930, 945, 1008
DpnII GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
DraI TTTAAA 1 cut(s) 328
DriI GACNNNNNGTC 2 cut(s) 340, 1038
Eam1104I CTCTTC 3 cut(s) 967, 1071, 1101
Eam1105I GACNNNNNGTC 2 cut(s) 340, 1038
EarI CTCTTC 3 cut(s) 967, 1071, 1101
EciI GGCGGA 1 cut(s) 660
Eco130I CCWWGG 2 cut(s) 465, 623
Eco24I GRGCYC 2 cut(s) 250, 500
Eco47I GGWCC 2 cut(s) 376, 892
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 376
EcoRI GAATTC 1 cut(s) 989
EcoRII CCWGG 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 465, 623
EcoT38I GRGCYC 2 cut(s) 250, 500
EgeI GGCGCC 1 cut(s) 391
EheI GGCGCC 1 cut(s) 391
ErhI CCWWGG 2 cut(s) 465, 623
FaeI CATG 1 cut(s) 960
FaqI GGGAC 1 cut(s) 878
FatI CATG 1 cut(s) 956
FauI CCCGC 2 cut(s) 237, 257
FbaI TGATCA 2 cut(s) 484, 844
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 8 cut(s) 200, 294, 306, 462, 474, 477, 480, 962
FokI GGATG 3 cut(s) 525, 608, 695
FriOI GRGCYC 2 cut(s) 250, 500
Fsp4HI GCNGC 8 cut(s) 200, 294, 306, 462, 474, 477, 480, 962
FspBI CTAG 1 cut(s) 624
GlaI GCGC 5 cut(s) 166, 220, 292, 391, 980
GluI GCNGC 8 cut(s) 200, 294, 306, 462, 474, 477, 480, 962
GsaI CCCAGC 1 cut(s) 199
GsuI CTGGAG 1 cut(s) 636
HaeII RGCGCY 2 cut(s) 393, 982
HaeIII GGCC 7 cut(s) 194, 202, 248, 305, 349, 407, 498
HapII CCGG 6 cut(s) 188, 351, 408, 494, 500, 519
HhaI GCGC 5 cut(s) 167, 221, 293, 392, 981
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 1 cut(s) 960
Hin6I GCGC 5 cut(s) 165, 219, 291, 390, 979
HinP1I GCGC 5 cut(s) 165, 219, 291, 390, 979
HpaII CCGG 6 cut(s) 188, 351, 408, 494, 500, 519
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 430
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 8 cut(s) 175, 256, 446, 519, 706, 754, 791, 848
Hpy8I GTNNAC 1 cut(s) 430
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 7 cut(s) 46, 90, 115, 220, 397, 748, 919
HpyCH4III ACNGT 3 cut(s) 157, 286, 1131
HpyCH4IV ACGT 2 cut(s) 121, 336
HpyCH4V TGCA 5 cut(s) 538, 557, 568, 881, 1143
HpyF10VI GCNNNNNNNGC 7 cut(s) 302, 363, 458, 470, 479, 967, 976
HpyF3I CTNAG 2 cut(s) 22, 139
HpySE526I ACGT 2 cut(s) 121, 336
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 1 cut(s) 960
HspAI GCGC 5 cut(s) 165, 219, 291, 390, 979
KasI GGCGCC 1 cut(s) 389
Kpn2I TCCGGA 1 cut(s) 518
Ksp22I TGATCA 2 cut(s) 484, 844
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
LmnI GCTCC 2 cut(s) 604, 617
Lsp1109I GCAGC 3 cut(s) 448, 491, 973
LweI GCATC 8 cut(s) 152, 375, 547, 586, 796, 843, 1126, 1152
MaeI CTAG 1 cut(s) 624
MaeII ACGT 2 cut(s) 121, 336
MaeIII GTNAC 1 cut(s) 122
MalI GATC 7 cut(s) 486, 732, 831, 846, 930, 945, 1008
MboI GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
MboII GAAGA 8 cut(s) 24, 79, 271, 502, 984, 1058, 1118, 1130
MfeI CAATTG 1 cut(s) 965
MflI RGATCY 1 cut(s) 928
MhlI GDGCHC 3 cut(s) 250, 500, 622
MluCI AATT 9 cut(s) 522, 574, 725, 883, 909, 965, 989, 994, 1044
Mly113I GGCGCC 1 cut(s) 390
MroI TCCGGA 1 cut(s) 518
MseI TTAA 3 cut(s) 327, 687, 783
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 3 cut(s) 199, 308, 482
MspI CCGG 6 cut(s) 188, 351, 408, 494, 500, 519
MspR9I CCNGG 5 cut(s) 188, 351, 495, 500, 615
MunI CAATTG 1 cut(s) 965
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 2 cut(s) 219, 308
MwoI GCNNNNNNNGC 7 cut(s) 302, 363, 458, 470, 479, 967, 976
NarI GGCGCC 1 cut(s) 390
NciI CCSGG 4 cut(s) 188, 351, 495, 500
NdeII GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
NlaIII CATG 1 cut(s) 960
NlaIV GGNNCC 8 cut(s) 248, 319, 377, 391, 472, 498, 504, 894
NmuCI GTSAC 1 cut(s) 122
NspV TTCGAA 1 cut(s) 588
PaqCI CACCTGC 1 cut(s) 670
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 8 cut(s) 201, 295, 307, 463, 475, 478, 481, 963
PluTI GGCGCC 1 cut(s) 393
PpuMI RGGWCCY 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 8 cut(s) 248, 319, 377, 391, 472, 498, 504, 894
PspOMI GGGCCC 2 cut(s) 246, 496
PspPI GGNCC 9 cut(s) 193, 201, 246, 247, 348, 376, 496, 497, 892
PspPPI RGGWCCY 1 cut(s) 376
PsuI RGATCY 1 cut(s) 928
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 792
SacII CCGCGG 1 cut(s) 309
SaqAI TTAA 3 cut(s) 327, 687, 783
SatI GCNGC 8 cut(s) 200, 294, 306, 462, 474, 477, 480, 962
Sau3AI GATC 7 cut(s) 484, 730, 829, 844, 928, 943, 1006
Sau96I GGNCC 9 cut(s) 193, 201, 246, 247, 348, 376, 496, 497, 892
ScrFI CCNGG 5 cut(s) 188, 351, 495, 500, 615
SduI GDGCHC 3 cut(s) 250, 500, 622
SfaNI GCATC 8 cut(s) 152, 375, 547, 586, 796, 843, 1126, 1152
SfoI GGCGCC 1 cut(s) 391
Sfr303I CCGCGG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 588
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 2 cut(s) 376, 892
SmiMI CAYNNNNRTG 1 cut(s) 792
Sse9I AATT 9 cut(s) 522, 574, 725, 883, 909, 965, 989, 994, 1044
SspDI GGCGCC 1 cut(s) 389
SspI AATATT 1 cut(s) 819
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 5 cut(s) 186, 349, 493, 498, 613
StyI CCWWGG 2 cut(s) 465, 623
TaaI ACNGT 3 cut(s) 157, 286, 1131
TaiI ACGT 2 cut(s) 124, 339
TaqI TCGA 6 cut(s) 174, 255, 344, 588, 790, 1042
TasI AATT 9 cut(s) 522, 574, 725, 883, 909, 965, 989, 994, 1044
TauI GCSGC 5 cut(s) 202, 296, 308, 476, 479
Tru1I TTAA 3 cut(s) 327, 687, 783
Tru9I TTAA 3 cut(s) 327, 687, 783
TscAI CASTG 2 cut(s) 877, 1077
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 3 cut(s) 461, 479, 961
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 2 cut(s) 18, 686
TspGWI ACGGA 2 cut(s) 229, 608
TspRI CASTG 2 cut(s) 877, 1077
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 2 cut(s) 376, 892
XapI RAATTY 3 cut(s) 725, 883, 989
XmaJI CCTAGG 1 cut(s) 623
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 1 cut(s) 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.