MD09G1144600.v1.1

Coproporphyrinogen-III oxidase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
11247736 .. 11250970
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1144600.v1.1.491

Sequence Viewer

Length: 1167 bp
ATGCCACCGCCGGCGGCGCTCTCAGCTTCCTCCTCCTTCACTCTCCTCTCCCCACCTCCCTCCCCAAAACCAAAGCTCCCGCCTTTCTCCCCCAGAAAACGCTCCTTTGCCATCACCCCACGTCGCCACCTCCTCCACTCCGCCCCCTCCTCCGCCGTCCGATGCGCCGTCATCGAAAAAGAAACCCCCGAGGCCCACCGCCCCGATACCTTCCTCCGCGAGAACTCCTCCTCGTCCTCCGTCCGCTACCGCTTTGAGAAAATGATAAGAGATGCCCAGGACACTGTCTGCGCCGCCATTGAGGCCGCGGACGGTGGCGCCACATTTAAAGAGGACGTGTGGTCGAGACCCGGTGGTGGCGGAGGCATTAGCAGGGTCCTCCAGGACGGCGCCGTTTGGGAGAAGGCTGGTGTCAATGTCTCTGTTGTGTACGGTGTTATGCCTCCTGAGGCTTACCGAGCTGCCAAGGGCGCCGCCGCAGCTGATCATAAGCCTGGCCCGGTTCCCTTCTTCGCGGCCGGAGTTAGCTCGGTTTTGCATCCGAAGAACCCATTTGCGCCTACTTTGCATTTCAATTATCGGTATTTCGAAACCGATGCTCCCCAAGATGCTCCTGGAGCACCGAGGCAATGGTGGTTTGGGGGTGGTACTGACTTGACACCTGCTTATATTTTTGAGGAGGATGTTAAGCATTTTCATTCAGTTCAGAAAAGTGCTTGCGACAAATTTGATCCTGCCTTCTATCCTCGGTTCAAGAAATGGTGTGATGATTATTTCTATATCAAGCATCGAGATGAGAGGCGAGGACTTGGAGGAATATTTTTTGATGATCTAAATGACTACGATCAGGAGATGCTTCTTTCTTTTGCCACAGAATGTGCAAATTCTGTGGTCCCTGCTTACCTGCCGATTATAGAGAAAAGAAAGGACCTACCATTTACAGATCAGCAGAAGGAATGGCAGCAATTGCGAAGAGGGCGCTATGTCGAGTTCAATTTGGTTTATGATCGTGGAACTACTTTTGGACTAAAGACGGGAGGTCGAATTGAGAGTATTCTTGTCTCTCTTCCACTGACTGCTCGATGGGAATATGACCGTAAACCAGAAGAGGGAAGCGAAGAATGGAAACTATTAGATGCTTGCATCAACCCAAAGGAATGGGTTTAA

Protein Analysis

389

Amino Acids

43.6

Weight (kDa)

7.11

Isoelectric Point (pI)

63.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Coprogen_oxidas PF01218 85 - 387 5.5e-137 Coproporphyrinogen III oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011336)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 670
Acc36I ACCTGC 2 cut(s) 670, 912
AccB1I GGYRCC 3 cut(s) 317, 389, 470
AccII CGCG 3 cut(s) 219, 308, 515
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 2 cut(s) 725, 883
AcyI GRCGYC 3 cut(s) 318, 390, 471
AfaI GTAC 2 cut(s) 431, 649
AfiI CCNNNNNNNGG 2 cut(s) 356, 1109
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 3 cut(s) 574, 754, 994
AhdI GACNNNNNGTC 2 cut(s) 340, 1038
AjiI CACGTC 2 cut(s) 122, 337
AjnI CCWGG 4 cut(s) 276, 381, 493, 613
AluBI AGCT 5 cut(s) 26, 76, 461, 482, 528
AluI AGCT 5 cut(s) 26, 76, 461, 482, 528
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 3 cut(s) 340, 424, 1066
AlwI GGATC 1 cut(s) 725
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 4 cut(s) 192, 303, 496, 516
ApeKI GCWGC 3 cut(s) 461, 479, 961
ApoI RAATTY 2 cut(s) 725, 883
AspLEI GCGC 8 cut(s) 19, 167, 293, 320, 392, 473, 559, 981
AspS9I GGNCC 5 cut(s) 193, 376, 497, 892, 928
AsuC2I CCSGG 2 cut(s) 351, 500
AsuHPI GGTGA 1 cut(s) 106
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 376, 892, 928
AxyI CCTNAGG 1 cut(s) 447
BanI GGYRCC 3 cut(s) 317, 389, 470
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 3 cut(s) 448, 491, 973
BccI CCATC 2 cut(s) 119, 1077
BceAI ACGGC 4 cut(s) 140, 152, 377, 403
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 4 cut(s) 278, 383, 495, 615
BclI TGATCA 1 cut(s) 484
BcnI CCSGG 2 cut(s) 351, 500
BcoDI GTCTC 3 cut(s) 340, 424, 1066
BfoI RGCGCY 5 cut(s) 20, 321, 393, 474, 982
BfuAI ACCTGC 2 cut(s) 670, 912
BglI GCCNNNNNGGC 1 cut(s) 302
BisI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
BlsI GCNGC 9 cut(s) 16, 295, 307, 463, 475, 478, 481, 517, 963
Bme1390I CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
Bme18I GGWCC 3 cut(s) 376, 892, 928
BmeRI GACNNNNNGTC 2 cut(s) 340, 1038
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 2 cut(s) 122, 337
BmgT120I GGNCC 5 cut(s) 193, 376, 497, 892, 928
BmiI GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
BmrFI CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
BmsI GCATC 9 cut(s) 152, 262, 547, 586, 598, 796, 843, 1126, 1152
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 2 cut(s) 365, 636
Bpu14I TTCGAA 1 cut(s) 588
BpuMI CCSGG 2 cut(s) 351, 500
BsaHI GRCGYC 3 cut(s) 318, 390, 471
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 6 cut(s) 189, 276, 306, 465, 623, 746
BsaXI ACNNNNNCTCC 4 cut(s) 60, 90, 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 1109
Bse118I RCCGGY 1 cut(s) 10
Bse21I CCTNAGG 1 cut(s) 447
Bse3DI GCAATG 1 cut(s) 635
BseBI CCWGG 4 cut(s) 278, 383, 495, 615
BseDI CCNNGG 6 cut(s) 189, 276, 306, 465, 623, 746
BseGI GGATG 2 cut(s) 538, 688
BseLI CCNNNNNNNGG 2 cut(s) 356, 1109
BseMI GCAATG 1 cut(s) 635
BseMII CTCAG 2 cut(s) 36, 438
BseRI GAGGAG 7 cut(s) 22, 35, 122, 139, 217, 220, 692
BseX3I CGGCCG 1 cut(s) 516
BseXI GCAGC 3 cut(s) 448, 491, 973
Bsh1236I CGCG 3 cut(s) 219, 308, 515
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 4 cut(s) 194, 305, 498, 518
BshNI GGYRCC 3 cut(s) 317, 389, 470
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 4 cut(s) 11, 351, 500, 519
BslFI GGGAC 1 cut(s) 878
BslI CCNNNNNNNGG 2 cut(s) 356, 1109
BsmAI GTCTC 3 cut(s) 340, 424, 1066
BsmFI GGGAC 1 cut(s) 878
BsnI GGCC 4 cut(s) 194, 305, 498, 518
Bso31I GGTCTC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 188
Bsp119I TTCGAA 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
BspANI GGCC 4 cut(s) 194, 305, 498, 518
BspCNI CTCAG 2 cut(s) 35, 439
BspFNI CGCG 3 cut(s) 219, 308, 515
BspLI GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
BspMI ACCTGC 2 cut(s) 670, 912
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 588
BspT107I GGYRCC 3 cut(s) 317, 389, 470
BspTNI GGTCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 635
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 6 cut(s) 189, 276, 306, 465, 623, 746
BssMI GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
BssNI GRCGYC 3 cut(s) 318, 390, 471
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 4 cut(s) 278, 383, 495, 615
Bst4CI ACNGT 4 cut(s) 286, 314, 434, 1097
Bst6I CTCTTC 3 cut(s) 967, 1071, 1101
BstACI GRCGYC 3 cut(s) 318, 390, 471
BstAPI GCANNNNNTGC 1 cut(s) 967
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 3 cut(s) 12, 718, 1141
BstDEI CTNAG 2 cut(s) 22, 447
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 2 cut(s) 538, 688
BstFNI CGCG 3 cut(s) 219, 308, 515
BstH2I RGCGCY 5 cut(s) 20, 321, 393, 474, 982
BstHHI GCGC 8 cut(s) 19, 167, 293, 320, 392, 473, 559, 981
BstKTI GATC 6 cut(s) 487, 733, 832, 847, 946, 1009
BstMAI GTCTC 3 cut(s) 340, 424, 1066
BstMBI GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
BstMCI CGRYCG 1 cut(s) 519
BstNI CCWGG 4 cut(s) 278, 383, 495, 615
BstSCI CCNGG 6 cut(s) 276, 349, 381, 493, 498, 613
BstUI CGCG 3 cut(s) 219, 308, 515
BstV1I GCAGC 3 cut(s) 448, 491, 973
BstXI CCANNNNNNTGG 1 cut(s) 1158
BstZI CGGCCG 1 cut(s) 516
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 4 cut(s) 194, 305, 498, 518
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 2 cut(s) 122, 337
BtsCI GGATG 2 cut(s) 538, 688
BtsIMutI CAGTG 2 cut(s) 282, 1070
BveI ACCTGC 2 cut(s) 670, 912
Cac8I GCNNGC 3 cut(s) 12, 718, 1141
CfoI GCGC 8 cut(s) 19, 167, 293, 320, 392, 473, 559, 981
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 5 cut(s) 193, 376, 497, 892, 928
Cfr42I CCGCGG 1 cut(s) 309
Csp6I GTAC 2 cut(s) 430, 648
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviQI GTAC 2 cut(s) 430, 648
DdeI CTNAG 2 cut(s) 22, 447
DinI GGCGCC 3 cut(s) 319, 391, 472
DpnI GATC 6 cut(s) 486, 732, 831, 846, 945, 1008
DpnII GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
DraI TTTAAA 1 cut(s) 328
DriI GACNNNNNGTC 2 cut(s) 340, 1038
EaeI YGGCCR 1 cut(s) 516
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 3 cut(s) 967, 1071, 1101
Eam1105I GACNNNNNGTC 2 cut(s) 340, 1038
EarI CTCTTC 3 cut(s) 967, 1071, 1101
EciI GGCGGA 3 cut(s) 130, 142, 375
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 3 cut(s) 376, 892, 928
Eco52I CGGCCG 1 cut(s) 516
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 2 cut(s) 376, 928
EcoRII CCWGG 4 cut(s) 276, 381, 493, 613
EcoT14I CCWWGG 1 cut(s) 465
EgeI GGCGCC 3 cut(s) 319, 391, 472
EheI GGCGCC 3 cut(s) 319, 391, 472
ErhI CCWWGG 1 cut(s) 465
FaiI YATR 8 cut(s) 440, 489, 669, 780, 914, 984, 1005, 1092
FaqI GGGAC 1 cut(s) 878
FauI CCCGC 1 cut(s) 87
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
FokI GGATG 2 cut(s) 525, 695
Fsp4HI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
GlaI GCGC 8 cut(s) 18, 166, 292, 319, 391, 472, 558, 980
GluI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
GsuI CTGGAG 2 cut(s) 365, 636
HaeII RGCGCY 5 cut(s) 20, 321, 393, 474, 982
HaeIII GGCC 4 cut(s) 194, 305, 498, 518
HapII CCGG 4 cut(s) 11, 351, 500, 519
HhaI GCGC 8 cut(s) 19, 167, 293, 320, 392, 473, 559, 981
Hin1I GRCGYC 3 cut(s) 318, 390, 471
Hin6I GCGC 8 cut(s) 17, 165, 291, 318, 390, 471, 557, 979
HinP1I GCGC 8 cut(s) 17, 165, 291, 318, 390, 471, 557, 979
HpaII CCGG 4 cut(s) 11, 351, 500, 519
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 430, 1100
Hpy188I TCNGA 3 cut(s) 161, 543, 708
Hpy188III TCNNGA 5 cut(s) 345, 446, 754, 791, 848
Hpy8I GTNNAC 2 cut(s) 430, 1100
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 6 cut(s) 46, 220, 397, 517, 748, 946
HpyCH4III ACNGT 4 cut(s) 286, 314, 434, 1097
HpyCH4IV ACGT 2 cut(s) 121, 336
HpyCH4V TGCA 4 cut(s) 538, 568, 881, 1143
HpyF3I CTNAG 2 cut(s) 22, 447
HpySE526I ACGT 2 cut(s) 121, 336
Hsp92I GRCGYC 3 cut(s) 318, 390, 471
HspAI GCGC 8 cut(s) 17, 165, 291, 318, 390, 471, 557, 979
KasI GGCGCC 3 cut(s) 317, 389, 470
KroI GCCGGC 1 cut(s) 10
KroNI GCCGGC 1 cut(s) 12
Ksp22I TGATCA 1 cut(s) 484
KspI CCGCGG 1 cut(s) 309
Kzo9I GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
LmnI GCTCC 5 cut(s) 81, 107, 604, 616, 617
Lsp1109I GCAGC 3 cut(s) 448, 491, 973
LweI GCATC 9 cut(s) 152, 262, 547, 586, 598, 796, 843, 1126, 1152
MaeII ACGT 2 cut(s) 121, 336
MalI GATC 6 cut(s) 486, 732, 831, 846, 945, 1008
MboI GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
MboII GAAGA 6 cut(s) 502, 556, 984, 1058, 1118, 1130
MfeI CAATTG 1 cut(s) 965
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 6 cut(s) 574, 725, 883, 965, 994, 1044
Mly113I GGCGCC 3 cut(s) 318, 390, 471
MreI CGCCGGCG 1 cut(s) 10
MroNI GCCGGC 1 cut(s) 10
MseI TTAA 3 cut(s) 327, 687, 1165
MslI CAYNNNNRTG 1 cut(s) 792
MspA1I CMGCKG 2 cut(s) 308, 482
MspI CCGG 4 cut(s) 11, 351, 500, 519
MspR9I CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
MunI CAATTG 1 cut(s) 965
MvaI CCWGG 4 cut(s) 278, 383, 495, 615
MvnI CGCG 3 cut(s) 219, 308, 515
NaeI GCCGGC 1 cut(s) 12
NarI GGCGCC 3 cut(s) 318, 390, 471
NciI CCSGG 2 cut(s) 351, 500
NdeII GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
NgoMIV GCCGGC 1 cut(s) 10
NlaIV GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
NspV TTCGAA 1 cut(s) 588
PaqCI CACCTGC 1 cut(s) 670
PdiI GCCGGC 1 cut(s) 12
PflFI GACNNNGTC 1 cut(s) 284
PfoI TCCNGGA 2 cut(s) 381, 613
PkrI GCNGC 9 cut(s) 16, 295, 307, 463, 475, 478, 481, 517, 963
PluTI GGCGCC 3 cut(s) 321, 393, 474
PpuMI RGGWCCY 2 cut(s) 376, 928
Psp5II RGGWCCY 2 cut(s) 376, 928
Psp6I CCWGG 4 cut(s) 276, 381, 493, 613
PspGI CCWGG 4 cut(s) 276, 381, 493, 613
PspN4I GGNNCC 6 cut(s) 319, 377, 391, 472, 504, 894
PspPI GGNCC 5 cut(s) 193, 376, 497, 892, 928
PspPPI RGGWCCY 2 cut(s) 376, 928
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 482
RsaI GTAC 2 cut(s) 431, 649
RsaNI GTAC 2 cut(s) 430, 648
RseI CAYNNNNRTG 1 cut(s) 792
SacII CCGCGG 1 cut(s) 309
SaqAI TTAA 3 cut(s) 327, 687, 1165
SatI GCNGC 9 cut(s) 15, 294, 306, 462, 474, 477, 480, 516, 962
Sau3AI GATC 6 cut(s) 484, 730, 829, 844, 943, 1006
Sau96I GGNCC 5 cut(s) 193, 376, 497, 892, 928
ScrFI CCNGG 6 cut(s) 278, 351, 383, 495, 500, 615
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 9 cut(s) 152, 262, 547, 586, 598, 796, 843, 1126, 1152
SfoI GGCGCC 3 cut(s) 319, 391, 472
Sfr303I CCGCGG 1 cut(s) 309
SfuI TTCGAA 1 cut(s) 588
SgrAI CRCCGGYG 1 cut(s) 10
SgrBI CCGCGG 1 cut(s) 309
SinI GGWCC 3 cut(s) 376, 892, 928
SmiMI CAYNNNNRTG 1 cut(s) 792
Sse9I AATT 6 cut(s) 574, 725, 883, 965, 994, 1044
SspDI GGCGCC 3 cut(s) 317, 389, 470
SspI AATATT 1 cut(s) 819
StyD4I CCNGG 6 cut(s) 276, 349, 381, 493, 498, 613
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 4 cut(s) 286, 314, 434, 1097
TaiI ACGT 2 cut(s) 124, 339
TaqI TCGA 7 cut(s) 174, 344, 588, 790, 987, 1042, 1081
TasI AATT 6 cut(s) 574, 725, 883, 965, 994, 1044
TauI GCSGC 6 cut(s) 17, 296, 308, 476, 479, 518
Tru1I TTAA 3 cut(s) 327, 687, 1165
Tru9I TTAA 3 cut(s) 327, 687, 1165
TscAI CASTG 2 cut(s) 289, 1077
TseI GCWGC 3 cut(s) 461, 479, 961
TspDTI ATGAA 1 cut(s) 686
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 2 cut(s) 289, 1077
Tth111I GACNNNGTC 1 cut(s) 284
VpaK11BI GGWCC 3 cut(s) 376, 892, 928
XapI RAATTY 2 cut(s) 725, 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.