Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000218.1

Orthogroup ID

OG0011336

Physical Location & Seq

Genomic Coordinates Forward (+)

6107 .. 9990

Gene Structure 3884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000218.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgccgccaccagccacactctcagcttcttcctccttcaccctcctctccccatctccctccccatctccaaagctcgcttctttccactccaaacaccattccttccactccgccacgcgcttcacgcgcctccgcggcgcccgctcactcgctccgcgatgcgcagtcatcgagaaagagacgccggagacggaaaagcccgatactttcctccgcgagtcgtcgtcgccgacctcagtccgggcccggttcgagaagatgatacgggaggcgcaggacacagtgtgtgaggccatcgccgccgcggacggcgtaggcaagtttaaggaggacgtgtggtcgaggccgggcggcggtggaggtatcagtagagtcctccaaaacggcgccgtttgggagaaggctggggttaatgtgtctgttgtgtatggagttatgcctcctgaggcttatagagctgccaagggcgccgccactgatcacaagcccggcccggttccgttcttcgccgccggaattagctcggttttgcatccaaagaacccttttgctcctactttgcatttcaattatcggtattttgaaacagatgctccccaagatgctcctggagcacctaggcaatggtggtttggaggtggaactgacttgacgcctgcttatatttttgaggaggatgttaaacattttcattcagttcagaaaagtgcttgcgacaaatttgatcctaccttctatcctcggttcaagaaatggtctgccagctcggcccagcatgcatgtgaggtgactgttgcgaccgacaaccatagagtgacgcggagaagacgacgcgtggaggggatgcaccaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Coprogen_oxidas

Protein Analysis

285

Amino Acids

31.37

Weight (kDa)

9.46

Isoelectric Point (pI)

60.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03475 AT4G03205 AT4G03205
fragaria_vesca	FvH4_6g39170
malus_domestica	MD09G1144600.v1.1 MD17G1131200.v1.1
prunus_persica	Prupe.3G183400_v2.0.a1
pyrus_communis	pycom09g06400 pycom17g12400
rosa_chinensis	RchiOBHm_Chr2g0153001
rosa_laevigata	RLG00000020666
rosa_multiflora	Rmu_sc0000218.1_g000004 Rmu_sc0000218.1_g000005
rosa_roxburghii	Rroxscaffold_2G00095310
rosa_rugosa	Rorug02G0436700
rosa_samantha	Rh2AG498700 Rh2BG510000 Rh2CG485000 Rh2DG521600
rosa_wichuraiana	Rw2G040930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	166
AccB1I	GGYRCC	3 cut(s)	140, 389, 470
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	8 cut(s)	121, 130, 138, 160, 219, 308, 823, 837
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	1 cut(s)	722
AcyI	GRCGYC	5 cut(s)	141, 185, 390, 471, 656
AdeI	CACNNNGTG	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	243, 356
AflIII	ACRYGT	2 cut(s)	336, 835
AgsI	TTSAA	3 cut(s)	571, 587, 751
AhdI	GACNNNNNGTC	1 cut(s)	340
AjiI	CACGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	5 cut(s)	26, 76, 461, 525, 768
AluI	AGCT	5 cut(s)	26, 76, 461, 525, 768
Alw21I	GWGCWC	1 cut(s)	619
Alw26I	GTCTC	2 cut(s)	176, 185
AlwI	GGATC	1 cut(s)	722
AoxI	GGCC	5 cut(s)	246, 294, 347, 493, 771
ApaI	GGGCCC	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	722
AspA2I	CCTAGG	1 cut(s)	620
AspLEI	GCGC	7 cut(s)	123, 132, 143, 167, 277, 392, 473
AspS9I	GGNCC	4 cut(s)	246, 247, 494, 772
AsuC2I	CCSGG	5 cut(s)	245, 250, 351, 492, 497
AsuHPI	GGTGA	2 cut(s)	31, 802
AvrII	CCTAGG	1 cut(s)	620
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	250
BanI	GGYRCC	3 cut(s)	140, 389, 470
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	835
Bbv12I	GWGCWC	1 cut(s)	619
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	3 cut(s)	61, 73, 305
BceAI	ACGGC	3 cut(s)	328, 377, 403
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	5 cut(s)	245, 250, 351, 492, 497
BcoDI	GTCTC	2 cut(s)	176, 185
BfaI	CTAG	1 cut(s)	621
BfoI	RGCGCY	3 cut(s)	144, 393, 474
BglI	GCCNNNNNGGC	2 cut(s)	138, 770
BisI	GCNGC	8 cut(s)	5, 139, 303, 306, 355, 462, 474, 513
BlnI	CCTAGG	1 cut(s)	620
BlsI	GCNGC	8 cut(s)	6, 140, 304, 307, 356, 463, 475, 514
Bme1390I	CCNGG	6 cut(s)	245, 250, 351, 492, 497, 612
BmeRI	GACNNNNNGTC	1 cut(s)	340
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	4 cut(s)	246, 247, 494, 772
BmiI	GGNNCC	5 cut(s)	142, 248, 391, 472, 501
BmrFI	CCNGG	6 cut(s)	245, 250, 351, 492, 497, 612
BmsI	GCATC	5 cut(s)	152, 544, 583, 595, 837
BoxI	GACNNNNGTC	1 cut(s)	239
BpiI	GAAGAC	1 cut(s)	835
BpmI	CTGGAG	1 cut(s)	633
BpuMI	CCSGG	5 cut(s)	245, 250, 351, 492, 497
BsaHI	GRCGYC	5 cut(s)	141, 185, 390, 471, 656
BsaJI	CCNNGG	5 cut(s)	136, 306, 465, 620, 743
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 580, 610
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 356
Bse21I	CCTNAGG	1 cut(s)	447
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	5 cut(s)	136, 306, 465, 620, 743
BseGI	GGATG	3 cut(s)	535, 685, 852
BseLI	CCNNNNNNNGG	2 cut(s)	243, 356
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	3 cut(s)	36, 252, 438
BseRI	GAGGAG	2 cut(s)	35, 689
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	1 cut(s)	448
BseYI	CCCAGC	2 cut(s)	407, 774
Bsh1236I	CGCG	8 cut(s)	121, 130, 138, 160, 219, 308, 823, 837
Bsh1285I	CGRYCG	1 cut(s)	804
BshFI	GGCC	5 cut(s)	248, 296, 349, 495, 773
BshNI	GGYRCC	3 cut(s)	140, 389, 470
BsiEI	CGRYCG	1 cut(s)	804
BsiHKAI	GWGCWC	1 cut(s)	619
BsiSI	CCGG	7 cut(s)	188, 244, 250, 350, 492, 497, 516
BslI	CCNNNNNNNGG	2 cut(s)	243, 356
BsmAI	GTCTC	2 cut(s)	176, 185
BsmBI	CGTCTC	2 cut(s)	176, 185
BsnI	GGCC	5 cut(s)	248, 296, 349, 495, 773
Bsp120I	GGGCCC	1 cut(s)	246
Bsp1286I	GDGCHC	2 cut(s)	250, 619
Bsp143I	GATC	2 cut(s)	481, 727
BspANI	GGCC	5 cut(s)	248, 296, 349, 495, 773
BspCNI	CTCAG	3 cut(s)	35, 251, 439
BspFNI	CGCG	8 cut(s)	121, 130, 138, 160, 219, 308, 823, 837
BspLI	GGNNCC	5 cut(s)	142, 248, 391, 472, 501
BspPI	GGATC	1 cut(s)	722
BspT107I	GGYRCC	3 cut(s)	140, 389, 470
BsrBI	CCGCTC	1 cut(s)	147
BsrDI	GCAATG	1 cut(s)	632
BssECI	CCNNGG	5 cut(s)	136, 306, 465, 620, 743
BssMI	GATC	2 cut(s)	481, 727
BssNI	GRCGYC	5 cut(s)	141, 185, 390, 471, 656
BssT1I	CCWWGG	2 cut(s)	465, 620
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	286, 796
BstACI	GRCGYC	5 cut(s)	141, 185, 390, 471, 656
BstC8I	GCNNGC	6 cut(s)	78, 145, 660, 715, 766, 780
BstDEI	CTNAG	3 cut(s)	22, 238, 447
BstDSI	CCRYGG	2 cut(s)	136, 306
BstF5I	GGATG	3 cut(s)	535, 685, 852
BstFNI	CGCG	8 cut(s)	121, 130, 138, 160, 219, 308, 823, 837
BstH2I	RGCGCY	3 cut(s)	144, 393, 474
BstHHI	GCGC	7 cut(s)	123, 132, 143, 167, 277, 392, 473
BstKTI	GATC	2 cut(s)	484, 730
BstMAI	GTCTC	2 cut(s)	176, 185
BstMBI	GATC	2 cut(s)	481, 727
BstMCI	CGRYCG	1 cut(s)	804
BstNI	CCWGG	1 cut(s)	612
BstNSI	RCATGY	2 cut(s)	782, 786
BstPAI	GACNNNNGTC	1 cut(s)	239
BstSCI	CCNGG	6 cut(s)	243, 248, 349, 490, 495, 610
BstSLI	GKGCMC	1 cut(s)	250
BstUI	CGCG	8 cut(s)	121, 130, 138, 160, 219, 308, 823, 837
BstV1I	GCAGC	1 cut(s)	448
BstV2I	GAAGAC	1 cut(s)	835
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	5 cut(s)	248, 296, 349, 495, 773
BtgI	CCRYGG	2 cut(s)	136, 306
BtgZI	GCGATG	2 cut(s)	175, 283
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	535, 685, 852
BtsIMutI	CAGTG	2 cut(s)	291, 477
Cac8I	GCNNGC	6 cut(s)	78, 145, 660, 715, 766, 780
CfoI	GCGC	7 cut(s)	123, 132, 143, 167, 277, 392, 473
Cfr13I	GGNCC	4 cut(s)	246, 247, 494, 772
Cfr42I	CCGCGG	2 cut(s)	139, 309
CseI	GACGC	4 cut(s)	193, 664, 829, 843
CviAII	CATG	2 cut(s)	779, 783
DdeI	CTNAG	3 cut(s)	22, 238, 447
DinI	GGCGCC	3 cut(s)	142, 391, 472
DpnI	GATC	2 cut(s)	483, 729
DpnII	GATC	2 cut(s)	481, 727
DraIII	CACNNNGTG	1 cut(s)	288
DriI	GACNNNNNGTC	1 cut(s)	340
Eam1105I	GACNNNNNGTC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	465, 620
Eco24I	GRGCYC	1 cut(s)	250
Eco81I	CCTNAGG	1 cut(s)	447
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	465, 620
EcoT22I	ATGCAT	1 cut(s)	784
EcoT38I	GRGCYC	1 cut(s)	250
EgeI	GGCGCC	3 cut(s)	142, 391, 472
EheI	GGCGCC	3 cut(s)	142, 391, 472
ErhI	CCWWGG	2 cut(s)	465, 620
Esp3I	CGTCTC	2 cut(s)	176, 185
FaeI	CATG	2 cut(s)	782, 786
FaiI	YATR	7 cut(s)	432, 440, 456, 666, 780, 784, 813
FatI	CATG	2 cut(s)	778, 782
FauI	CCCGC	1 cut(s)	152
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	8 cut(s)	5, 139, 303, 306, 355, 462, 474, 513
FokI	GGATG	2 cut(s)	522, 692
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	8 cut(s)	5, 139, 303, 306, 355, 462, 474, 513
FspBI	CTAG	1 cut(s)	621
FspI	TGCGCA	1 cut(s)	166
GlaI	GCGC	7 cut(s)	122, 131, 142, 166, 276, 391, 472
GluI	GCNGC	8 cut(s)	5, 139, 303, 306, 355, 462, 474, 513
GsaI	CCCAGC	2 cut(s)	411, 778
GsuI	CTGGAG	1 cut(s)	633
HaeII	RGCGCY	3 cut(s)	144, 393, 474
HaeIII	GGCC	5 cut(s)	248, 296, 349, 495, 773
HapII	CCGG	7 cut(s)	188, 244, 250, 350, 492, 497, 516
HgaI	GACGC	4 cut(s)	193, 664, 829, 843
HhaI	GCGC	7 cut(s)	123, 132, 143, 167, 277, 392, 473
Hin1I	GRCGYC	5 cut(s)	141, 185, 390, 471, 656
Hin1II	CATG	2 cut(s)	782, 786
Hin6I	GCGC	7 cut(s)	121, 130, 141, 165, 275, 390, 471
HinP1I	GCGC	7 cut(s)	121, 130, 141, 165, 275, 390, 471
HinfI	GANTC	2 cut(s)	221, 375
HpaII	CCGG	7 cut(s)	188, 244, 250, 350, 492, 497, 516
HphI	GGTGA	2 cut(s)	31, 802
Hpy188I	TCNGA	1 cut(s)	705
Hpy188III	TCNNGA	4 cut(s)	175, 256, 446, 751
Hpy99I	CGWCG	3 cut(s)	229, 232, 837
HpyAV	CCTTC	4 cut(s)	46, 115, 397, 745
HpyCH4III	ACNGT	2 cut(s)	286, 796
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	4 cut(s)	535, 565, 782, 850
HpyF3I	CTNAG	3 cut(s)	22, 238, 447
HpySE526I	ACGT	1 cut(s)	336
Hsp92I	GRCGYC	5 cut(s)	141, 185, 390, 471, 656
Hsp92II	CATG	2 cut(s)	782, 786
HspAI	GCGC	7 cut(s)	121, 130, 141, 165, 275, 390, 471
KasI	GGCGCC	3 cut(s)	140, 389, 470
Ksp22I	TGATCA	1 cut(s)	481
KspI	CCGCGG	2 cut(s)	139, 309
Kzo9I	GATC	2 cut(s)	481, 727
LmnI	GCTCC	5 cut(s)	160, 559, 601, 613, 614
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	5 cut(s)	152, 544, 583, 595, 837
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	336
MaeIII	GTNAC	2 cut(s)	790, 817
MalI	GATC	2 cut(s)	483, 729
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	2 cut(s)	481, 727
MboII	GAAGA	4 cut(s)	21, 271, 499, 840
MhlI	GDGCHC	2 cut(s)	250, 619
MluCI	AATT	3 cut(s)	519, 571, 722
MluI	ACGCGT	1 cut(s)	835
Mly113I	GGCGCC	3 cut(s)	141, 390, 471
MlyI	GAGTC	2 cut(s)	230, 384
Mph1103I	ATGCAT	1 cut(s)	784
MseI	TTAA	3 cut(s)	327, 414, 684
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	2 cut(s)	138, 308
MspI	CCGG	7 cut(s)	188, 244, 250, 350, 492, 497, 516
MspR9I	CCNGG	6 cut(s)	245, 250, 351, 492, 497, 612
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	8 cut(s)	121, 130, 138, 160, 219, 308, 823, 837
NarI	GGCGCC	3 cut(s)	141, 390, 471
NciI	CCSGG	5 cut(s)	245, 250, 351, 492, 497
NdeII	GATC	2 cut(s)	481, 727
NlaIII	CATG	2 cut(s)	782, 786
NlaIV	GGNNCC	5 cut(s)	142, 248, 391, 472, 501
NmeAIII	GCCGAG	1 cut(s)	749
NmuCI	GTSAC	2 cut(s)	790, 817
NsbI	TGCGCA	1 cut(s)	166
NsiI	ATGCAT	1 cut(s)	784
NspI	RCATGY	2 cut(s)	782, 786
PaeI	GCATGC	1 cut(s)	782
PcsI	WCGNNNNNNNCGW	1 cut(s)	230
PfoI	TCCNGGA	1 cut(s)	610
PkrI	GCNGC	8 cut(s)	6, 140, 304, 307, 356, 463, 475, 514
PleI	GAGTC	2 cut(s)	229, 383
PluTI	GGCGCC	3 cut(s)	144, 393, 474
PpsI	GAGTC	2 cut(s)	229, 383
PshAI	GACNNNNGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	610
PspFI	CCCAGC	2 cut(s)	407, 774
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	5 cut(s)	142, 248, 391, 472, 501
PspOMI	GGGCCC	1 cut(s)	246
PspPI	GGNCC	4 cut(s)	246, 247, 494, 772
RseI	CAYNNNNRTG	1 cut(s)	783
SacII	CCGCGG	2 cut(s)	139, 309
SaqAI	TTAA	3 cut(s)	327, 414, 684
SatI	GCNGC	8 cut(s)	5, 139, 303, 306, 355, 462, 474, 513
Sau3AI	GATC	2 cut(s)	481, 727
Sau96I	GGNCC	4 cut(s)	246, 247, 494, 772
SchI	GAGTC	2 cut(s)	230, 384
ScrFI	CCNGG	6 cut(s)	245, 250, 351, 492, 497, 612
SduI	GDGCHC	2 cut(s)	250, 619
SfaNI	GCATC	5 cut(s)	152, 544, 583, 595, 837
SfoI	GGCGCC	3 cut(s)	142, 391, 472
Sfr303I	CCGCGG	2 cut(s)	139, 309
SgrBI	CCGCGG	2 cut(s)	139, 309
SmiMI	CAYNNNNRTG	1 cut(s)	783
SphI	GCATGC	1 cut(s)	782
Sse9I	AATT	3 cut(s)	519, 571, 722
SspDI	GGCGCC	3 cut(s)	140, 389, 470
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	6 cut(s)	243, 248, 349, 490, 495, 610
StyI	CCWWGG	2 cut(s)	465, 620
TaaI	ACNGT	2 cut(s)	286, 796
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	3 cut(s)	174, 255, 344
TaqII	GACCGA	1 cut(s)	818
TasI	AATT	3 cut(s)	519, 571, 722
TauI	GCSGC	7 cut(s)	7, 141, 305, 308, 357, 476, 515
Tru1I	TTAA	3 cut(s)	327, 414, 684
Tru9I	TTAA	3 cut(s)	327, 414, 684
TscAI	CASTG	2 cut(s)	291, 484
TseFI	GTSAC	2 cut(s)	790, 817
TseI	GCWGC	1 cut(s)	461
Tsp45I	GTSAC	2 cut(s)	790, 817
TspDTI	ATGAA	1 cut(s)	683
TspGWI	ACGGA	2 cut(s)	209, 492
TspRI	CASTG	2 cut(s)	291, 484
XapI	RAATTY	1 cut(s)	722
XceI	RCATGY	2 cut(s)	782, 786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XmaJI	CCTAGG	1 cut(s)	620
XspI	CTAG	1 cut(s)	621
Zsp2I	ATGCAT	1 cut(s)	784

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.