AT4G03410

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010816
Physical Location & Seq
Forward (+)
1501168 .. 1503699
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G03410.1

Sequence Viewer

Length: 954 bp
ATGGCAGCTCTCTGTTGTTGTCCCACCACCATCATCGTCTCCGGGAAGGTTTCTTCACGGATTAAAACCGCAGGCCCATTACCCCGAATCAACCCTTTTAAGAATCAGAAACGATTGATTACAGAGAGAAGAAACTTGATCGTTAAATCGATCATTGAAGACAGAGAAGCAATCGATGTTAAAAATGACAATTTCAAGGCAGAGGAAGAACTATCAGAAGATAAAGTAGAAGATACAGATCGGCTGATGAGTCGAGGTATCAACGCAGCTATAGTTCTCGCCGCCGGTACCGTTGCGGTTACTAAGCTTTTAACCATTGATCATGACTATTGGCAAGGTTGGACTCTCTACGAGATACTTAGGTATGCACCTGAACATAATTGGTTTGCGTATGAACAAATTCTCAAAACAAACCCTGTTTTGGCGAAAATGGCGATTAGTGGAATTGTGTATTCTTTAGGAGATTGGATTGCACAATGTTACGAAGGAAAACCGCTGTTTGAGTTTGATCGAACTCGTGTTCTTAGATCAGGTCTTGTTGGATTCACACTCCATGGTTCACTGTCTCACTATTACTACCAATTCTGTGAGGCTCTCTTTCCTTTTCAAGAATGGTGGGTAGTCCCTGCAAAAGTCGCATTTGATCAAACCGTATGGTCTGCAATTTGGAACAGTATCTACTTTACAGTTTTAGGGCTCTTGCGTTTCCAATCTCCAGCTGACATTTTCAGCGAAATCAAGACAACATTTTTGCCAATGCTCACTGCAGGCTGGAAACTCTGGCCATTGGCACACTTGGTTACATACGGTGTAATCCCTGTAGACCAAAGGCTTCTTTGGGTAGATTGTATTGAACTCATATGGGTCACTATATTATCAACTTACTCGAACGAAAAAGCTGAGGCGCAAGCATCAGAGGAAACGAACTCCAGTTCTCACTCAAGCGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

317

Amino Acids

36.17

Weight (kDa)

5.49

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 232 - 293 3.1e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 287
AccB1I GGYRCC 1 cut(s) 287
AccI GTMKAC 1 cut(s) 822
AciI CCGC 4 cut(s) 69, 282, 296, 494
AcoI YGGCCR 1 cut(s) 782
AcsI RAATTY 1 cut(s) 399
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 4 cut(s) 158, 196, 608, 854
AluBI AGCT 5 cut(s) 8, 269, 307, 719, 899
AluI AGCT 5 cut(s) 8, 269, 307, 719, 899
Alw26I GTCTC 2 cut(s) 43, 570
AoxI GGCC 2 cut(s) 73, 782
ApeKI GCWGC 2 cut(s) 5, 266
ApoI RAATTY 1 cut(s) 399
ArsI GACNNNNNNTTYG 2 cut(s) 733, 765
Asp700I GAANNNNTTC 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 287
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 43
BaeI ACNNNNGTAYC 2 cut(s) 347, 380
BalI TGGCCA 1 cut(s) 784
BanI GGYRCC 1 cut(s) 287
BanII GRGCYC 1 cut(s) 699
BauI CACGAG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 900
BbvI GCAGC 2 cut(s) 17, 278
BccI CCATC 1 cut(s) 38
BclI TGATCA 2 cut(s) 319, 643
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 43, 570
BfmI CTRYAG 3 cut(s) 270, 765, 819
BisI GCNGC 3 cut(s) 6, 267, 282
BlsI GCNGC 3 cut(s) 7, 268, 283
Bme1390I CCNGG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 289
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 2 cut(s) 699, 913
Bpu10I CCTNAGC 1 cut(s) 900
BpuEI CTTGAG 1 cut(s) 925
BpuMI CCSGG 1 cut(s) 43
Bsa29I ATCGAT 2 cut(s) 149, 174
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 553
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 930
Bse8I GATNNNNATC 1 cut(s) 237
BseCI ATCGAT 2 cut(s) 149, 174
BseDI CCNNGG 1 cut(s) 553
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMII CTCAG 1 cut(s) 891
BseNI ACTGG 1 cut(s) 930
BseXI GCAGC 2 cut(s) 17, 278
BshFI GGCC 2 cut(s) 75, 784
BshNI GGYRCC 1 cut(s) 287
BshVI ATCGAT 2 cut(s) 149, 174
BsiSI CCGG 2 cut(s) 42, 285
BslFI GGGAC 2 cut(s) 6, 608
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 2 cut(s) 43, 570
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 2 cut(s) 6, 608
BsnI GGCC 2 cut(s) 75, 784
Bsp1286I GDGCHC 1 cut(s) 699
Bsp143I GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
Bsp19I CCATGG 1 cut(s) 553
BspACI CCGC 4 cut(s) 69, 282, 296, 494
BspANI GGCC 2 cut(s) 75, 784
BspCNI CTCAG 1 cut(s) 892
BspDI ATCGAT 2 cut(s) 149, 174
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 289
BspMAI CTGCAG 1 cut(s) 769
BspT107I GGYRCC 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 1 cut(s) 930
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 553
BssMI GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 1 cut(s) 553
Bst2BI CACGAG 1 cut(s) 516
Bst4CI ACNGT 6 cut(s) 292, 564, 652, 674, 688, 809
BstC8I GCNNGC 3 cut(s) 73, 769, 909
BstDEI CTNAG 4 cut(s) 303, 359, 524, 900
BstDSI CCRYGG 1 cut(s) 553
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 7 cut(s) 141, 153, 241, 322, 511, 530, 646
BstMAI GTCTC 2 cut(s) 43, 570
BstMBI GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
BstMWI GCNNNNNNNGC 2 cut(s) 431, 635
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 3 cut(s) 270, 765, 819
BstV1I GCAGC 2 cut(s) 17, 278
BstV2I GAAGAC 1 cut(s) 165
Bsu15I ATCGAT 2 cut(s) 149, 174
BsuRI GGCC 2 cut(s) 75, 784
BsuTUI ATCGAT 2 cut(s) 149, 174
BtgI CCRYGG 1 cut(s) 553
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 2 cut(s) 560, 762
Cac8I GCNNGC 3 cut(s) 73, 769, 909
CciI TCATGA 1 cut(s) 322
CfoI GCGC 1 cut(s) 907
Cfr10I RCCGGY 1 cut(s) 284
Cfr13I GGNCC 1 cut(s) 74
ClaI ATCGAT 2 cut(s) 149, 174
Csp6I GTAC 1 cut(s) 288
CspCI CAANNNNNGTGG 2 cut(s) 596, 631
CviAII CATG 2 cut(s) 323, 554
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 4 cut(s) 303, 359, 524, 900
DpnI GATC 7 cut(s) 140, 152, 240, 321, 510, 529, 645
DpnII GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
EaeI YGGCCR 1 cut(s) 782
Eco130I CCWWGG 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 699
ErhI CCWWGG 1 cut(s) 553
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 2 cut(s) 326, 557
FaqI GGGAC 2 cut(s) 6, 608
FatI CATG 2 cut(s) 322, 553
FauNDI CATATG 1 cut(s) 860
FbaI TGATCA 2 cut(s) 319, 643
FblI GTMKAC 1 cut(s) 822
Fnu4HI GCNGC 3 cut(s) 6, 267, 282
FriOI GRGCYC 1 cut(s) 699
Fsp4HI GCNGC 3 cut(s) 6, 267, 282
GlaI GCGC 1 cut(s) 906
GluI GCNGC 3 cut(s) 6, 267, 282
GsuI CTGGAG 2 cut(s) 699, 913
HaeIII GGCC 2 cut(s) 75, 784
HapII CCGG 2 cut(s) 42, 285
HhaI GCGC 1 cut(s) 907
Hin1II CATG 2 cut(s) 326, 557
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 5 cut(s) 87, 103, 250, 343, 543
HpaII CCGG 2 cut(s) 42, 285
Hpy166II GTNNAC 2 cut(s) 560, 823
Hpy188I TCNGA 3 cut(s) 108, 217, 916
Hpy188III TCNNGA 3 cut(s) 323, 608, 739
Hpy8I GTNNAC 2 cut(s) 560, 823
HpyAV CCTTC 2 cut(s) 40, 479
HpyCH4III ACNGT 6 cut(s) 292, 564, 652, 674, 688, 809
HpyCH4V TGCA 5 cut(s) 368, 473, 629, 662, 767
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 635
HpyF3I CTNAG 4 cut(s) 303, 359, 524, 900
Hsp92II CATG 2 cut(s) 326, 557
HspAI GCGC 1 cut(s) 905
KpnI GGTACC 1 cut(s) 291
Ksp22I TGATCA 2 cut(s) 319, 643
Kzo9I GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
Lsp1109I GCAGC 2 cut(s) 17, 278
LweI GCATC 1 cut(s) 920
MaeIII GTNAC 4 cut(s) 298, 479, 799, 865
MalI GATC 7 cut(s) 140, 152, 240, 321, 510, 529, 645
MboI GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
MboII GAAGA 6 cut(s) 45, 141, 170, 218, 230, 242
MhlI GDGCHC 1 cut(s) 699
MlsI TGGCCA 1 cut(s) 784
MluCI AATT 6 cut(s) 190, 379, 399, 444, 581, 663
MluNI TGGCCA 1 cut(s) 784
MlyI GAGTC 2 cut(s) 259, 337
MmeI TCCRAC 2 cut(s) 320, 520
MnlI CCTC 6 cut(s) 196, 248, 583, 895, 910, 940
Mox20I TGGCCA 1 cut(s) 784
MroXI GAANNNNTTC 1 cut(s) 399
MscI TGGCCA 1 cut(s) 784
MseI TTAA 5 cut(s) 63, 99, 144, 180, 311
Msp20I TGGCCA 1 cut(s) 784
MspA1I CMGCKG 2 cut(s) 496, 719
MspI CCGG 2 cut(s) 42, 285
MspR9I CCNGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 431, 635
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 1 cut(s) 553
NdeI CATATG 1 cut(s) 860
NdeII GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
NlaIII CATG 2 cut(s) 326, 557
NlaIV GGNNCC 1 cut(s) 289
NmuCI GTSAC 1 cut(s) 865
PagI TCATGA 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 3 cut(s) 87, 103, 543
PfoI TCCNGGA 1 cut(s) 41
PkrI GCNGC 3 cut(s) 7, 268, 283
PleI GAGTC 2 cut(s) 258, 337
PpsI GAGTC 2 cut(s) 258, 337
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 74
PsrI GAACNNNNNNTAC 2 cut(s) 662, 694
PstI CTGCAG 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 719
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SaqAI TTAA 5 cut(s) 63, 99, 144, 180, 311
SatI GCNGC 3 cut(s) 6, 267, 282
Sau3AI GATC 7 cut(s) 138, 150, 238, 319, 508, 527, 643
Sau96I GGNCC 1 cut(s) 74
SchI GAGTC 2 cut(s) 259, 337
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 1 cut(s) 699
SfaNI GCATC 1 cut(s) 920
SfcI CTRYAG 3 cut(s) 270, 765, 819
SmlI CTYRAG 1 cut(s) 940
SmoI CTYRAG 1 cut(s) 940
Sse9I AATT 6 cut(s) 190, 379, 399, 444, 581, 663
SsiI CCGC 4 cut(s) 69, 282, 296, 494
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 6 cut(s) 292, 564, 652, 674, 688, 809
TaqI TCGA 5 cut(s) 149, 174, 253, 511, 887
TasI AATT 6 cut(s) 190, 379, 399, 444, 581, 663
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 3 cut(s) 87, 103, 543
Tru1I TTAA 5 cut(s) 63, 99, 144, 180, 311
Tru9I TTAA 5 cut(s) 63, 99, 144, 180, 311
TscAI CASTG 2 cut(s) 567, 769
TseFI GTSAC 1 cut(s) 865
TseI GCWGC 2 cut(s) 5, 266
Tsp45I GTSAC 1 cut(s) 865
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 1 cut(s) 73
TspRI CASTG 2 cut(s) 567, 769
XapI RAATTY 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.