Rorug02G0496400

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010816
Physical Location & Seq
Reverse (-)
62690954 .. 62692240
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0496400.1

Sequence Viewer

Length: 1020 bp
ATGGGGGACGGCGATATGGTGCTTAAGCGAGCTCATACCGACTTCGGCGACTACGAGGAAGATGTGATTGCGGAGATCCTAGCAAGGCTACCGGTCAAATCCTTGATGCGTTTCCGGTGCGTCTGCAAGTCATGGCGTGCTTTGATCTCCGAATCCTATTTTGTAAAGAAACACTTGAACTACGGAGAGAGAGGCATCACCGAGAGCACTCCCAGATTCATTTTCATGTTGGATCCTCCCTTGTCCTTGGACTTTGAAGCCTTGATGAAGGATGATGATTGCGATGGCGCTGCTGGTGAAGTTCCCCCCGAGGCCATTATGTTATGGAACCCTGGTACAAGAGGCTCCAAGGTTTTACCAAAACCTCCTTGTGTTATGAACTCCGGGTTTAACTACTATTTTTATGGATTTGGGTATGATTCTGCTTGCACATGGAGGGTTATCAAAGACATTGATTATGTTACATTTAAAACGTGGCAGGGGTTGTTCTTAAACGGAGCTCTGCATTGGTTATATAATCTACCTGAAGGGGGCTCAAGAATTTTGGCTTTTGATTTAGAGGCAGAGAAATTTCAGAAGACGATTCCATTACCCTGTGATGACTGGTCTTATGATCCCTTGATTCATAAAAATTGTCTCTGTGTAGTTGCTTACCCTACTGGAACCGACAGTTTCAACATATGGATGATGAAAGAATATGGGGTCAAGGAATCCTGGACTGATGTTGTACAATTTTCTTTTGAGAAGTATGCAGAGGATTGTTATGAATTTAGAAGTTACTGCACTCCTGTGTGCATTTTAGAGAATGGTGTAGTTTTGAATGACAAGATGGGTGAGTATGAACACCTCTTGGTAGTATTATCTAATCTAAAGGAGAAGACATTCAAGCATGTTGTTGAGGTCGCGAACAGCATGGAGTTTAGAACAGTCATTTACCGAGAGACATTAGTTTCACCAGACATCCACACATACAAAACCAACATTGTTGCAAAGTTTGCGTTTGGGTTTGCTATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

339

Amino Acids

38.99

Weight (kDa)

5.13

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 20 - 55 5.4e-10 F-box domain
F-box-like PF12937 21 - 54 1.3e-06 F-box-like
FBA_1 PF07734 144 - 275 7e-13 F-box associated beta propeller domain
FBA_3 PF08268 144 - 299 1.3e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 905
AciI CCGC 1 cut(s) 71
AclWI GGATC 4 cut(s) 70, 227, 240, 608
AcsI RAATTY 3 cut(s) 540, 569, 767
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 2 cut(s) 337, 729
AfiI CCNNNNNNNGG 1 cut(s) 530
AflII CTTAAG 1 cut(s) 23
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 5 cut(s) 178, 257, 676, 820, 886
AjnI CCWGG 2 cut(s) 331, 713
AleI CACNNNNGTG 1 cut(s) 788
AluBI AGCT 2 cut(s) 32, 500
AluI AGCT 2 cut(s) 32, 500
Alw21I GWGCWC 3 cut(s) 34, 209, 502
Alw26I GTCTC 2 cut(s) 641, 935
AlwI GGATC 4 cut(s) 70, 227, 240, 608
Ama87I CYCGRG 1 cut(s) 308
AoxI GGCC 1 cut(s) 312
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 3 cut(s) 540, 569, 767
AsiGI ACCGGT 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 881
AspLEI GCGC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 4 cut(s) 190, 308, 845, 945
AvaI CYCGRG 1 cut(s) 308
BamHI GGATCC 1 cut(s) 232
BanII GRGCYC 3 cut(s) 34, 502, 536
BbsI GAAGAC 2 cut(s) 584, 884
Bbv12I GWGCWC 3 cut(s) 34, 209, 502
BbvI GCAGC 1 cut(s) 277
BccI CCATC 2 cut(s) 278, 823
BceAI ACGGC 1 cut(s) 25
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BciT130I CCWGG 2 cut(s) 333, 715
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 641, 935
BfaI CTAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 291
BfrI CTTAAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 3 cut(s) 333, 385, 715
BmeT110I CYCGRG 1 cut(s) 308
BmiI GGNNCC 4 cut(s) 234, 329, 346, 664
BmrFI CCNGG 3 cut(s) 333, 385, 715
BmsI GCATC 2 cut(s) 96, 204
BpiI GAAGAC 2 cut(s) 584, 884
BpuEI CTTGAG 1 cut(s) 520
BpuMI CCSGG 1 cut(s) 385
BsaJI CCNNGG 4 cut(s) 246, 309, 331, 348
BsaWI WCCGGW 2 cut(s) 91, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 2 cut(s) 608, 664
BseBI CCWGG 2 cut(s) 333, 715
BseDI CCNNGG 4 cut(s) 246, 309, 331, 348
BseGI GGATG 3 cut(s) 277, 690, 960
BseLI CCNNNNNNNGG 1 cut(s) 530
BseNI ACTGG 2 cut(s) 608, 664
BseXI GCAGC 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 766
Bsh1236I CGCG 1 cut(s) 905
BshFI GGCC 1 cut(s) 314
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 3 cut(s) 34, 209, 502
BsiHKCI CYCGRG 1 cut(s) 308
BsiSI CCGG 3 cut(s) 92, 115, 384
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 2 cut(s) 641, 935
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 308
Bsp1286I GDGCHC 4 cut(s) 34, 209, 502, 536
Bsp1407I TGTACA 1 cut(s) 727
Bsp143I GATC 4 cut(s) 75, 144, 232, 613
Bsp68I TCGCGA 1 cut(s) 905
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 314
BspFNI CGCG 1 cut(s) 905
BspLI GGNNCC 4 cut(s) 234, 329, 346, 664
BspPI GGATC 4 cut(s) 70, 227, 240, 608
BspTI CTTAAG 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 727
BsrI ACTGG 2 cut(s) 608, 664
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 4 cut(s) 246, 309, 331, 348
BssMI GATC 4 cut(s) 75, 144, 232, 613
BssT1I CCWWGG 2 cut(s) 246, 348
Bst2UI CCWGG 2 cut(s) 333, 715
Bst4CI ACNGT 2 cut(s) 671, 928
BstAFI CTTAAG 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 995
BstAUI TGTACA 1 cut(s) 727
BstC8I GCNNGC 3 cut(s) 30, 138, 427
BstF5I GGATG 3 cut(s) 277, 690, 960
BstFNI CGCG 1 cut(s) 905
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 4 cut(s) 78, 147, 235, 616
BstMAI GTCTC 2 cut(s) 641, 935
BstMBI GATC 4 cut(s) 75, 144, 232, 613
BstMWI GCNNNNNNNGC 1 cut(s) 995
BstNI CCWGG 2 cut(s) 333, 715
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 3 cut(s) 331, 383, 713
BstUI CGCG 1 cut(s) 905
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 2 cut(s) 584, 884
BstX2I RGATCY 2 cut(s) 75, 232
BstYI RGATCY 2 cut(s) 75, 232
BsuRI GGCC 1 cut(s) 314
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 3 cut(s) 277, 690, 960
BtuMI TCGCGA 1 cut(s) 905
Cac8I GCNNGC 3 cut(s) 30, 138, 427
CfoI GCGC 1 cut(s) 290
Cfr10I RCCGGY 1 cut(s) 91
CseI GACGC 1 cut(s) 109
Csp6I GTAC 2 cut(s) 336, 728
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 5 cut(s) 132, 226, 432, 890, 913
CviJI RGCY 8 cut(s) 32, 88, 260, 314, 345, 500, 534, 548
CviKI_1 RGCY 8 cut(s) 32, 88, 260, 314, 345, 500, 534, 548
CviQI GTAC 2 cut(s) 336, 728
DpnI GATC 4 cut(s) 77, 146, 234, 615
DpnII GATC 4 cut(s) 75, 144, 232, 613
DraI TTTAAA 1 cut(s) 469
Ecl136II GAGCTC 2 cut(s) 32, 500
Eco130I CCWWGG 2 cut(s) 246, 348
Eco24I GRGCYC 3 cut(s) 34, 502, 536
Eco53kI GAGCTC 2 cut(s) 32, 500
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 308
EcoICRI GAGCTC 2 cut(s) 32, 500
EcoRII CCWGG 2 cut(s) 331, 713
EcoT14I CCWWGG 2 cut(s) 246, 348
EcoT38I GRGCYC 3 cut(s) 34, 502, 536
ErhI CCWWGG 2 cut(s) 246, 348
FaeI CATG 5 cut(s) 135, 229, 435, 893, 916
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 20
FatI CATG 5 cut(s) 131, 225, 431, 889, 912
FauNDI CATATG 1 cut(s) 680
Fnu4HI GCNGC 1 cut(s) 291
FokI GGATG 3 cut(s) 284, 697, 947
FriOI GRGCYC 3 cut(s) 34, 502, 536
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 289
GluI GCNGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 1 cut(s) 314
HapII CCGG 3 cut(s) 92, 115, 384
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 290
Hin1II CATG 5 cut(s) 135, 229, 435, 893, 916
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HinfI GANTC 6 cut(s) 152, 216, 419, 583, 622, 710
HpaII CCGG 3 cut(s) 92, 115, 384
HphI GGTGA 4 cut(s) 190, 308, 845, 945
Hpy188I TCNGA 2 cut(s) 151, 576
Hpy188III TCNNGA 2 cut(s) 537, 904
HpyAV CCTTC 2 cut(s) 262, 521
HpyCH4III ACNGT 2 cut(s) 671, 928
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 7 cut(s) 126, 429, 505, 752, 783, 795, 989
HpyF10VI GCNNNNNNNGC 1 cut(s) 995
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 5 cut(s) 135, 229, 435, 893, 916
HspAI GCGC 1 cut(s) 288
Kzo9I GATC 4 cut(s) 75, 144, 232, 613
LmnI GCTCC 2 cut(s) 350, 497
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 2 cut(s) 96, 204
MaeI CTAG 1 cut(s) 80
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 2 cut(s) 460, 776
MalI GATC 4 cut(s) 77, 146, 234, 615
MboI GATC 4 cut(s) 75, 144, 232, 613
MboII GAAGA 3 cut(s) 71, 589, 889
MflI RGATCY 2 cut(s) 75, 232
MhlI GDGCHC 4 cut(s) 34, 209, 502, 536
MluCI AATT 5 cut(s) 540, 569, 631, 731, 767
MmeI TCCRAC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 881
MseI TTAA 4 cut(s) 24, 390, 468, 491
MslI CAYNNNNRTG 3 cut(s) 224, 683, 788
MspCI CTTAAG 1 cut(s) 23
MspI CCGG 3 cut(s) 92, 115, 384
MspR9I CCNGG 3 cut(s) 333, 385, 715
MvaI CCWGG 2 cut(s) 333, 715
MvnI CGCG 1 cut(s) 905
MwoI GCNNNNNNNGC 1 cut(s) 995
NciI CCSGG 1 cut(s) 385
NdeI CATATG 1 cut(s) 680
NdeII GATC 4 cut(s) 75, 144, 232, 613
NlaIII CATG 5 cut(s) 135, 229, 435, 893, 916
NlaIV GGNNCC 4 cut(s) 234, 329, 346, 664
NruI TCGCGA 1 cut(s) 905
NspI RCATGY 1 cut(s) 893
OliI CACNNNNGTG 1 cut(s) 788
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 6 cut(s) 152, 216, 419, 583, 622, 710
PfoI TCCNGGA 1 cut(s) 713
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 1 cut(s) 292
Psp124BI GAGCTC 2 cut(s) 34, 502
Psp6I CCWGG 2 cut(s) 331, 713
PspGI CCWGG 2 cut(s) 331, 713
PspN4I GGNNCC 4 cut(s) 234, 329, 346, 664
PsuI RGATCY 2 cut(s) 75, 232
RruI TCGCGA 1 cut(s) 905
RsaI GTAC 2 cut(s) 337, 729
RsaNI GTAC 2 cut(s) 336, 728
RseI CAYNNNNRTG 3 cut(s) 224, 683, 788
SacI GAGCTC 2 cut(s) 34, 502
SaqAI TTAA 4 cut(s) 24, 390, 468, 491
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 4 cut(s) 75, 144, 232, 613
ScrFI CCNGG 3 cut(s) 333, 385, 715
SduI GDGCHC 4 cut(s) 34, 209, 502, 536
SetI ASST 8 cut(s) 34, 354, 367, 476, 502, 526, 849, 903
SfaNI GCATC 2 cut(s) 96, 204
SmiMI CAYNNNNRTG 3 cut(s) 224, 683, 788
SmlI CTYRAG 2 cut(s) 23, 535
SmoI CTYRAG 2 cut(s) 23, 535
Sse9I AATT 5 cut(s) 540, 569, 631, 731, 767
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 80
SstI GAGCTC 2 cut(s) 34, 502
StyD4I CCNGG 3 cut(s) 331, 383, 713
StyI CCWWGG 2 cut(s) 246, 348
TaaI ACNGT 2 cut(s) 671, 928
TaiI ACGT 1 cut(s) 476
TasI AATT 5 cut(s) 540, 569, 631, 731, 767
TatI WGTACW 1 cut(s) 727
TfiI GAWTC 6 cut(s) 152, 216, 419, 583, 622, 710
Tru1I TTAA 4 cut(s) 24, 390, 468, 491
Tru9I TTAA 4 cut(s) 24, 390, 468, 491
TseI GCWGC 1 cut(s) 290
TspDTI ATGAA 8 cut(s) 208, 214, 281, 392, 614, 704, 780, 855
TspGWI ACGGA 2 cut(s) 198, 510
Vha464I CTTAAG 1 cut(s) 23
XapI RAATTY 3 cut(s) 540, 569, 767
XceI RCATGY 1 cut(s) 893
XmnI GAANNNNTTC 1 cut(s) 881
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.