Rorug02G0496500

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0010816
Physical Location & Seq
Forward (+)
62714165 .. 62716995
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0496500.1

Sequence Viewer

Length: 1119 bp
ATGTCCTTAACCTCTTCACTCTCCGAGTGCCGCCGCCACCTCCGCACAAAGCTCCAAAACAAACCACCTCCAGTCCCCAAAGACACCCTAGACTTCCCCCTCACAGAAAGCATCTACATACCCTCACAGGACTGGTCGCCATCCTCATTTACATCACTGGAGTCTCCGATCTCTGTTAGTGAGATATTGGATTCAGAGTTATTAGGTGAAGGGTTGATACCTTCTCTGCAACATGCGCATGACATATTGTTGGTGGAGAGTCCTGAAATGGTGTCGTATAGAGCAACCACTTACGGTCAGTTGGTTGAGAGCACATTTTTGTGGAAACTTCGTGATTTACGCAGTAATAAGGCAGAAGTGAGTGATGGGATTCATCTTGTTCTGACCGGGTTTGAGGACGTTTTGGGTGTTAAGCCACAACAATATGCATTTCATTGTGATGCTATAGCAGATGAAGTGAAACCGCTGTCGGAACCCTTCAAGATCTTTGAATTTTATTTTTCGAAACGGCCACAGAGTCGTGGAGAAACTGAGCTATCTATAAAGGCGACTAATGAGGGTCGAGTTCATGCTGTAATTTCATGGTGTTATTTCAGGTGGATACTTCAACTTGATCGAGAATGGACAATCTTTTATTCCACTGCCCCTAGGTGGATAAATTTGCCAGCCAACATTAGATCAGTCGGCAAATGTGAAAATGTGGTTCGATCTAAGCTGCTAGATTGCGGTGGGTCTAATGTTGGTCTTTATTCCCCAAATTGCACTCACCTCATTGTGGATAGGATTGCCTATGACCATCCTGTGTGTGCTGCTGCTCGAAAGGACGGCAAAACGGTTGTCACGGCTTTGTGGGTTCTTCATAGTTTTGATGTTGGACTGCCCCTTGATGCTGCTGCTATTATATACAGACCTCTCAAACATTTGAATGGTATTCTCGGTGCCAAGAATTTATTAATGTGCTTGACTGGATATCAAGGACAAGATAGAGATGACATTATGACAATGGTTGGTTTAATGGGTGCTCAGTTTTCTAAACCATTGGTGGCAAGCAAAGTCACTCATCTCATTTGCTATAAATTTGAAGCCTCGATTTCCCGGAACCCTTGTGTTGGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

372

Amino Acids

41.63

Weight (kDa)

6.6

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTCB-BRCT PF12738 317 - 361 1e-09 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 938
AciI CCGC 5 cut(s) 31, 34, 43, 464, 726
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 4 cut(s) 491, 658, 946, 1076
AfiI CCNNNNNNNGG 3 cut(s) 651, 775, 1109
AgsI TTSAA 5 cut(s) 481, 491, 608, 925, 1082
AluBI AGCT 3 cut(s) 52, 535, 715
AluI AGCT 3 cut(s) 52, 535, 715
Alw21I GWGCWC 2 cut(s) 314, 1024
Alw26I GTCTC 1 cut(s) 168
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 5 cut(s) 715, 809, 812, 890, 893
ApoI RAATTY 4 cut(s) 491, 658, 946, 1076
ArsI GACNNNNNNTTYG 2 cut(s) 822, 854
AseI ATTAAT 1 cut(s) 953
AspA2I CCTAGG 1 cut(s) 647
AspLEI GCGC 1 cut(s) 238
AsuC2I CCSGG 2 cut(s) 388, 1096
AsuHPI GGTGA 2 cut(s) 218, 758
AsuII TTCGAA 1 cut(s) 503
AvrII CCTAGG 1 cut(s) 647
BanI GGYRCC 1 cut(s) 938
BarI GAAGNNNNNNTAC 2 cut(s) 201, 233
Bbv12I GWGCWC 2 cut(s) 314, 1024
BbvI GCAGC 5 cut(s) 702, 796, 799, 877, 880
BccI CCATC 3 cut(s) 148, 359, 804
BceAI ACGGC 3 cut(s) 524, 841, 858
BciVI GTATCC 1 cut(s) 594
BcnI CCSGG 2 cut(s) 388, 1096
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 3 cut(s) 89, 648, 719
BfmI CTRYAG 1 cut(s) 444
BfuI GTATCC 1 cut(s) 594
BglII AGATCT 1 cut(s) 483
BisI GCNGC 7 cut(s) 31, 34, 716, 810, 813, 891, 894
BlnI CCTAGG 1 cut(s) 647
BlsI GCNGC 7 cut(s) 32, 35, 717, 811, 814, 892, 895
Bme1390I CCNGG 2 cut(s) 388, 1096
BmiI GGNNCC 3 cut(s) 474, 940, 1100
BmrFI CCNGG 2 cut(s) 388, 1096
BmsI GCATC 3 cut(s) 120, 430, 877
BpmI CTGGAG 2 cut(s) 54, 179
Bpu14I TTCGAA 1 cut(s) 503
BpuMI CCSGG 2 cut(s) 388, 1096
BsaJI CCNNGG 1 cut(s) 647
Bsc4I CCNNNNNNNGG 3 cut(s) 651, 775, 1109
Bse1I ACTGG 4 cut(s) 71, 137, 162, 970
BseDI CCNNGG 1 cut(s) 647
BseGI GGATG 2 cut(s) 140, 796
BseLI CCNNNNNNNGG 3 cut(s) 651, 775, 1109
BseMII CTCAG 2 cut(s) 522, 1037
BseNI ACTGG 4 cut(s) 71, 137, 162, 970
BseXI GCAGC 5 cut(s) 702, 796, 799, 877, 880
BshFI GGCC 1 cut(s) 511
BshNI GGYRCC 1 cut(s) 938
BsiHKAI GWGCWC 2 cut(s) 314, 1024
BsiSI CCGG 2 cut(s) 387, 1096
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 3 cut(s) 651, 775, 1109
BsmAI GTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 503
Bsp1286I GDGCHC 2 cut(s) 314, 1024
Bsp143I GATC 5 cut(s) 168, 483, 613, 677, 707
BspACI CCGC 5 cut(s) 31, 34, 43, 464, 726
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 2 cut(s) 523, 1036
BspLI GGNNCC 3 cut(s) 474, 940, 1100
BspT104I TTCGAA 1 cut(s) 503
BspT107I GGYRCC 1 cut(s) 938
BsrI ACTGG 4 cut(s) 71, 137, 162, 970
BssECI CCNNGG 1 cut(s) 647
BssMI GATC 5 cut(s) 168, 483, 613, 677, 707
BssT1I CCWWGG 1 cut(s) 647
Bst4CI ACNGT 2 cut(s) 296, 835
Bst6I CTCTTC 1 cut(s) 19
BstBI TTCGAA 1 cut(s) 503
BstC8I GCNNGC 2 cut(s) 666, 1048
BstDEI CTNAG 3 cut(s) 531, 711, 1023
BstF5I GGATG 2 cut(s) 140, 796
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 5 cut(s) 171, 486, 616, 680, 710
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 5 cut(s) 168, 483, 613, 677, 707
BstMWI GCNNNNNNNGC 2 cut(s) 42, 235
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 386, 1094
BstSFI CTRYAG 1 cut(s) 444
BstV1I GCAGC 5 cut(s) 702, 796, 799, 877, 880
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 1 cut(s) 511
BtsCI GGATG 2 cut(s) 140, 796
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 155, 639
Cac8I GCNNGC 2 cut(s) 666, 1048
CfoI GCGC 1 cut(s) 238
CviAII CATG 4 cut(s) 233, 239, 569, 582
CviJI RGCY 8 cut(s) 52, 415, 511, 535, 668, 715, 845, 1085
CviKI_1 RGCY 8 cut(s) 52, 415, 511, 535, 668, 715, 845, 1085
DdeI CTNAG 3 cut(s) 531, 711, 1023
DpnI GATC 5 cut(s) 170, 485, 615, 679, 709
DpnII GATC 5 cut(s) 168, 483, 613, 677, 707
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 647
Eco32I GATATC 1 cut(s) 971
EcoRV GATATC 1 cut(s) 971
EcoT14I CCWWGG 1 cut(s) 647
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 647
FaeI CATG 4 cut(s) 236, 242, 572, 585
FaqI GGGAC 1 cut(s) 59
FatI CATG 4 cut(s) 232, 238, 568, 581
Fnu4HI GCNGC 7 cut(s) 31, 34, 716, 810, 813, 891, 894
FokI GGATG 2 cut(s) 127, 783
Fsp4HI GCNGC 7 cut(s) 31, 34, 716, 810, 813, 891, 894
FspAI RTGCGCAY 1 cut(s) 237
FspBI CTAG 3 cut(s) 89, 648, 719
FspI TGCGCA 1 cut(s) 237
GlaI GCGC 1 cut(s) 237
GluI GCNGC 7 cut(s) 31, 34, 716, 810, 813, 891, 894
GsuI CTGGAG 2 cut(s) 54, 179
HaeIII GGCC 1 cut(s) 511
HapII CCGG 2 cut(s) 387, 1096
HhaI GCGC 1 cut(s) 238
Hin1II CATG 4 cut(s) 236, 242, 572, 585
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HinfI GANTC 5 cut(s) 161, 191, 259, 370, 517
HpaII CCGG 2 cut(s) 387, 1096
HphI GGTGA 2 cut(s) 218, 758
Hpy188I TCNGA 5 cut(s) 25, 168, 196, 384, 472
Hpy188III TCNNGA 4 cut(s) 263, 332, 481, 617
HpyAV CCTTC 3 cut(s) 203, 231, 487
HpyCH4III ACNGT 2 cut(s) 296, 835
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 229, 428, 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 42, 235
HpyF3I CTNAG 3 cut(s) 531, 711, 1023
HpySE526I ACGT 1 cut(s) 399
Hsp92II CATG 4 cut(s) 236, 242, 572, 585
HspAI GCGC 1 cut(s) 236
Kzo9I GATC 5 cut(s) 168, 483, 613, 677, 707
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 5 cut(s) 702, 796, 799, 877, 880
LweI GCATC 3 cut(s) 120, 430, 877
MaeI CTAG 3 cut(s) 89, 648, 719
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 838, 1054
MalI GATC 5 cut(s) 170, 485, 615, 679, 709
MboI GATC 5 cut(s) 168, 483, 613, 677, 707
MboII GAAGA 2 cut(s) 6, 848
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 314, 1024
MluCI AATT 6 cut(s) 491, 576, 658, 757, 946, 1076
MlyI GAGTC 3 cut(s) 170, 268, 526
MmeI TCCRAC 3 cut(s) 450, 853, 1090
Mph1103I ATGCAT 1 cut(s) 430
MseI TTAA 4 cut(s) 8, 411, 953, 1013
MslI CAYNNNNRTG 4 cut(s) 237, 319, 438, 924
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 2 cut(s) 387, 1096
MspR9I CCNGG 2 cut(s) 388, 1096
MwoI GCNNNNNNNGC 2 cut(s) 42, 235
NciI CCSGG 2 cut(s) 388, 1096
NdeII GATC 5 cut(s) 168, 483, 613, 677, 707
NlaIII CATG 4 cut(s) 236, 242, 572, 585
NlaIV GGNNCC 3 cut(s) 474, 940, 1100
NmuCI GTSAC 2 cut(s) 838, 1054
NsbI TGCGCA 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 1 cut(s) 236
NspV TTCGAA 1 cut(s) 503
PfeI GAWTC 2 cut(s) 191, 370
PfoI TCCNGGA 1 cut(s) 1094
PkrI GCNGC 7 cut(s) 32, 35, 717, 811, 814, 892, 895
PleI GAGTC 3 cut(s) 169, 267, 525
PpsI GAGTC 3 cut(s) 169, 267, 525
PshBI ATTAAT 1 cut(s) 953
PspN4I GGNNCC 3 cut(s) 474, 940, 1100
PsuI RGATCY 1 cut(s) 483
RseI CAYNNNNRTG 4 cut(s) 237, 319, 438, 924
SaqAI TTAA 4 cut(s) 8, 411, 953, 1013
SatI GCNGC 7 cut(s) 31, 34, 716, 810, 813, 891, 894
Sau3AI GATC 5 cut(s) 168, 483, 613, 677, 707
SchI GAGTC 3 cut(s) 170, 268, 526
ScrFI CCNGG 2 cut(s) 388, 1096
SduI GDGCHC 2 cut(s) 314, 1024
SfaNI GCATC 3 cut(s) 120, 430, 877
SfcI CTRYAG 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 503
SmiMI CAYNNNNRTG 4 cut(s) 237, 319, 438, 924
Sse9I AATT 6 cut(s) 491, 576, 658, 757, 946, 1076
SsiI CCGC 5 cut(s) 31, 34, 43, 464, 726
SspMI CTAG 3 cut(s) 89, 648, 719
StyD4I CCNGG 2 cut(s) 386, 1094
StyI CCWWGG 1 cut(s) 647
TaaI ACNGT 2 cut(s) 296, 835
TaiI ACGT 1 cut(s) 402
TaqI TCGA 6 cut(s) 503, 562, 616, 706, 817, 1088
TasI AATT 6 cut(s) 491, 576, 658, 757, 946, 1076
TauI GCSGC 2 cut(s) 33, 36
TfiI GAWTC 2 cut(s) 191, 370
Tru1I TTAA 4 cut(s) 8, 411, 953, 1013
Tru9I TTAA 4 cut(s) 8, 411, 953, 1013
TscAI CASTG 2 cut(s) 162, 646
TseFI GTSAC 2 cut(s) 838, 1054
TseI GCWGC 5 cut(s) 715, 809, 812, 890, 893
Tsp45I GTSAC 2 cut(s) 838, 1054
TspDTI ATGAA 6 cut(s) 362, 422, 468, 557, 570, 848
TspRI CASTG 2 cut(s) 162, 646
VspI ATTAAT 1 cut(s) 953
XapI RAATTY 4 cut(s) 491, 658, 946, 1076
XceI RCATGY 1 cut(s) 236
XmaJI CCTAGG 1 cut(s) 647
XspI CTAG 3 cut(s) 89, 648, 719
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.