Rroxscaffold_2G00088020

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0010816
Physical Location & Seq
Reverse (-)
10078059 .. 10080882
2824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088020.1

Sequence Viewer

Length: 1074 bp
ATGGCTACACTTAACATAAACGCAGCTCATAAGCTCACAACCTCCTCCTTAAATCCTCAACCCCACAAACCCAGTTCTCTTCCTTTCTTCTTGTGTGCCCAGAGCTTCAGCAGACCCGGCCCATCGAAGAAATGGGTCATCTCGTCCCGGAAAAAACGAAGCTTTACTGTTGGGTCAGTGACGGAGGACAGAGAGGTGGTTGCTGACCAAGAGAGCCGGTTGTTGGTTGATGGGTCTGAAGAGTTTGTGGGTCTTCAATCTGAATCGTCTGGTTCTGGAGGAAATGGAGATGTGGAGGATTTGGATAAGTTGACCAGTAGAGCTGTCAATGCTTTGATTGTTCTCGGATTTGGGACCTTTGCGGTGTCTAAGTTGCTAACGATTGACCATGACTATTGGCATGGATGGACCCTTTACGAGATAGTGAAGTATGTACCTGAGCACAATTGGATTGCCTACGAACAAGCTCTCCAAGCAAACCCTGTTTTTGCCAAAATGGTGATAAGTGGGGTAGTCTATACTCTAGGAGATTGGATTGCCCAATGTTATGAAGGGAAGCCGCTTTTGGAATTTGATAGAACACGCATGTTCAGATCAGGGCTTGTAGGGTTTTCCCTCCATGGATCCCTTTCTCATTATTATTACCAATTTTGTGAGGCTCTCTTTCCTTTGGAAGATTGGTGGGTAGTCCCGGCCAAAATAACCTTTGACCAAACAGTGTGGGCGGCTATATGGAACAGCATCTATTTTGTTGCTTTGGGGGTCTTGCGTTTTGAGTCCCCAACCAAGATTTTTGATGAACTGAAGGCTACATTTCGACCCATGCTGACCGCAGGATGGAAACTTTGGCCATTTGCTCATCTAGTTACCTATGGCCTGATTCCTCTTGAACAAAGGCTTCTTTGGGTGGACTGTGTGGAGCTTATTTGGGTTACTATTCTTTCAACATATTCAAATGAGAAGTCAGAGTCCACTATATTGGAGGTATCGTCTGGAGCAGATTCCTCTTCTTCGTCAAGCAGTTCTCCTAAGGTATGTCGCATTAGTGTTGTTAATGTAGGATCTCTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

357

Amino Acids

39.92

Weight (kDa)

5.79

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 254 - 315 4.4e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 362, 560, 725, 831
AclWI GGATC 3 cut(s) 618, 631, 1069
AcoI YGGCCR 2 cut(s) 693, 848
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 3 cut(s) 91, 258, 824
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 223, 837
AgsI TTSAA 4 cut(s) 257, 890, 945, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AloI GAACNNNNNNTCC 2 cut(s) 453, 485
AluBI AGCT 7 cut(s) 26, 34, 105, 162, 323, 467, 922
AluI AGCT 7 cut(s) 26, 34, 105, 162, 323, 467, 922
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 3 cut(s) 618, 631, 1069
AoxI GGCC 4 cut(s) 118, 693, 848, 874
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 569
ArsI GACNNNNNNTTYG 2 cut(s) 947, 979
AspS9I GGNCC 3 cut(s) 119, 354, 408
AsuC2I CCSGG 3 cut(s) 117, 148, 692
AsuHPI GGTGA 1 cut(s) 511
AvaII GGWCC 2 cut(s) 354, 408
AxyI CCTNAGG 1 cut(s) 1029
BaeGI GKGCMC 1 cut(s) 100
BalI TGGCCA 1 cut(s) 850
BamHI GGATCC 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 35
BccI CCATC 4 cut(s) 130, 224, 399, 831
BcnI CCSGG 3 cut(s) 117, 148, 692
BfaI CTAG 3 cut(s) 524, 863, 1072
BisI GCNGC 3 cut(s) 24, 560, 726
BlsI GCNGC 3 cut(s) 25, 561, 727
Bme1390I CCNGG 3 cut(s) 117, 148, 692
Bme18I GGWCC 2 cut(s) 354, 408
BmgT120I GGNCC 3 cut(s) 119, 354, 408
BmiI GGNNCC 3 cut(s) 355, 410, 625
BmrFI CCNGG 3 cut(s) 117, 148, 692
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 750
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 245
BpmI CTGGAG 2 cut(s) 297, 1014
Bpu10I CCTNAGC 1 cut(s) 438
BpuMI CCSGG 3 cut(s) 117, 148, 692
BsaJI CCNNGG 1 cut(s) 619
BsaXI ACNNNNNCTCC 4 cut(s) 453, 483, 974, 1004
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 837
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 72, 315
Bse21I CCTNAGG 1 cut(s) 1029
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 2 cut(s) 410, 842
BseLI CCNNNNNNNGG 2 cut(s) 223, 837
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 2 cut(s) 72, 315
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 4 cut(s) 120, 695, 850, 876
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 4 cut(s) 117, 148, 217, 692
BslFI GGGAC 4 cut(s) 130, 367, 674, 763
BslI CCNNNNNNNGG 2 cut(s) 223, 837
BsmFI GGGAC 4 cut(s) 130, 367, 674, 763
BsnI GGCC 4 cut(s) 120, 695, 850, 876
Bsp1286I GDGCHC 2 cut(s) 100, 444
Bsp143I GATC 3 cut(s) 593, 623, 1061
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 4 cut(s) 362, 560, 725, 831
BspANI GGCC 4 cut(s) 120, 695, 850, 876
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 3 cut(s) 355, 410, 625
BspPI GGATC 3 cut(s) 618, 631, 1069
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 2 cut(s) 72, 315
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 3 cut(s) 593, 623, 1061
BssT1I CCWWGG 1 cut(s) 619
Bst4CI ACNGT 3 cut(s) 169, 718, 914
Bst6I CTCTTC 3 cut(s) 84, 234, 1012
BstDEI CTNAG 3 cut(s) 369, 438, 1029
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 2 cut(s) 410, 842
BstKTI GATC 3 cut(s) 596, 626, 1064
BstMBI GATC 3 cut(s) 593, 623, 1061
BstMWI GCNNNNNNNGC 3 cut(s) 117, 329, 473
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 115, 146, 690
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 623, 1061
BstXI CCANNNNNNTGG 1 cut(s) 979
BstYI RGATCY 2 cut(s) 623, 1061
Bsu36I CCTNAGG 1 cut(s) 1029
BsuRI GGCC 4 cut(s) 120, 695, 850, 876
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 2 cut(s) 410, 842
BtsIMutI CAGTG 2 cut(s) 183, 723
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 3 cut(s) 119, 354, 408
Csp6I GTAC 1 cut(s) 434
CspCI CAANNNNNGTGG 2 cut(s) 701, 736
CviAII CATG 5 cut(s) 389, 401, 586, 620, 823
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 3 cut(s) 369, 438, 1029
DpnI GATC 3 cut(s) 595, 625, 1063
DpnII GATC 3 cut(s) 593, 623, 1061
EaeI YGGCCR 2 cut(s) 693, 848
Eam1104I CTCTTC 3 cut(s) 84, 234, 1012
EarI CTCTTC 3 cut(s) 84, 234, 1012
Eco130I CCWWGG 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 354, 408
Eco57I CTGAAG 3 cut(s) 91, 258, 824
Eco81I CCTNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 619
FaeI CATG 5 cut(s) 392, 404, 589, 623, 826
FaqI GGGAC 4 cut(s) 130, 367, 674, 763
FatI CATG 5 cut(s) 388, 400, 585, 619, 822
Fnu4HI GCNGC 3 cut(s) 24, 560, 726
FokI GGATG 2 cut(s) 417, 849
Fsp4HI GCNGC 3 cut(s) 24, 560, 726
FspBI CTAG 3 cut(s) 524, 863, 1072
GluI GCNGC 3 cut(s) 24, 560, 726
GsuI CTGGAG 2 cut(s) 297, 1014
HaeIII GGCC 4 cut(s) 120, 695, 850, 876
HapII CCGG 4 cut(s) 117, 148, 217, 692
Hin1II CATG 5 cut(s) 392, 404, 589, 623, 826
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 5 cut(s) 263, 776, 880, 968, 1001
HpaII CCGG 4 cut(s) 117, 148, 217, 692
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 3 cut(s) 312, 910, 972
Hpy188I TCNGA 5 cut(s) 238, 262, 347, 593, 967
Hpy188III TCNNGA 3 cut(s) 276, 887, 993
Hpy8I GTNNAC 3 cut(s) 312, 910, 972
HpyAV CCTTC 2 cut(s) 545, 799
HpyCH4III ACNGT 3 cut(s) 169, 718, 914
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 329, 473
HpyF3I CTNAG 3 cut(s) 369, 438, 1029
Hsp92II CATG 5 cut(s) 392, 404, 589, 623, 826
Kzo9I GATC 3 cut(s) 593, 623, 1061
LmnI GCTCC 2 cut(s) 919, 995
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 750
MaeI CTAG 3 cut(s) 524, 863, 1072
MaeIII GTNAC 3 cut(s) 178, 865, 931
MalI GATC 3 cut(s) 595, 625, 1063
MboI GATC 3 cut(s) 593, 623, 1061
MboII GAAGA 8 cut(s) 71, 79, 139, 245, 251, 686, 999, 1002
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 2 cut(s) 623, 1061
MhlI GDGCHC 2 cut(s) 100, 444
MlsI TGGCCA 1 cut(s) 850
MluCI AATT 3 cut(s) 445, 569, 647
MluNI TGGCCA 1 cut(s) 850
MlyI GAGTC 2 cut(s) 785, 977
Mox20I TGGCCA 1 cut(s) 850
MscI TGGCCA 1 cut(s) 850
MseI TTAA 3 cut(s) 12, 50, 1053
Msp20I TGGCCA 1 cut(s) 850
MspI CCGG 4 cut(s) 117, 148, 217, 692
MspR9I CCNGG 3 cut(s) 117, 148, 692
MunI CAATTG 1 cut(s) 445
MwoI GCNNNNNNNGC 3 cut(s) 117, 329, 473
NciI CCSGG 3 cut(s) 117, 148, 692
NcoI CCATGG 1 cut(s) 619
NdeII GATC 3 cut(s) 593, 623, 1061
NlaIII CATG 5 cut(s) 392, 404, 589, 623, 826
NlaIV GGNNCC 3 cut(s) 355, 410, 625
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 589
PfeI GAWTC 3 cut(s) 263, 880, 1001
PfoI TCCNGGA 1 cut(s) 146
PkrI GCNGC 3 cut(s) 25, 561, 727
PleI GAGTC 2 cut(s) 784, 976
PpsI GAGTC 2 cut(s) 784, 976
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
PspN4I GGNNCC 3 cut(s) 355, 410, 625
PspPI GGNCC 3 cut(s) 119, 354, 408
PspPPI RGGWCCY 1 cut(s) 354
PsuI RGATCY 2 cut(s) 623, 1061
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SaqAI TTAA 3 cut(s) 12, 50, 1053
SatI GCNGC 3 cut(s) 24, 560, 726
Sau3AI GATC 3 cut(s) 593, 623, 1061
Sau96I GGNCC 3 cut(s) 119, 354, 408
SchI GAGTC 2 cut(s) 785, 977
ScrFI CCNGG 3 cut(s) 117, 148, 692
SduI GDGCHC 2 cut(s) 100, 444
SfaNI GCATC 1 cut(s) 750
SinI GGWCC 2 cut(s) 354, 408
Sse9I AATT 3 cut(s) 445, 569, 647
SsiI CCGC 4 cut(s) 362, 560, 725, 831
SspMI CTAG 3 cut(s) 524, 863, 1072
StyD4I CCNGG 3 cut(s) 115, 146, 690
StyI CCWWGG 1 cut(s) 619
TaaI ACNGT 3 cut(s) 169, 718, 914
TaqI TCGA 2 cut(s) 125, 817
TasI AATT 3 cut(s) 445, 569, 647
TauI GCSGC 2 cut(s) 562, 728
TfiI GAWTC 3 cut(s) 263, 880, 1001
Tru1I TTAA 3 cut(s) 12, 50, 1053
Tru9I TTAA 3 cut(s) 12, 50, 1053
TscAI CASTG 2 cut(s) 183, 723
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 564, 813
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 183, 723
VpaK11BI GGWCC 2 cut(s) 354, 408
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XspI CTAG 3 cut(s) 524, 863, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.