MD17G1080100.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0010816
Physical Location & Seq
Reverse (-)
6615251 .. 6618480
3230 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1080100.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGGCTACCCTTAACACGATCGCAGCTCACAACCTCCCTTCACCCTCAACCTCCTCCTTCGCCACCCAATCTCACAAACCCAACTCGCTTTCACTCTTCTTCTGCACCCAAACCTCCAGCAAACCCCACCCACCACGGCTTCCGGCCTTCCCGACCAGGAAAAAACGAAGCTGGATTGTTAGATCGATCACGGAGGACAGAGAGGTGGTTCCCTTGAAGAAGAAGGATACAGGGGAACAAGATAGCAGCTTGCTGCTTAATGGGTCGGGAGAATTTCAGGCTCTTTCGACATCATCGGAGGAGAAAGGAGAGGGGGATGATTTGGATAAGCTGACGAGCAGAGCTATTAATGCGTTAATTGTTCTGGGATTTGGGACCCTTGCGGTCTCTAAGTTGCTCACAATCGACCACGATTATTGGCATGGATGGACACTTTATGAGATACTAAGATATGTACCGGAACACAATTGGATTGCATATGAACAGGCTCTCAAAGCAAATCCTGTTTTTGCCAAAATGGTGATAAGTGGGGTTGTCTATACTCTAGGAGATTGGATTGCTCAATGTTTTGAAGGGAAGCCGCTTTTGGAGTTTGACCGGAAACGTATGTTCAGATCAGGCCTTGTTGGCTTTACTTTCCATGGATCTCTTTCCCATTATTATTACCAATTTTGTGAGGCTCTTTTTCCTTTGGAGGATTGGTGGGTGGTCCCTGCCAAAATAGCCTTTGATCAAACAGTGTGGTCAGCGATTTGGAACAGCATCTATTTTGTGGTTTTGGGGTTCTTGCGTTTCGAATCCCCAACCAAGATTTTTGATGAACTTAGGGCTACATTTGTGCCCATGCTGACTGCGGGATGGAAGCTTTGGCCATTCGCTCATGTCATTACCTATGGCCTGATCCCTGTTGAACAAAGGCTTCTTTGGGTGGACTGTGTGGAGCTAATTTGGGTTACTATTCTCTCAACTTATTCAAATGAGAAGGCAGATTCTAGTTTATCTGAGGCATCTTCTGGAGCAGATTCTGCTTCTTCGTCAAGCAGTTCTTCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

353

Amino Acids

39.65

Weight (kDa)

6.01

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 261 - 322 8.3e-18 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 383, 581, 854
AclWI GGATC 2 cut(s) 652, 895
AcoI YGGCCR 1 cut(s) 869
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 456
AgsI TTSAA 5 cut(s) 217, 572, 911, 975, 1050
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 7 cut(s) 26, 171, 249, 331, 344, 865, 943
AluI AGCT 7 cut(s) 26, 171, 249, 331, 344, 865, 943
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 2 cut(s) 652, 895
AlwNI CAGNNNCTG 1 cut(s) 1025
AoxI GGCC 4 cut(s) 144, 619, 869, 895
ApeKI GCWGC 3 cut(s) 23, 246, 253
ApoI RAATTY 1 cut(s) 272
AseI ATTAAT 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 375, 709
AsuHPI GGTGA 2 cut(s) 33, 532
AsuII TTCGAA 1 cut(s) 795
AvaII GGWCC 2 cut(s) 375, 709
BaeGI GKGCMC 1 cut(s) 843
BalI TGGCCA 1 cut(s) 871
BbvI GCAGC 3 cut(s) 35, 240, 258
BccI CCATC 2 cut(s) 420, 852
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 157
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 730
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 2 cut(s) 545, 993
BfuI GTATCC 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 627
BisI GCNGC 4 cut(s) 24, 247, 254, 581
BlsI GCNGC 4 cut(s) 25, 248, 255, 582
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 2 cut(s) 375, 709
BmgT120I GGNCC 2 cut(s) 375, 709
BmiI GGNNCC 4 cut(s) 210, 376, 377, 711
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 771, 1016
BpmI CTGGAG 2 cut(s) 100, 1035
Bpu14I TTCGAA 1 cut(s) 795
Bsa29I ATCGAT 1 cut(s) 185
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 2 cut(s) 134, 640
BsaWI WCCGGW 2 cut(s) 457, 597
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
BseBI CCWGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 134, 640
BseGI GGATG 3 cut(s) 322, 431, 863
BseMII CTCAG 1 cut(s) 993
BseRI GAGGAG 2 cut(s) 43, 314
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 3 cut(s) 35, 240, 258
BsgI GTGCAG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 21
BshFI GGCC 4 cut(s) 146, 621, 871, 897
BshVI ATCGAT 1 cut(s) 185
BsiEI CGRYCG 1 cut(s) 21
BsiSI CCGG 3 cut(s) 143, 458, 598
BslFI GGGAC 2 cut(s) 388, 695
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 2 cut(s) 388, 695
BsnI GGCC 4 cut(s) 146, 621, 871, 897
Bso31I GGTCTC 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 843
Bsp143I GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 3 cut(s) 383, 581, 854
BspANI GGCC 4 cut(s) 146, 621, 871, 897
BspCNI CTCAG 1 cut(s) 994
BspDI ATCGAT 1 cut(s) 185
BspLI GGNNCC 4 cut(s) 210, 376, 377, 711
BspPI GGATC 2 cut(s) 652, 895
BspT104I TTCGAA 1 cut(s) 795
BspTNI GGTCTC 1 cut(s) 391
BssECI CCNNGG 2 cut(s) 134, 640
BssMI GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 739, 935
Bst6I CTCTTC 1 cut(s) 101
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstBI TTCGAA 1 cut(s) 795
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 4 cut(s) 390, 446, 824, 1002
BstDSI CCRYGG 2 cut(s) 134, 640
BstF5I GGATG 3 cut(s) 322, 431, 863
BstKTI GATC 7 cut(s) 21, 185, 189, 617, 647, 733, 903
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
BstMCI CGRYCG 1 cut(s) 21
BstMWI GCNNNNNNNGC 5 cut(s) 350, 494, 627, 722, 1025
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstSLI GKGCMC 1 cut(s) 843
BstV1I GCAGC 3 cut(s) 35, 240, 258
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
Bsu15I ATCGAT 1 cut(s) 185
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 4 cut(s) 146, 621, 871, 897
BsuTUI ATCGAT 1 cut(s) 185
BtgI CCRYGG 2 cut(s) 134, 640
BtsCI GGATG 3 cut(s) 322, 431, 863
BtsIMutI CAGTG 1 cut(s) 744
Cac8I GCNNGC 1 cut(s) 251
CaiI CAGNNNCTG 1 cut(s) 1025
Cfr13I GGNCC 2 cut(s) 375, 709
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 4 cut(s) 398, 433, 722, 757
CviAII CATG 4 cut(s) 422, 641, 844, 881
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 4 cut(s) 390, 446, 824, 1002
DpnI GATC 7 cut(s) 20, 184, 188, 616, 646, 732, 902
DpnII GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
EaeI YGGCCR 1 cut(s) 869
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 640
Eco147I AGGCCT 1 cut(s) 621
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 375, 709
EcoO109I RGGNCCY 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 640
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 4 cut(s) 425, 644, 847, 884
FalI AAGNNNNNCTT 1 cut(s) 1030
FaqI GGGAC 2 cut(s) 388, 695
FatI CATG 4 cut(s) 421, 640, 843, 880
FauI CCCGC 1 cut(s) 847
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 4 cut(s) 24, 247, 254, 581
FokI GGATG 3 cut(s) 329, 438, 870
Fsp4HI GCNGC 4 cut(s) 24, 247, 254, 581
FspBI CTAG 2 cut(s) 545, 993
GluI GCNGC 4 cut(s) 24, 247, 254, 581
GsuI CTGGAG 2 cut(s) 100, 1035
HaeIII GGCC 4 cut(s) 146, 621, 871, 897
HapII CCGG 3 cut(s) 143, 458, 598
Hin1II CATG 4 cut(s) 425, 644, 847, 884
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 3 cut(s) 797, 989, 1022
HpaII CCGG 3 cut(s) 143, 458, 598
HphI GGTGA 2 cut(s) 33, 532
Hpy166II GTNNAC 1 cut(s) 931
Hpy188I TCNGA 3 cut(s) 298, 614, 1003
Hpy188III TCNNGA 3 cut(s) 151, 267, 1014
Hpy8I GTNNAC 1 cut(s) 931
HpyAV CCTTC 6 cut(s) 48, 67, 157, 217, 566, 976
HpyCH4III ACNGT 2 cut(s) 739, 935
HpyCH4IV ACGT 1 cut(s) 604
HpyCH4V TGCA 2 cut(s) 105, 476
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 494, 627, 722, 1025
HpyF3I CTNAG 4 cut(s) 390, 446, 824, 1002
HpySE526I ACGT 1 cut(s) 604
Hsp92II CATG 4 cut(s) 425, 644, 847, 884
KflI GGGWCCC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
LmnI GCTCC 2 cut(s) 940, 1016
Lsp1109I GCAGC 3 cut(s) 35, 240, 258
LweI GCATC 2 cut(s) 771, 1016
MaeI CTAG 2 cut(s) 545, 993
MaeII ACGT 1 cut(s) 604
MaeIII GTNAC 1 cut(s) 952
MalI GATC 7 cut(s) 20, 184, 188, 616, 646, 732, 902
MboI GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
MboII GAAGA 7 cut(s) 88, 91, 229, 232, 1002, 1023, 1038
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 1 cut(s) 644
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 1 cut(s) 871
MluCI AATT 5 cut(s) 272, 357, 466, 668, 945
MluNI TGGCCA 1 cut(s) 871
Mox20I TGGCCA 1 cut(s) 871
MscI TGGCCA 1 cut(s) 871
MseI TTAA 4 cut(s) 12, 258, 348, 356
Msp20I TGGCCA 1 cut(s) 871
MspI CCGG 3 cut(s) 143, 458, 598
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 466
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 5 cut(s) 350, 494, 627, 722, 1025
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 478
NdeII GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
NlaIII CATG 4 cut(s) 425, 644, 847, 884
NlaIV GGNNCC 4 cut(s) 210, 376, 377, 711
NspV TTCGAA 1 cut(s) 795
PceI AGGCCT 1 cut(s) 621
PfeI GAWTC 3 cut(s) 797, 989, 1022
PkrI GCNGC 4 cut(s) 25, 248, 255, 582
Ple19I CGATCG 1 cut(s) 21
PpuMI RGGWCCY 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 375
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 4 cut(s) 210, 376, 377, 711
PspPI GGNCC 2 cut(s) 375, 709
PspPPI RGGWCCY 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 644
PvuI CGATCG 1 cut(s) 21
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 4 cut(s) 12, 258, 348, 356
SatI GCNGC 4 cut(s) 24, 247, 254, 581
Sau3AI GATC 7 cut(s) 18, 182, 186, 614, 644, 730, 900
Sau96I GGNCC 2 cut(s) 375, 709
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 2 cut(s) 771, 1016
SfuI TTCGAA 1 cut(s) 795
SinI GGWCC 2 cut(s) 375, 709
Sse9I AATT 5 cut(s) 272, 357, 466, 668, 945
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 3 cut(s) 383, 581, 854
SspMI CTAG 2 cut(s) 545, 993
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 2 cut(s) 739, 935
TaiI ACGT 1 cut(s) 607
TaqI TCGA 4 cut(s) 185, 287, 405, 795
TasI AATT 5 cut(s) 272, 357, 466, 668, 945
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 3 cut(s) 797, 989, 1022
Tru1I TTAA 4 cut(s) 12, 258, 348, 356
Tru9I TTAA 4 cut(s) 12, 258, 348, 356
TscAI CASTG 1 cut(s) 744
TseI GCWGC 3 cut(s) 23, 246, 253
TspDTI ATGAA 2 cut(s) 495, 834
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 1 cut(s) 744
VpaK11BI GGWCC 2 cut(s) 375, 709
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 272
XspI CTAG 2 cut(s) 545, 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.