Rmu_ssc0000346.1_g000001

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000346.1
OG0010816
Physical Location & Seq
Reverse (-)
595 .. 4175
3581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000346.1_g000001.1.cds

Sequence Viewer

Length: 1179 bp
atgaacgttattgatattgagagcgattgttcccttgttgtcactactctacagcgtgaggtggaagatagatctgacattgggcgtattatcgatgattgtaagtcatatttaacatcttttcactcaattcaggttagtcacatattccgtgaagcaaatggtgtggccaacagctccatcccaaacactctgttagcgtctctaatggctacacttaacataaacgcagctcataagctcacaacctcctccttaaatcctcaaccccacaaacccagttctcttcctttcttcttgtgtgcccagaacttcagcagacccggcccatcgaagaaatgggtcatctcggccaggaaaaaacgaagctttactgttgggtcagtgacggaggacagagaggtggttgctgatcaagagagccggttgttggttgatgggtctgaagagtttgtgggtcttcaatctgaatcgtctggttctggaggaaatggagatggggaggatttggataagttgaccagtagagctgtcaatgctttgattgttctcggatttgggacctttgcggtgtctaagttgcttacgattgaccatgactattggcatggatggaccctttacgagatagtgaagtatgtacctgagcacaattggattgcctacgaacaagccctccaagcaaaccctgttttagccaaaatggtgataagtggggtagtctatactctaggagattggattgcccaatgttatgaagggaagccgcttttggaatttgatagaacacgcatgttcagatcagggcttgtagggttttccctccatggatccctttctcattattattaccaatttttgtgggcggctatatggaacagcatctattttgtggctttgggggtcttgcgttttgagtccccaaccaagatttttgatgaactgaaggctacatttctacccatgctgactgcaggatggaaactttggccatttgctcatctagttacctatggcctgattcctcttgaacaaaggcttctttgggtggactgtgtggagcttatttgggttactattctctcaacatattcaaatgagaagtcagaatccactatattggaggtatcgtctggagcagattccacttcttcgtcaagcacttctcgtaaggactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

392

Amino Acids

43.76

Weight (kDa)

5.51

Isoelectric Point (pI)

40.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 569, 767, 866
AclI AACGTT 1 cut(s) 6
AclWI GGATC 2 cut(s) 825, 838
AcoI YGGCCR 3 cut(s) 168, 351, 989
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 3 cut(s) 298, 465, 965
AfaI GTAC 1 cut(s) 642
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 464, 1031, 1095
AjnI CCWGG 1 cut(s) 353
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AloI GAACNNNNNNTCC 2 cut(s) 660, 692
AluBI AGCT 6 cut(s) 177, 233, 241, 369, 530, 1063
AluI AGCT 6 cut(s) 177, 233, 241, 369, 530, 1063
Alw21I GWGCWC 1 cut(s) 651
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 2 cut(s) 825, 838
AoxI GGCC 5 cut(s) 168, 325, 351, 989, 1015
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 776
ArsI GACNNNNNNTTYG 2 cut(s) 1088, 1120
AspS9I GGNCC 3 cut(s) 326, 561, 615
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 718
AvaII GGWCC 2 cut(s) 561, 615
BaeGI GKGCMC 1 cut(s) 307
BalI TGGCCA 2 cut(s) 170, 991
BamHI GGATCC 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 1 cut(s) 242
BccI CCATC 6 cut(s) 188, 337, 431, 491, 606, 972
BciT130I CCWGG 1 cut(s) 355
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 207
BfaI CTAG 2 cut(s) 731, 1004
BfmI CTRYAG 2 cut(s) 50, 972
BglII AGATCT 1 cut(s) 71
BisI GCNGC 3 cut(s) 231, 767, 867
BlsI GCNGC 3 cut(s) 232, 768, 868
Bme1390I CCNGG 2 cut(s) 324, 355
Bme18I GGWCC 2 cut(s) 561, 615
BmgT120I GGNCC 3 cut(s) 326, 561, 615
BmiI GGNNCC 3 cut(s) 562, 617, 832
BmrFI CCNGG 2 cut(s) 324, 355
BmrI ACTGGG 1 cut(s) 273
BmsI GCATC 1 cut(s) 891
BmuI ACTGGG 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 2 cut(s) 504, 1155
Bpu10I CCTNAGC 1 cut(s) 645
BpuMI CCSGG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 826
BsaXI ACNNNNNCTCC 4 cut(s) 660, 690, 1115, 1145
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse118I RCCGGY 1 cut(s) 423
Bse1I ACTGG 2 cut(s) 279, 522
BseBI CCWGG 1 cut(s) 355
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 826
BseGI GGATG 3 cut(s) 180, 617, 983
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 2 cut(s) 279, 522
BseRI GAGGAG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 5 cut(s) 170, 327, 353, 991, 1017
BshVI ATCGAT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 651
BsiSI CCGG 2 cut(s) 324, 424
BslFI GGGAC 2 cut(s) 574, 904
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 207
BsmBI CGTCTC 1 cut(s) 207
BsmFI GGGAC 2 cut(s) 574, 904
BsnI GGCC 5 cut(s) 170, 327, 353, 991, 1017
Bsp1286I GDGCHC 2 cut(s) 307, 651
Bsp143I GATC 4 cut(s) 71, 412, 800, 830
Bsp19I CCATGG 1 cut(s) 826
BspACI CCGC 3 cut(s) 569, 767, 866
BspANI GGCC 5 cut(s) 170, 327, 353, 991, 1017
BspCNI CTCAG 1 cut(s) 637
BspDI ATCGAT 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 562, 617, 832
BspMAI CTGCAG 1 cut(s) 976
BspPI GGATC 2 cut(s) 825, 838
BsrFI RCCGGY 1 cut(s) 423
BsrI ACTGG 2 cut(s) 279, 522
BssAI RCCGGY 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 826
BssMI GATC 4 cut(s) 71, 412, 800, 830
BssT1I CCWWGG 1 cut(s) 826
Bst2UI CCWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 376, 1055
Bst6I CTCTTC 2 cut(s) 291, 441
BstDEI CTNAG 2 cut(s) 576, 645
BstDSI CCRYGG 1 cut(s) 826
BstF5I GGATG 3 cut(s) 180, 617, 983
BstKTI GATC 4 cut(s) 74, 415, 803, 833
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 4 cut(s) 71, 412, 800, 830
BstMWI GCNNNNNNNGC 3 cut(s) 324, 536, 680
BstNI CCWGG 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 796
BstSCI CCNGG 2 cut(s) 322, 353
BstSFI CTRYAG 2 cut(s) 50, 972
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 71, 830
BstXI CCANNNNNNTGG 1 cut(s) 1120
BstYI RGATCY 2 cut(s) 71, 830
Bsu15I ATCGAT 1 cut(s) 93
BsuRI GGCC 5 cut(s) 170, 327, 353, 991, 1017
BsuTUI ATCGAT 1 cut(s) 93
BtgI CCRYGG 1 cut(s) 826
BtsCI GGATG 3 cut(s) 180, 617, 983
BtsIMutI CAGTG 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 423
Cfr13I GGNCC 3 cut(s) 326, 561, 615
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 641
CspCI CAANNNNNGTGG 4 cut(s) 147, 182, 842, 877
CviAII CATG 5 cut(s) 596, 608, 793, 827, 964
CviQI GTAC 1 cut(s) 641
DdeI CTNAG 2 cut(s) 576, 645
DpnI GATC 4 cut(s) 73, 414, 802, 832
DpnII GATC 4 cut(s) 71, 412, 800, 830
EaeI YGGCCR 3 cut(s) 168, 351, 989
Eam1104I CTCTTC 2 cut(s) 291, 441
EarI CTCTTC 2 cut(s) 291, 441
Eco130I CCWWGG 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 561, 615
Eco57I CTGAAG 3 cut(s) 298, 465, 965
EcoO109I RGGNCCY 1 cut(s) 561
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 826
ErhI CCWWGG 1 cut(s) 826
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 5 cut(s) 599, 611, 796, 830, 967
FaqI GGGAC 2 cut(s) 574, 904
FatI CATG 5 cut(s) 595, 607, 792, 826, 963
FbaI TGATCA 1 cut(s) 412
Fnu4HI GCNGC 3 cut(s) 231, 767, 867
FokI GGATG 3 cut(s) 167, 624, 990
Fsp4HI GCNGC 3 cut(s) 231, 767, 867
FspBI CTAG 2 cut(s) 731, 1004
GluI GCNGC 3 cut(s) 231, 767, 867
GsuI CTGGAG 2 cut(s) 504, 1155
HaeIII GGCC 5 cut(s) 170, 327, 353, 991, 1017
HapII CCGG 2 cut(s) 324, 424
HgaI GACGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 599, 611, 796, 830, 967
HincII GTYRAC 1 cut(s) 519
HindII GTYRAC 1 cut(s) 519
HindIII AAGCTT 1 cut(s) 367
HinfI GANTC 5 cut(s) 470, 917, 1021, 1109, 1142
HpaII CCGG 2 cut(s) 324, 424
HphI GGTGA 1 cut(s) 718
Hpy166II GTNNAC 2 cut(s) 519, 1051
Hpy188I TCNGA 6 cut(s) 76, 445, 469, 554, 800, 1108
Hpy188III TCNNGA 4 cut(s) 416, 483, 1028, 1134
Hpy8I GTNNAC 2 cut(s) 519, 1051
HpyAV CCTTC 2 cut(s) 752, 940
HpyCH4III ACNGT 2 cut(s) 376, 1055
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 974
HpyF10VI GCNNNNNNNGC 3 cut(s) 324, 536, 680
HpyF3I CTNAG 2 cut(s) 576, 645
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 5 cut(s) 599, 611, 796, 830, 967
Ksp22I TGATCA 1 cut(s) 412
Kzo9I GATC 4 cut(s) 71, 412, 800, 830
LmnI GCTCC 3 cut(s) 182, 1060, 1136
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 891
MaeI CTAG 2 cut(s) 731, 1004
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 5 cut(s) 40, 140, 385, 1006, 1072
MalI GATC 4 cut(s) 73, 414, 802, 832
MboI GATC 4 cut(s) 71, 412, 800, 830
MboII GAAGA 7 cut(s) 77, 278, 286, 346, 452, 458, 1143
MfeI CAATTG 1 cut(s) 652
MflI RGATCY 2 cut(s) 71, 830
MhlI GDGCHC 2 cut(s) 307, 651
MlsI TGGCCA 2 cut(s) 170, 991
MluCI AATT 4 cut(s) 129, 652, 776, 854
MluNI TGGCCA 2 cut(s) 170, 991
MlyI GAGTC 1 cut(s) 926
Mox20I TGGCCA 2 cut(s) 170, 991
MscI TGGCCA 2 cut(s) 170, 991
MseI TTAA 3 cut(s) 113, 219, 257
Msp20I TGGCCA 2 cut(s) 170, 991
MspI CCGG 2 cut(s) 324, 424
MspR9I CCNGG 2 cut(s) 324, 355
MunI CAATTG 1 cut(s) 652
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 3 cut(s) 324, 536, 680
NciI CCSGG 1 cut(s) 324
NcoI CCATGG 1 cut(s) 826
NdeII GATC 4 cut(s) 71, 412, 800, 830
NlaIII CATG 5 cut(s) 599, 611, 796, 830, 967
NlaIV GGNNCC 3 cut(s) 562, 617, 832
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 3 cut(s) 40, 140, 385
NspI RCATGY 1 cut(s) 796
PfeI GAWTC 4 cut(s) 470, 1021, 1109, 1142
PkrI GCNGC 3 cut(s) 232, 768, 868
PleI GAGTC 1 cut(s) 925
PpsI GAGTC 1 cut(s) 925
PpuMI RGGWCCY 1 cut(s) 561
Psp1406I AACGTT 1 cut(s) 6
Psp5II RGGWCCY 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 353
PspGI CCWGG 1 cut(s) 353
PspN4I GGNNCC 3 cut(s) 562, 617, 832
PspPI GGNCC 3 cut(s) 326, 561, 615
PspPPI RGGWCCY 1 cut(s) 561
PstI CTGCAG 1 cut(s) 976
PsuI RGATCY 2 cut(s) 71, 830
RsaI GTAC 1 cut(s) 642
RsaNI GTAC 1 cut(s) 641
SaqAI TTAA 3 cut(s) 113, 219, 257
SatI GCNGC 3 cut(s) 231, 767, 867
Sau3AI GATC 4 cut(s) 71, 412, 800, 830
Sau96I GGNCC 3 cut(s) 326, 561, 615
SchI GAGTC 1 cut(s) 926
ScrFI CCNGG 2 cut(s) 324, 355
SduI GDGCHC 2 cut(s) 307, 651
SfaNI GCATC 1 cut(s) 891
SfcI CTRYAG 2 cut(s) 50, 972
SinI GGWCC 2 cut(s) 561, 615
Sse9I AATT 4 cut(s) 129, 652, 776, 854
SsiI CCGC 3 cut(s) 569, 767, 866
SspMI CTAG 2 cut(s) 731, 1004
StyD4I CCNGG 2 cut(s) 322, 353
StyI CCWWGG 1 cut(s) 826
TaaI ACNGT 2 cut(s) 376, 1055
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 93, 332
TasI AATT 4 cut(s) 129, 652, 776, 854
TauI GCSGC 2 cut(s) 769, 869
TfiI GAWTC 4 cut(s) 470, 1021, 1109, 1142
Tru1I TTAA 3 cut(s) 113, 219, 257
Tru9I TTAA 3 cut(s) 113, 219, 257
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 3 cut(s) 40, 140, 385
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 3 cut(s) 40, 140, 385
TspDTI ATGAA 3 cut(s) 17, 771, 954
TspGWI ACGGA 2 cut(s) 140, 404
TspRI CASTG 1 cut(s) 390
VpaK11BI GGWCC 2 cut(s) 561, 615
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 796
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
XspI CTAG 2 cut(s) 731, 1004
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.