MD09G1090700.v1.1

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0010816
Physical Location & Seq
Reverse (-)
6639135 .. 6642307
3173 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1090700.v1.1.491

Sequence Viewer

Length: 1059 bp
ATGTCTACTCTAAACATAATCGCAGCTCACAACCTCCCTTCACCCTCAACCTCCTCCTTTGCTGCTCAATCTCACAAACCCAACTCGCTTTCACTCTTCTTCTGCACCCAAGCCTCCAGCAAACCCGACCCACCTAGGCTTTCGGGCTTCCCGACCCGGAAAAAACGAAGCTGGATTGTGGGGTCGGTCACGGAGGACAGAGAGGTGGTTCCATTGAAGGAAAAACTTGCAGAGGAGCAAGATAGCAGGTTACTGGTTAATGGGTCGGAAGAGTTTCAGGCTCTTTCGACATCGTCGGAGGAGAAAGGAGAGGGGGATGATTTGGATAAGCTGACGAGCAGAGCAATTAATGCGTTGATTGTTCTGGGATTTGGGACCTTTGCGGTCTCTAAGTTGCTCACAATCGACCACGATTATTGGCATGGATGGACACTTTATGAGATACTAAGATATGTACCGGAACACAATTGGATTGCATATGAACAGGCTCTCAAAGCAAATCCCGTTTTTGCCAAAATGGTGATAAGTGGGGTTGTCTATACTCTAGGAGATTGGATTGCCCAATGTTTTGAAGGGAAGCCACTTTTGGATTTTGACCGGAAACGCATGTTCAGATCGGGCCTTGTTGGGTTTACTTTCCATGGATCCCTTTCCCATTTTTATTACCAATTTTGTGAGGCTCTTTTTCCTTTGGAGGATTGGTGGGTGGTCCCTGCCAAAATAGCCTTTGATCAAACAGTCTGGTCAGCGATTTGGAACAGCATCTATTTTGTGGTTTTGGGGTTCTTGCGTTTTGAGTCCCCAACCAAGATTTTTGATGAATTGAGGGCTACATTTGTGCCAATGCTGACAGCGGGATGGAAACTTTGGCCATTTGCTCATGTGGTTACGTATGGCCTGATCCCTGTTGAACAAAGGCTTCTTTGGGTGGACTGTGTGGAGCTTATTTGGGTTACTATTCTCTCAACTTATTCAAATGAGAATGCAGATTCCAGTTTATCCGAGGCATCTTCTGGTGCAGATTCTGCTTCTTCGTCAAGCAGTTCTTCAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

353

Amino Acids

39.6

Weight (kDa)

5.34

Isoelectric Point (pI)

45.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 261 - 322 1.4e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 383, 854
AclWI GGATC 3 cut(s) 639, 652, 895
AcoI YGGCCR 1 cut(s) 869
AfaI GTAC 1 cut(s) 456
AgsI TTSAA 5 cut(s) 217, 572, 911, 975, 1050
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 4 cut(s) 26, 171, 331, 943
AluI AGCT 4 cut(s) 26, 171, 331, 943
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 3 cut(s) 639, 652, 895
AlwNI CAGNNNCTG 1 cut(s) 1025
AoxI GGCC 3 cut(s) 619, 869, 895
ApeKI GCWGC 2 cut(s) 23, 62
AseI ATTAAT 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 273
AspA2I CCTAGG 1 cut(s) 134
AspS9I GGNCC 3 cut(s) 375, 619, 709
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 33, 532
AvaII GGWCC 2 cut(s) 375, 709
AvrII CCTAGG 1 cut(s) 134
BalI TGGCCA 1 cut(s) 871
BamHI GGATCC 1 cut(s) 644
BbvI GCAGC 2 cut(s) 35, 49
BccI CCATC 2 cut(s) 420, 852
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 2 cut(s) 135, 545
BfuAI ACCTGC 1 cut(s) 237
BisI GCNGC 2 cut(s) 24, 63
BlnI CCTAGG 1 cut(s) 134
BlsI GCNGC 2 cut(s) 25, 64
Bme1390I CCNGG 1 cut(s) 157
Bme18I GGWCC 2 cut(s) 375, 709
BmgT120I GGNCC 3 cut(s) 375, 619, 709
BmiI GGNNCC 4 cut(s) 210, 376, 646, 711
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 771, 1016
BpmI CTGGAG 1 cut(s) 100
BpuMI CCSGG 1 cut(s) 157
BsaAI YACGTR 1 cut(s) 891
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 134, 640, 1002
BsaWI WCCGGW 2 cut(s) 457, 597
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bse1I ACTGG 2 cut(s) 258, 993
BseDI CCNNGG 3 cut(s) 134, 640, 1002
BseGI GGATG 3 cut(s) 322, 431, 863
BseNI ACTGG 2 cut(s) 258, 993
BseRI GAGGAG 3 cut(s) 43, 248, 314
BseXI GCAGC 2 cut(s) 35, 49
BsgI GTGCAG 2 cut(s) 88, 1038
BshFI GGCC 3 cut(s) 621, 871, 897
BsiSI CCGG 3 cut(s) 157, 458, 598
BslFI GGGAC 3 cut(s) 388, 695, 784
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 3 cut(s) 388, 695, 784
BsmI GAATGC 1 cut(s) 988
BsnI GGCC 3 cut(s) 621, 871, 897
Bso31I GGTCTC 1 cut(s) 391
Bsp143I GATC 4 cut(s) 614, 644, 730, 900
Bsp19I CCATGG 1 cut(s) 640
BspACI CCGC 2 cut(s) 383, 854
BspANI GGCC 3 cut(s) 621, 871, 897
BspLI GGNNCC 4 cut(s) 210, 376, 646, 711
BspMI ACCTGC 1 cut(s) 237
BspPI GGATC 3 cut(s) 639, 652, 895
BspTNI GGTCTC 1 cut(s) 391
BsrI ACTGG 2 cut(s) 258, 993
BssECI CCNNGG 3 cut(s) 134, 640, 1002
BssMI GATC 4 cut(s) 614, 644, 730, 900
BssT1I CCWWGG 2 cut(s) 134, 640
Bst4CI ACNGT 2 cut(s) 739, 935
Bst6I CTCTTC 2 cut(s) 101, 264
BstAPI GCANNNNNTGC 2 cut(s) 350, 1025
BstBAI YACGTR 1 cut(s) 891
BstDEI CTNAG 2 cut(s) 390, 446
BstDSI CCRYGG 1 cut(s) 640
BstF5I GGATG 3 cut(s) 322, 431, 863
BstKTI GATC 4 cut(s) 617, 647, 733, 903
BstMAI GTCTC 1 cut(s) 391
BstMBI GATC 4 cut(s) 614, 644, 730, 900
BstMWI GCNNNNNNNGC 4 cut(s) 350, 494, 722, 1025
BstNSI RCATGY 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 155
BstSNI TACGTA 1 cut(s) 891
BstV1I GCAGC 2 cut(s) 35, 49
BstX2I RGATCY 1 cut(s) 644
BstYI RGATCY 1 cut(s) 644
BsuRI GGCC 3 cut(s) 621, 871, 897
BtgI CCRYGG 1 cut(s) 640
BtsCI GGATG 3 cut(s) 322, 431, 863
BveI ACCTGC 1 cut(s) 237
CaiI CAGNNNCTG 1 cut(s) 1025
Cfr13I GGNCC 3 cut(s) 375, 619, 709
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 398, 433
CviAII CATG 4 cut(s) 422, 607, 641, 881
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 2 cut(s) 390, 446
DpnI GATC 4 cut(s) 616, 646, 732, 902
DpnII GATC 4 cut(s) 614, 644, 730, 900
EaeI YGGCCR 1 cut(s) 869
Eam1104I CTCTTC 2 cut(s) 101, 264
EarI CTCTTC 2 cut(s) 101, 264
Eco105I TACGTA 1 cut(s) 891
Eco130I CCWWGG 2 cut(s) 134, 640
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 375, 709
EcoO109I RGGNCCY 1 cut(s) 375
EcoT14I CCWWGG 2 cut(s) 134, 640
ErhI CCWWGG 2 cut(s) 134, 640
FaeI CATG 4 cut(s) 425, 610, 644, 884
FalI AAGNNNNNCTT 1 cut(s) 1030
FaqI GGGAC 3 cut(s) 388, 695, 784
FatI CATG 4 cut(s) 421, 606, 640, 880
FauI CCCGC 1 cut(s) 847
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 730
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 24, 63
FokI GGATG 3 cut(s) 329, 438, 870
Fsp4HI GCNGC 2 cut(s) 24, 63
FspBI CTAG 2 cut(s) 135, 545
GluI GCNGC 2 cut(s) 24, 63
GsuI CTGGAG 1 cut(s) 100
HaeIII GGCC 3 cut(s) 621, 871, 897
HapII CCGG 3 cut(s) 157, 458, 598
Hin1II CATG 4 cut(s) 425, 610, 644, 884
HinfI GANTC 3 cut(s) 797, 989, 1022
HpaII CCGG 3 cut(s) 157, 458, 598
HphI GGTGA 2 cut(s) 33, 532
Hpy166II GTNNAC 3 cut(s) 6, 633, 931
Hpy188I TCNGA 4 cut(s) 268, 298, 614, 1003
Hpy188III TCNNGA 1 cut(s) 151
Hpy8I GTNNAC 3 cut(s) 6, 633, 931
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 3 cut(s) 48, 211, 566
HpyCH4III ACNGT 2 cut(s) 739, 935
HpyCH4IV ACGT 1 cut(s) 890
HpyCH4V TGCA 5 cut(s) 105, 230, 476, 986, 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 350, 494, 722, 1025
HpyF3I CTNAG 2 cut(s) 390, 446
HpySE526I ACGT 1 cut(s) 890
Hsp92II CATG 4 cut(s) 425, 610, 644, 884
Ksp22I TGATCA 1 cut(s) 730
Kzo9I GATC 4 cut(s) 614, 644, 730, 900
LmnI GCTCC 2 cut(s) 235, 940
Lsp1109I GCAGC 2 cut(s) 35, 49
LweI GCATC 2 cut(s) 771, 1016
MaeI CTAG 2 cut(s) 135, 545
MaeII ACGT 1 cut(s) 890
MaeIII GTNAC 4 cut(s) 187, 249, 886, 952
MalI GATC 4 cut(s) 616, 646, 732, 902
MboI GATC 4 cut(s) 614, 644, 730, 900
MboII GAAGA 6 cut(s) 88, 91, 281, 1002, 1023, 1038
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 1 cut(s) 644
MlsI TGGCCA 1 cut(s) 871
MluCI AATT 4 cut(s) 345, 466, 668, 821
MluNI TGGCCA 1 cut(s) 871
MlyI GAGTC 1 cut(s) 806
MmeI TCCRAC 2 cut(s) 246, 276
Mox20I TGGCCA 1 cut(s) 871
MroXI GAANNNNTTC 1 cut(s) 273
MscI TGGCCA 1 cut(s) 871
MseI TTAA 2 cut(s) 258, 348
Msp20I TGGCCA 1 cut(s) 871
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 3 cut(s) 157, 458, 598
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 466
Mva1269I GAATGC 1 cut(s) 988
MwoI GCNNNNNNNGC 4 cut(s) 350, 494, 722, 1025
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 478
NdeII GATC 4 cut(s) 614, 644, 730, 900
NlaIII CATG 4 cut(s) 425, 610, 644, 884
NlaIV GGNNCC 4 cut(s) 210, 376, 646, 711
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 149
PctI GAATGC 1 cut(s) 988
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 989, 1022
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 2 cut(s) 25, 64
PleI GAGTC 1 cut(s) 805
PpsI GAGTC 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 891
PpuMI RGGWCCY 1 cut(s) 375
PshBI ATTAAT 1 cut(s) 348
Psp5II RGGWCCY 1 cut(s) 375
PspN4I GGNNCC 4 cut(s) 210, 376, 646, 711
PspPI GGNCC 3 cut(s) 375, 619, 709
PspPPI RGGWCCY 1 cut(s) 375
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 1 cut(s) 644
PsyI GACNNNGTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 258, 348
SatI GCNGC 2 cut(s) 24, 63
Sau3AI GATC 4 cut(s) 614, 644, 730, 900
Sau96I GGNCC 3 cut(s) 375, 619, 709
SchI GAGTC 1 cut(s) 806
ScrFI CCNGG 1 cut(s) 157
SfaNI GCATC 2 cut(s) 771, 1016
SinI GGWCC 2 cut(s) 375, 709
SnaBI TACGTA 1 cut(s) 891
Sse9I AATT 4 cut(s) 345, 466, 668, 821
SsiI CCGC 2 cut(s) 383, 854
SspMI CTAG 2 cut(s) 135, 545
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 2 cut(s) 134, 640
TaaI ACNGT 2 cut(s) 739, 935
TaiI ACGT 1 cut(s) 893
TaqI TCGA 2 cut(s) 287, 405
TaqII GACCGA 1 cut(s) 175
TasI AATT 4 cut(s) 345, 466, 668, 821
TfiI GAWTC 2 cut(s) 989, 1022
Tru1I TTAA 2 cut(s) 258, 348
Tru9I TTAA 2 cut(s) 258, 348
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 23, 62
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 495, 834
TspGWI ACGGA 1 cut(s) 206
Tth111I GACNNNGTC 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 375, 709
VspI ATTAAT 1 cut(s) 348
XceI RCATGY 1 cut(s) 610
XmaJI CCTAGG 1 cut(s) 134
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 2 cut(s) 135, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.