Rh2AG562700

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0010816
Physical Location & Seq
Forward (+)
79218183 .. 79222197
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG562700.1

Sequence Viewer

Length: 849 bp
ATGGCTACACTTAACATAAACGCAGCTCATAAGCTCACAACCTCCTCCTTAAATCCTCAACCCCACAAACCCAGTTCTCTTCCTTTCTTCTTGTGTGCCCAGAACTTCAGCAGACCCGGCCCATCGAAGAAATGGGTCATCTCGGCCCGGAAAAAACGAAGCTTTACTGTTGGCTCAGTGACGGAGGACAGAGAGGTGGTTGCTGACCAAGAGAGCCGGTTGTTGGTTGATGGGTCTGAAGAGTTTGTGGGTCTTCAATCTGAATCGTCTGGTTCTGGAGGAAATGGAGATGGGGAGGATTTGGATAAGTTGACCAGTAGAGCTGTCAATGCTTTGATTGTTCTCGGATTTGGGACCTTTGCGGTGTCTAAGTTGCTTACGATTGACCATGACTATTGGCATGGATGGACCCTTTACGAGATAGTGAAGTATGTACCTGAGCACAATTGGATTGCCTACGAACAAGCTCTCCAAGCAAACCCTGTTTTAGCCAAAATGGTGATAAGTGGGGTAGTCTATACTCTAGGAGATTGGATTGCCCAATGTTATGAAGGGAAGCCGCTTTTGGAATTTGATAGAACACGCATGTTCAGATCAGGGCTTGTAGGGTTTTCCCTCCATGGATCCCTTTCTCATTATTATTACCAATTTTGTGAGGCTCTTTTTCCTTTGGAAGATTGGTGGGTAGTCCCGGCCAAAATAGCCTTTGACCAAACAGTGTGGGCGGCTATATGGAACAGCATCTATTTTGTGGCTTTGGGGGTCTTGCGTTTTGAGTCCCCAACCAAGATTTTTGATGAACTGAAGGCTACATTTCTACCCATGCTGACTGTAAGAAACTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

282

Amino Acids

31.64

Weight (kDa)

5.98

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 362, 560, 725
AclWI GGATC 2 cut(s) 618, 631
AcoI YGGCCR 1 cut(s) 693
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 3 cut(s) 91, 258, 824
AfaI GTAC 1 cut(s) 435
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 257
AjuI GAANNNNNNNTTGG 2 cut(s) 548, 580
AloI GAACNNNNNNTCC 2 cut(s) 453, 485
AluBI AGCT 5 cut(s) 26, 34, 162, 323, 467
AluI AGCT 5 cut(s) 26, 34, 162, 323, 467
Alw21I GWGCWC 1 cut(s) 444
AlwI GGATC 2 cut(s) 618, 631
AoxI GGCC 3 cut(s) 118, 144, 693
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 569
Asp700I GAANNNNTTC 1 cut(s) 841
AspS9I GGNCC 4 cut(s) 119, 145, 354, 408
AsuC2I CCSGG 3 cut(s) 117, 148, 692
AsuHPI GGTGA 1 cut(s) 511
AvaII GGWCC 2 cut(s) 354, 408
BaeGI GKGCMC 1 cut(s) 100
BamHI GGATCC 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 1 cut(s) 35
BccI CCATC 4 cut(s) 130, 224, 284, 399
BcnI CCSGG 3 cut(s) 117, 148, 692
BfaI CTAG 1 cut(s) 524
BisI GCNGC 3 cut(s) 24, 560, 726
BlsI GCNGC 3 cut(s) 25, 561, 727
Bme1390I CCNGG 3 cut(s) 117, 148, 692
Bme18I GGWCC 2 cut(s) 354, 408
BmgT120I GGNCC 4 cut(s) 119, 145, 354, 408
BmiI GGNNCC 3 cut(s) 355, 410, 625
BmrFI CCNGG 3 cut(s) 117, 148, 692
BmrI ACTGGG 1 cut(s) 66
BmsI GCATC 1 cut(s) 750
BmuI ACTGGG 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 438
BpuMI CCSGG 3 cut(s) 117, 148, 692
BsaJI CCNNGG 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 72, 315
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 223
BseMII CTCAG 2 cut(s) 189, 429
BseNI ACTGG 2 cut(s) 72, 315
BseRI GAGGAG 1 cut(s) 34
BseSI GKGCMC 1 cut(s) 100
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 3 cut(s) 120, 146, 695
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 4 cut(s) 117, 148, 217, 692
BslFI GGGAC 3 cut(s) 367, 674, 763
BslI CCNNNNNNNGG 1 cut(s) 223
BsmFI GGGAC 3 cut(s) 367, 674, 763
BsnI GGCC 3 cut(s) 120, 146, 695
Bsp1286I GDGCHC 2 cut(s) 100, 444
Bsp143I GATC 2 cut(s) 593, 623
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 3 cut(s) 362, 560, 725
BspANI GGCC 3 cut(s) 120, 146, 695
BspCNI CTCAG 2 cut(s) 188, 430
BspLI GGNNCC 3 cut(s) 355, 410, 625
BspPI GGATC 2 cut(s) 618, 631
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 2 cut(s) 72, 315
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 2 cut(s) 593, 623
BssT1I CCWWGG 1 cut(s) 619
Bst4CI ACNGT 3 cut(s) 169, 718, 832
Bst6I CTCTTC 2 cut(s) 84, 234
BstDEI CTNAG 3 cut(s) 175, 369, 438
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 2 cut(s) 596, 626
BstMBI GATC 2 cut(s) 593, 623
BstMWI GCNNNNNNNGC 4 cut(s) 117, 329, 473, 701
BstNSI RCATGY 1 cut(s) 589
BstSCI CCNGG 3 cut(s) 115, 146, 690
BstSLI GKGCMC 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BsuRI GGCC 3 cut(s) 120, 146, 695
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 1 cut(s) 410
BtsIMutI CAGTG 2 cut(s) 183, 723
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 4 cut(s) 119, 145, 354, 408
Csp6I GTAC 1 cut(s) 434
CspCI CAANNNNNGTGG 2 cut(s) 701, 736
CviAII CATG 5 cut(s) 389, 401, 586, 620, 823
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 3 cut(s) 175, 369, 438
DpnI GATC 2 cut(s) 595, 625
DpnII GATC 2 cut(s) 593, 623
EaeI YGGCCR 1 cut(s) 693
Eam1104I CTCTTC 2 cut(s) 84, 234
EarI CTCTTC 2 cut(s) 84, 234
Eco130I CCWWGG 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 354, 408
Eco57I CTGAAG 3 cut(s) 91, 258, 824
EcoO109I RGGNCCY 1 cut(s) 354
EcoT14I CCWWGG 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 619
FaeI CATG 5 cut(s) 392, 404, 589, 623, 826
FalI AAGNNNNNCTT 1 cut(s) 826
FaqI GGGAC 3 cut(s) 367, 674, 763
FatI CATG 5 cut(s) 388, 400, 585, 619, 822
Fnu4HI GCNGC 3 cut(s) 24, 560, 726
FokI GGATG 1 cut(s) 417
Fsp4HI GCNGC 3 cut(s) 24, 560, 726
FspBI CTAG 1 cut(s) 524
GluI GCNGC 3 cut(s) 24, 560, 726
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 3 cut(s) 120, 146, 695
HapII CCGG 4 cut(s) 117, 148, 217, 692
Hin1II CATG 5 cut(s) 392, 404, 589, 623, 826
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 2 cut(s) 263, 776
HpaII CCGG 4 cut(s) 117, 148, 217, 692
HphI GGTGA 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 4 cut(s) 238, 262, 347, 593
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 312
HpyAV CCTTC 2 cut(s) 545, 799
HpyCH4III ACNGT 3 cut(s) 169, 718, 832
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 329, 473, 701
HpyF3I CTNAG 3 cut(s) 175, 369, 438
Hsp92II CATG 5 cut(s) 392, 404, 589, 623, 826
Kzo9I GATC 2 cut(s) 593, 623
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 1 cut(s) 750
MaeI CTAG 1 cut(s) 524
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 595, 625
MboI GATC 2 cut(s) 593, 623
MboII GAAGA 7 cut(s) 71, 79, 139, 245, 251, 686, 834
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 2 cut(s) 100, 444
MluCI AATT 3 cut(s) 445, 569, 647
MlyI GAGTC 1 cut(s) 785
MnlI CCTC 9 cut(s) 52, 55, 66, 178, 187, 272, 289, 626, 649
MroXI GAANNNNTTC 1 cut(s) 841
MseI TTAA 3 cut(s) 12, 50, 847
MspI CCGG 4 cut(s) 117, 148, 217, 692
MspR9I CCNGG 3 cut(s) 117, 148, 692
MunI CAATTG 1 cut(s) 445
MwoI GCNNNNNNNGC 4 cut(s) 117, 329, 473, 701
NciI CCSGG 3 cut(s) 117, 148, 692
NcoI CCATGG 1 cut(s) 619
NdeII GATC 2 cut(s) 593, 623
NlaIII CATG 5 cut(s) 392, 404, 589, 623, 826
NlaIV GGNNCC 3 cut(s) 355, 410, 625
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 589
PdmI GAANNNNTTC 1 cut(s) 841
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 3 cut(s) 25, 561, 727
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
PpuMI RGGWCCY 1 cut(s) 354
Psp5II RGGWCCY 1 cut(s) 354
PspN4I GGNNCC 3 cut(s) 355, 410, 625
PspPI GGNCC 4 cut(s) 119, 145, 354, 408
PspPPI RGGWCCY 1 cut(s) 354
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SaqAI TTAA 3 cut(s) 12, 50, 847
SatI GCNGC 3 cut(s) 24, 560, 726
Sau3AI GATC 2 cut(s) 593, 623
Sau96I GGNCC 4 cut(s) 119, 145, 354, 408
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 3 cut(s) 117, 148, 692
SduI GDGCHC 2 cut(s) 100, 444
SetI ASST 9 cut(s) 28, 36, 44, 164, 198, 325, 359, 439, 469
SfaNI GCATC 1 cut(s) 750
SinI GGWCC 2 cut(s) 354, 408
Sse9I AATT 3 cut(s) 445, 569, 647
SsiI CCGC 3 cut(s) 362, 560, 725
SspMI CTAG 1 cut(s) 524
StyD4I CCNGG 3 cut(s) 115, 146, 690
StyI CCWWGG 1 cut(s) 619
TaaI ACNGT 3 cut(s) 169, 718, 832
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 445, 569, 647
TauI GCSGC 2 cut(s) 562, 728
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 3 cut(s) 12, 50, 847
Tru9I TTAA 3 cut(s) 12, 50, 847
TscAI CASTG 2 cut(s) 183, 723
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 564, 813
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 2 cut(s) 183, 723
VpaK11BI GGWCC 2 cut(s) 354, 408
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 841
XspI CTAG 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.