pycom17g07880

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0010816
Physical Location & Seq
Reverse (-)
5852702 .. 5856333
3632 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g07880.4

Sequence Viewer

Length: 1356 bp
ATGGCTACCCTTAACATGATCGCAGCTCACAACCTCCCTTCACCCGCAACCTCCTCCTTCGCCACCCAATCTCACAAACCCAACTCGCTTTCACTCTTCTTCTGCACCCAAACCTCCAGCAAGCCCCACCCACCACGGCTTTCGGCCTTCCCGACCCGGAAAAAACGAAGCTGGACTGTTGGATCGGTCGCGGAGGACAGAGAGGTGGTTCCCTTGAAGAAGAAGGATACAGGGGAACAAGATAGCGGCTTGCTGCTTAATGGGTCGGGAGAATTTCAGGCTCTTTCGACATCGTCGGAGGAGAAAGGAGAGGGGGATGATTTGGATAAGCTGACGAGCAGAGCTATTAATGCGTTAATTGTTCTGGGATTTGGGACCCTTGCGGTCTCTAAGTTGCTCACAATCGACCACGATTATTGGCATGGATGGACACTTTATGAGATACTAAGATATGTACCGGAACACAATTGGATTGCATATGAACAGGCTCTCAAAGCAAATCCTGTTTTTGCCAAAATGGTGATAAGTGGGGTTGTCTATACTCTAGGAGATTGGATTGCTCAATGTTTTGAAGGGAAGCCGCTTTTGGAGTTTGACCGGAAACGCATATTCAGATCAGGCCTTGTTGGCTTTACTTTCCATGGATCTCTTTCCCATTATTATTACCAATTTTGTGAGGCTCTTTTTCCTTTGGAGGATTGGTGGGTTGTCCCTGCCAAAATAGCCTTTGATCAAACAGTGTGGTCAGCGATTTGGAACAGCATCTATTTTGTGGTTTTGGGGTTCTTGCGTTTCGAATCCCCAACCAAGATTTTTGATGAACTTAGGGCTACATTTGTGCCCATGCTGACTGCGGGATGGAAGCTTTGGCCATTCGCTCATGTCATTACCTATGGCCTGATCCCTGTTGAACAAAGACTTCTTTGGGTGGACTGTGTGGAGCTAATTTGGGTTACTATTCTCTCAACTTATTCAAATGAGAAGGCAGATTCTAGTTTATCTGAGGCATCTTCTGGAGCAGATTCTGCTTCCTCGTCAAGCAATTCTTCAAAGCAGCACCCCCAACATTTGAAAAATTACAGATCGAACCCCGGATCTGAAAAATCTCTTGCACCTAGATCCCAGAACCCCCTTTTAGATCCTCGCCCGCGTGAACCGGGTCAGAAAACAACGATGGCGAAGGTCGAAGAATTGCACCAAGAATCCAAGGACCCCAGCGTCGCGAAGAGTAAGAAGAAGAGGAACCACGGCTCAACCGAGTTCTTCGTCTTCGTCGATTACCTCTTCCTCTCCATATTATTCGCGTTCCTCTGCTTCATCATCCTTAAGATTACATCGGATTCTTTCTATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

452

Amino Acids

50.89

Weight (kDa)

7.22

Isoelectric Point (pI)

41.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1217
AccII CGCG 4 cut(s) 191, 1150, 1223, 1304
AciI CCGC 7 cut(s) 45, 191, 246, 383, 581, 854, 1148
AclWI GGATC 6 cut(s) 190, 652, 895, 1102, 1113, 1133
AcoI YGGCCR 1 cut(s) 869
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 1 cut(s) 456
AflII CTTAAG 1 cut(s) 1325
AgsI TTSAA 6 cut(s) 217, 572, 911, 975, 1050, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 6 cut(s) 26, 171, 331, 344, 865, 943
AluI AGCT 6 cut(s) 26, 171, 331, 344, 865, 943
Alw26I GTCTC 1 cut(s) 391
AlwI GGATC 6 cut(s) 190, 652, 895, 1102, 1113, 1133
AlwNI CAGNNNCTG 1 cut(s) 1025
AoxI GGCC 4 cut(s) 144, 619, 869, 895
ApeKI GCWGC 3 cut(s) 23, 253, 1054
ApoI RAATTY 1 cut(s) 272
AseI ATTAAT 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 375, 1210
AsuC2I CCSGG 3 cut(s) 157, 1092, 1158
AsuHPI GGTGA 2 cut(s) 33, 532
AsuII TTCGAA 1 cut(s) 795
AvaII GGWCC 2 cut(s) 375, 1210
BaeGI GKGCMC 1 cut(s) 843
BalI TGGCCA 1 cut(s) 871
BbsI GAAGAC 1 cut(s) 1261
BbvI GCAGC 3 cut(s) 35, 240, 1066
BccI CCATC 3 cut(s) 420, 852, 1168
BceAI ACGGC 2 cut(s) 152, 1264
BciVI GTATCC 1 cut(s) 220
BclI TGATCA 1 cut(s) 730
BcnI CCSGG 3 cut(s) 157, 1092, 1158
BcoDI GTCTC 1 cut(s) 391
BfaI CTAG 4 cut(s) 545, 993, 1116, 1354
BfrI CTTAAG 1 cut(s) 1325
BfuI GTATCC 1 cut(s) 220
BglI GCCNNNNNGGC 1 cut(s) 627
BisI GCNGC 5 cut(s) 24, 247, 254, 581, 1055
BlsI GCNGC 5 cut(s) 25, 248, 255, 582, 1056
Bme1390I CCNGG 3 cut(s) 157, 1092, 1158
Bme18I GGWCC 2 cut(s) 375, 1210
BmgT120I GGNCC 2 cut(s) 375, 1210
BmiI GGNNCC 5 cut(s) 210, 376, 377, 1212, 1244
BmrFI CCNGG 3 cut(s) 157, 1092, 1158
BmsI GCATC 2 cut(s) 771, 1016
BpiI GAAGAC 1 cut(s) 1261
BpmI CTGGAG 2 cut(s) 100, 1035
Bpu14I TTCGAA 1 cut(s) 795
BpuMI CCSGG 3 cut(s) 157, 1092, 1158
BsaI GGTCTC 1 cut(s) 391
BsaJI CCNNGG 5 cut(s) 134, 640, 1090, 1206, 1246
BsaWI WCCGGW 2 cut(s) 457, 597
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
BseDI CCNNGG 5 cut(s) 134, 640, 1090, 1206, 1246
BseGI GGATG 4 cut(s) 322, 431, 863, 1320
BseMII CTCAG 1 cut(s) 993
BseRI GAGGAG 2 cut(s) 43, 314
BseSI GKGCMC 1 cut(s) 843
BseXI GCAGC 3 cut(s) 35, 240, 1066
BseYI CCCAGC 1 cut(s) 1214
BsgI GTGCAG 1 cut(s) 88
Bsh1236I CGCG 4 cut(s) 191, 1150, 1223, 1304
Bsh1285I CGRYCG 1 cut(s) 189
BshFI GGCC 4 cut(s) 146, 621, 871, 897
BsiEI CGRYCG 1 cut(s) 189
BsiSI CCGG 5 cut(s) 157, 458, 598, 1092, 1157
BslFI GGGAC 2 cut(s) 388, 695
BsmAI GTCTC 1 cut(s) 391
BsmFI GGGAC 2 cut(s) 388, 695
BsnI GGCC 4 cut(s) 146, 621, 871, 897
Bso31I GGTCTC 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 795
Bsp1286I GDGCHC 1 cut(s) 843
Bsp19I CCATGG 1 cut(s) 640
Bsp68I TCGCGA 1 cut(s) 1223
BspACI CCGC 7 cut(s) 45, 191, 246, 383, 581, 854, 1148
BspANI GGCC 4 cut(s) 146, 621, 871, 897
BspCNI CTCAG 1 cut(s) 994
BspFNI CGCG 4 cut(s) 191, 1150, 1223, 1304
BspLI GGNNCC 5 cut(s) 210, 376, 377, 1212, 1244
BspPI GGATC 6 cut(s) 190, 652, 895, 1102, 1113, 1133
BspT104I TTCGAA 1 cut(s) 795
BspTI CTTAAG 1 cut(s) 1325
BspTNI GGTCTC 1 cut(s) 391
BssECI CCNNGG 5 cut(s) 134, 640, 1090, 1206, 1246
BssT1I CCWWGG 2 cut(s) 640, 1206
Bst4CI ACNGT 3 cut(s) 178, 739, 935
Bst6I CTCTTC 4 cut(s) 101, 1220, 1232, 1289
BstAFI CTTAAG 1 cut(s) 1325
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstBI TTCGAA 1 cut(s) 795
BstC8I GCNNGC 3 cut(s) 122, 251, 1148
BstDEI CTNAG 4 cut(s) 390, 446, 824, 1002
BstDSI CCRYGG 3 cut(s) 134, 640, 1246
BstF5I GGATG 4 cut(s) 322, 431, 863, 1320
BstFNI CGCG 4 cut(s) 191, 1150, 1223, 1304
BstMAI GTCTC 1 cut(s) 391
BstMCI CGRYCG 1 cut(s) 189
BstMWI GCNNNNNNNGC 5 cut(s) 350, 494, 627, 722, 1025
BstSCI CCNGG 3 cut(s) 155, 1090, 1156
BstSLI GKGCMC 1 cut(s) 843
BstUI CGCG 4 cut(s) 191, 1150, 1223, 1304
BstV1I GCAGC 3 cut(s) 35, 240, 1066
BstV2I GAAGAC 1 cut(s) 1261
BstX2I RGATCY 4 cut(s) 644, 1094, 1118, 1138
BstYI RGATCY 4 cut(s) 644, 1094, 1118, 1138
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 4 cut(s) 146, 621, 871, 897
BtgI CCRYGG 3 cut(s) 134, 640, 1246
BtsCI GGATG 4 cut(s) 322, 431, 863, 1320
BtsIMutI CAGTG 1 cut(s) 744
BtuMI TCGCGA 1 cut(s) 1223
Cac8I GCNNGC 3 cut(s) 122, 251, 1148
CaiI CAGNNNCTG 1 cut(s) 1025
Cfr13I GGNCC 2 cut(s) 375, 1210
CseI GACGC 1 cut(s) 1207
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 4 cut(s) 398, 433, 722, 757
CviAII CATG 5 cut(s) 16, 422, 641, 844, 881
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 4 cut(s) 390, 446, 824, 1002
DrdI GACNNNNNNGTC 1 cut(s) 1217
DseDI GACNNNNNNGTC 1 cut(s) 1217
EaeI YGGCCR 1 cut(s) 869
Eam1104I CTCTTC 4 cut(s) 101, 1220, 1232, 1289
EarI CTCTTC 4 cut(s) 101, 1220, 1232, 1289
Eco130I CCWWGG 2 cut(s) 640, 1206
Eco147I AGGCCT 1 cut(s) 621
Eco31I GGTCTC 1 cut(s) 391
Eco47I GGWCC 2 cut(s) 375, 1210
EcoO109I RGGNCCY 2 cut(s) 375, 1210
EcoT14I CCWWGG 2 cut(s) 640, 1206
ErhI CCWWGG 2 cut(s) 640, 1206
FaeI CATG 5 cut(s) 19, 425, 644, 847, 884
FalI AAGNNNNNCTT 2 cut(s) 1030, 1062
FaqI GGGAC 2 cut(s) 388, 695
FatI CATG 5 cut(s) 15, 421, 640, 843, 880
FauI CCCGC 3 cut(s) 52, 847, 1155
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 730
Fnu4HI GCNGC 5 cut(s) 24, 247, 254, 581, 1055
FokI GGATG 4 cut(s) 329, 438, 870, 1307
Fsp4HI GCNGC 5 cut(s) 24, 247, 254, 581, 1055
FspBI CTAG 4 cut(s) 545, 993, 1116, 1354
GluI GCNGC 5 cut(s) 24, 247, 254, 581, 1055
GsaI CCCAGC 1 cut(s) 1218
GsuI CTGGAG 2 cut(s) 100, 1035
HaeIII GGCC 4 cut(s) 146, 621, 871, 897
HapII CCGG 5 cut(s) 157, 458, 598, 1092, 1157
HgaI GACGC 1 cut(s) 1207
Hin1II CATG 5 cut(s) 19, 425, 644, 847, 884
HindIII AAGCTT 1 cut(s) 863
HinfI GANTC 5 cut(s) 797, 989, 1022, 1202, 1340
HpaII CCGG 5 cut(s) 157, 458, 598, 1092, 1157
HphI GGTGA 2 cut(s) 33, 532
Hpy166II GTNNAC 2 cut(s) 931, 1154
Hpy188I TCNGA 6 cut(s) 298, 614, 1003, 1099, 1164, 1339
Hpy188III TCNNGA 4 cut(s) 151, 267, 1014, 1222
Hpy8I GTNNAC 2 cut(s) 931, 1154
Hpy99I CGWCG 3 cut(s) 298, 1223, 1277
HpyAV CCTTC 7 cut(s) 48, 67, 157, 217, 566, 976, 1174
HpyCH4III ACNGT 3 cut(s) 178, 739, 935
HpyCH4V TGCA 4 cut(s) 105, 476, 1112, 1195
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 494, 627, 722, 1025
HpyF3I CTNAG 4 cut(s) 390, 446, 824, 1002
Hsp92II CATG 5 cut(s) 19, 425, 644, 847, 884
KflI GGGWCCC 1 cut(s) 375
Ksp22I TGATCA 1 cut(s) 730
LmnI GCTCC 2 cut(s) 940, 1016
Lsp1109I GCAGC 3 cut(s) 35, 240, 1066
LweI GCATC 2 cut(s) 771, 1016
MaeI CTAG 4 cut(s) 545, 993, 1116, 1354
MaeIII GTNAC 1 cut(s) 952
MfeI CAATTG 1 cut(s) 466
MflI RGATCY 4 cut(s) 644, 1094, 1118, 1138
MhlI GDGCHC 1 cut(s) 843
MlsI TGGCCA 1 cut(s) 871
MluCI AATT 8 cut(s) 272, 357, 466, 668, 945, 1042, 1075, 1190
MluNI TGGCCA 1 cut(s) 871
MmeI TCCRAC 2 cut(s) 160, 276
Mox20I TGGCCA 1 cut(s) 871
MscI TGGCCA 1 cut(s) 871
MseI TTAA 5 cut(s) 12, 258, 348, 356, 1326
Msp20I TGGCCA 1 cut(s) 871
MspCI CTTAAG 1 cut(s) 1325
MspI CCGG 5 cut(s) 157, 458, 598, 1092, 1157
MspR9I CCNGG 3 cut(s) 157, 1092, 1158
MunI CAATTG 1 cut(s) 466
MvnI CGCG 4 cut(s) 191, 1150, 1223, 1304
MwoI GCNNNNNNNGC 5 cut(s) 350, 494, 627, 722, 1025
NciI CCSGG 3 cut(s) 157, 1092, 1158
NcoI CCATGG 1 cut(s) 640
NdeI CATATG 1 cut(s) 478
NlaIII CATG 5 cut(s) 19, 425, 644, 847, 884
NlaIV GGNNCC 5 cut(s) 210, 376, 377, 1212, 1244
NruI TCGCGA 1 cut(s) 1223
NspV TTCGAA 1 cut(s) 795
PceI AGGCCT 1 cut(s) 621
PcsI WCGNNNNNNNCGW 3 cut(s) 149, 1254, 1272
PfeI GAWTC 5 cut(s) 797, 989, 1022, 1202, 1340
PflFI GACNNNGTC 1 cut(s) 292
PkrI GCNGC 5 cut(s) 25, 248, 255, 582, 1056
PpuMI RGGWCCY 2 cut(s) 375, 1210
PshBI ATTAAT 1 cut(s) 348
Psp5II RGGWCCY 2 cut(s) 375, 1210
PspFI CCCAGC 1 cut(s) 1214
PspN4I GGNNCC 5 cut(s) 210, 376, 377, 1212, 1244
PspPI GGNCC 2 cut(s) 375, 1210
PspPPI RGGWCCY 2 cut(s) 375, 1210
PstNI CAGNNNCTG 1 cut(s) 1025
PsuI RGATCY 4 cut(s) 644, 1094, 1118, 1138
PsyI GACNNNGTC 1 cut(s) 292
RruI TCGCGA 1 cut(s) 1223
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 5 cut(s) 12, 258, 348, 356, 1326
SatI GCNGC 5 cut(s) 24, 247, 254, 581, 1055
Sau96I GGNCC 2 cut(s) 375, 1210
ScrFI CCNGG 3 cut(s) 157, 1092, 1158
SduI GDGCHC 1 cut(s) 843
SfaNI GCATC 2 cut(s) 771, 1016
SfuI TTCGAA 1 cut(s) 795
SinI GGWCC 2 cut(s) 375, 1210
SmlI CTYRAG 1 cut(s) 1325
SmoI CTYRAG 1 cut(s) 1325
Sse9I AATT 8 cut(s) 272, 357, 466, 668, 945, 1042, 1075, 1190
SseBI AGGCCT 1 cut(s) 621
SsiI CCGC 7 cut(s) 45, 191, 246, 383, 581, 854, 1148
SspMI CTAG 4 cut(s) 545, 993, 1116, 1354
StuI AGGCCT 1 cut(s) 621
StyD4I CCNGG 3 cut(s) 155, 1090, 1156
StyI CCWWGG 2 cut(s) 640, 1206
TaaI ACNGT 3 cut(s) 178, 739, 935
TaqI TCGA 6 cut(s) 287, 405, 795, 1085, 1185, 1275
TaqII GACCGA 1 cut(s) 175
TasI AATT 8 cut(s) 272, 357, 466, 668, 945, 1042, 1075, 1190
TauI GCSGC 2 cut(s) 249, 583
TfiI GAWTC 5 cut(s) 797, 989, 1022, 1202, 1340
Tru1I TTAA 5 cut(s) 12, 258, 348, 356, 1326
Tru9I TTAA 5 cut(s) 12, 258, 348, 356, 1326
TscAI CASTG 1 cut(s) 744
TseI GCWGC 3 cut(s) 23, 253, 1054
TspDTI ATGAA 3 cut(s) 495, 834, 1306
TspRI CASTG 1 cut(s) 744
Tth111I GACNNNGTC 1 cut(s) 292
Vha464I CTTAAG 1 cut(s) 1325
VpaK11BI GGWCC 2 cut(s) 375, 1210
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 272
XspI CTAG 4 cut(s) 545, 993, 1116, 1354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.