FvH4_6g45010

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0010816
Physical Location & Seq
Forward (+)
34579112 .. 34582531
3420 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45010.t2

Sequence Viewer

Length: 1026 bp
ATGGCAACACTCAACATAACCGCACCTCATAACCTCACAACCTCATTCAACACTCAACTCCACAGACCCAGTTCTGTTCCTGTCTTCTTGTCTGCCCGGACCTCCAGCAAACCCGGCCCGTTTAAGAAATGGGTCGTCTCGACCCGGAGAAAACGAAGGTTCAGTGTTGGGTCGGTGACAGAGGACAGAGAAGTGGTTGCTGAGCAAGAGAGCAGGGTGTTGGTTAATGGGTCTGAAGAGTTTGTGGGTCTTCAATCTAGTTCTGGAGGAAATGGAGATGGGGATGATTTGGACAAGTTGACCAGTAGAGCTATCAATGCTTTGATTGTTCTGGGGTTTGGGACTTTTGCTGTGTCTAAGCTGCTCACGATTGACCATGACTATTGGCATGGATGGACCCTTTACGAGATAGTGAAGTATGTACCTGAACACAATTGGATTGCCTATGAACAAGCTCTCAATGCAAACCCGGTTTTAGCCAAAATGGTGATAAGTGGGGTAGTCTATACTTTAGGAGATTGGATTGCGCAATGTTATGAAGGGAAGCCACTTTTGGAATTTGATAGAACACGCATGTTCAGATCAGGGCTTGTAGGGTTTTCCCTCCACGGATCTCTTTCTCATTATTATTACCAATTTTGTGAGGCTCTCTTTCCTTTGGAAGATTGGTGGGTGGTCCCGGCCAAAATAGCCTTTGACCAAACAGTGTGGGCGGCTATATGGAACAGCATCTATTTTGTGGCTTTGGGGCTCTTGCGTTTTGAGTCCCCAAACAAGATTTTTGATGAACTGAAGGCTACATTTCGACCCATGCTGACTGCAGGATGGAAACTTTGGCCATTTGCTCATCTAGTTACATATGGCCTGATTCCTCTTGAACAAAGGCTTCTTTGGGTGGACTGTGTGGAGCTGATTTGGGTTACTATTCTCTCAACATATTCAAATGAAAAGTCAGAGGCCACTATATTGGAGGTATCGTCTGGAGCAGATTCCACTTCTTCGTCAAGCAATTCACCTGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Mpv17_PMP22

Protein Analysis

342

Amino Acids

38.41

Weight (kDa)

5.66

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 250 - 311 3.3e-17 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03410 AT4G03410
fragaria_vesca FvH4_6g45010 FvH4_6g45010
malus_domestica MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis pycom09g01560 pycom17g07880
rosa_chinensis RchiOBHm_Chr2g0162331
rosa_laevigata RLG00000021338
rosa_multiflora Rmu_ssc0000346.1_g000001
rosa_roxburghii Rroxscaffold_2G00088020
rosa_rugosa Rorug02G0496400 Rorug02G0496500
rosa_samantha Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana Rw2G046580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 528
AciI CCGC 2 cut(s) 21, 713
AclWI GGATC 1 cut(s) 619
AcoI YGGCCR 2 cut(s) 681, 836
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 2 cut(s) 255, 812
AfaI GTAC 1 cut(s) 423
AgsI TTSAA 4 cut(s) 49, 254, 878, 942
AjuI GAANNNNNNNTTGG 2 cut(s) 536, 568
AluBI AGCT 4 cut(s) 311, 361, 455, 910
AluI AGCT 4 cut(s) 311, 361, 455, 910
Alw26I GTCTC 1 cut(s) 142
AlwI GGATC 1 cut(s) 619
AoxI GGCC 5 cut(s) 115, 681, 836, 862, 957
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 1 cut(s) 557
ArsI GACNNNNNNTTYG 2 cut(s) 935, 967
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 4 cut(s) 99, 116, 396, 676
AsuC2I CCSGG 5 cut(s) 97, 114, 145, 470, 680
AsuHPI GGTGA 3 cut(s) 187, 499, 1005
AvaII GGWCC 3 cut(s) 99, 396, 676
AxyI CCTNAGG 1 cut(s) 1017
BalI TGGCCA 1 cut(s) 838
BanII GRGCYC 1 cut(s) 753
BbsI GAAGAC 2 cut(s) 76, 242
BbvI GCAGC 1 cut(s) 348
BccI CCATC 3 cut(s) 272, 387, 819
BcnI CCSGG 5 cut(s) 97, 114, 145, 470, 680
BcoDI GTCTC 1 cut(s) 142
BfaI CTAG 3 cut(s) 258, 851, 1024
BfmI CTRYAG 1 cut(s) 819
BisI GCNGC 2 cut(s) 362, 714
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 2 cut(s) 363, 715
Bme1390I CCNGG 5 cut(s) 97, 114, 145, 470, 680
Bme18I GGWCC 3 cut(s) 99, 396, 676
BmgT120I GGNCC 4 cut(s) 99, 116, 396, 676
BmiI GGNNCC 2 cut(s) 398, 678
BmrFI CCNGG 5 cut(s) 97, 114, 145, 470, 680
BmrI ACTGGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 738
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 2 cut(s) 76, 242
BpmI CTGGAG 3 cut(s) 88, 285, 1002
Bpu1102I GCTNAGC 1 cut(s) 201
BpuMI CCSGG 5 cut(s) 97, 114, 145, 470, 680
BsaJI CCNNGG 1 cut(s) 607
BsaXI ACNNNNNCTCC 2 cut(s) 962, 992
Bse1I ACTGG 2 cut(s) 69, 303
Bse21I CCTNAGG 1 cut(s) 1017
Bse3DI GCAATG 1 cut(s) 536
BseDI CCNNGG 1 cut(s) 607
BseGI GGATG 3 cut(s) 289, 398, 830
BseMI GCAATG 1 cut(s) 536
BseMII CTCAG 2 cut(s) 192, 1008
BseNI ACTGG 2 cut(s) 69, 303
BseXI GCAGC 1 cut(s) 348
BshFI GGCC 5 cut(s) 117, 683, 838, 864, 959
BsiSI CCGG 5 cut(s) 97, 114, 145, 470, 680
BslFI GGGAC 3 cut(s) 355, 662, 751
BsmAI GTCTC 1 cut(s) 142
BsmBI CGTCTC 1 cut(s) 142
BsmFI GGGAC 3 cut(s) 355, 662, 751
BsnI GGCC 5 cut(s) 117, 683, 838, 864, 959
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 2 cut(s) 581, 611
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 2 cut(s) 21, 713
BspANI GGCC 5 cut(s) 117, 683, 838, 864, 959
BspCNI CTCAG 2 cut(s) 193, 1009
BspLI GGNNCC 2 cut(s) 398, 678
BspMAI CTGCAG 1 cut(s) 823
BspPI GGATC 1 cut(s) 619
BsrDI GCAATG 1 cut(s) 536
BsrI ACTGG 2 cut(s) 69, 303
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 2 cut(s) 581, 611
Bst4CI ACNGT 2 cut(s) 706, 902
Bst6I CTCTTC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 201, 357, 1017
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 3 cut(s) 289, 398, 830
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 2 cut(s) 584, 614
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 581, 611
BstMWI GCNNNNNNNGC 4 cut(s) 114, 317, 461, 689
BstNSI RCATGY 1 cut(s) 577
BstSCI CCNGG 5 cut(s) 95, 112, 143, 468, 678
BstSFI CTRYAG 1 cut(s) 819
BstV1I GCAGC 1 cut(s) 348
BstV2I GAAGAC 2 cut(s) 76, 242
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 1 cut(s) 967
BstYI RGATCY 1 cut(s) 611
Bsu36I CCTNAGG 1 cut(s) 1017
BsuRI GGCC 5 cut(s) 117, 683, 838, 864, 959
BtgI CCRYGG 1 cut(s) 607
BtsCI GGATG 3 cut(s) 289, 398, 830
BtsIMutI CAGTG 2 cut(s) 169, 711
CfoI GCGC 1 cut(s) 529
Cfr13I GGNCC 4 cut(s) 99, 116, 396, 676
Csp6I GTAC 1 cut(s) 422
CspCI CAANNNNNGTGG 2 cut(s) 689, 724
CviAII CATG 4 cut(s) 377, 389, 574, 811
CviQI GTAC 1 cut(s) 422
DdeI CTNAG 3 cut(s) 201, 357, 1017
DpnI GATC 2 cut(s) 583, 613
DpnII GATC 2 cut(s) 581, 611
EaeI YGGCCR 2 cut(s) 681, 836
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 753
Eco47I GGWCC 3 cut(s) 99, 396, 676
Eco57I CTGAAG 2 cut(s) 255, 812
Eco81I CCTNAGG 1 cut(s) 1017
EcoT38I GRGCYC 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 142
FaeI CATG 4 cut(s) 380, 392, 577, 814
FaqI GGGAC 3 cut(s) 355, 662, 751
FatI CATG 4 cut(s) 376, 388, 573, 810
FauNDI CATATG 1 cut(s) 859
Fnu4HI GCNGC 2 cut(s) 362, 714
FokI GGATG 3 cut(s) 296, 405, 837
FriOI GRGCYC 1 cut(s) 753
Fsp4HI GCNGC 2 cut(s) 362, 714
FspBI CTAG 3 cut(s) 258, 851, 1024
FspI TGCGCA 1 cut(s) 528
GlaI GCGC 1 cut(s) 528
GluI GCNGC 2 cut(s) 362, 714
GsuI CTGGAG 3 cut(s) 88, 285, 1002
HaeIII GGCC 5 cut(s) 117, 683, 838, 864, 959
HapII CCGG 5 cut(s) 97, 114, 145, 470, 680
HhaI GCGC 1 cut(s) 529
Hin1II CATG 4 cut(s) 380, 392, 577, 814
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 3 cut(s) 764, 868, 989
HpaII CCGG 5 cut(s) 97, 114, 145, 470, 680
HphI GGTGA 3 cut(s) 187, 499, 1005
Hpy166II GTNNAC 2 cut(s) 300, 898
Hpy188I TCNGA 3 cut(s) 235, 581, 955
Hpy188III TCNNGA 5 cut(s) 139, 264, 367, 875, 981
Hpy8I GTNNAC 2 cut(s) 300, 898
HpyAV CCTTC 3 cut(s) 150, 533, 787
HpyCH4III ACNGT 2 cut(s) 706, 902
HpyCH4V TGCA 2 cut(s) 464, 821
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 317, 461, 689
HpyF3I CTNAG 3 cut(s) 201, 357, 1017
Hsp92II CATG 4 cut(s) 380, 392, 577, 814
HspAI GCGC 1 cut(s) 527
Kzo9I GATC 2 cut(s) 581, 611
LmnI GCTCC 2 cut(s) 907, 983
Lsp1109I GCAGC 1 cut(s) 348
LweI GCATC 1 cut(s) 738
MaeI CTAG 3 cut(s) 258, 851, 1024
MaeIII GTNAC 3 cut(s) 175, 853, 919
MalI GATC 2 cut(s) 583, 613
MboI GATC 2 cut(s) 581, 611
MboII GAAGA 5 cut(s) 76, 242, 248, 674, 990
MfeI CAATTG 1 cut(s) 433
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 1 cut(s) 753
MlsI TGGCCA 1 cut(s) 838
MluCI AATT 4 cut(s) 433, 557, 635, 1009
MluNI TGGCCA 1 cut(s) 838
MlyI GAGTC 1 cut(s) 773
Mox20I TGGCCA 1 cut(s) 838
MscI TGGCCA 1 cut(s) 838
MseI TTAA 2 cut(s) 123, 225
Msp20I TGGCCA 1 cut(s) 838
MspI CCGG 5 cut(s) 97, 114, 145, 470, 680
MspR9I CCNGG 5 cut(s) 97, 114, 145, 470, 680
MunI CAATTG 1 cut(s) 433
MwoI GCNNNNNNNGC 4 cut(s) 114, 317, 461, 689
NciI CCSGG 5 cut(s) 97, 114, 145, 470, 680
NdeI CATATG 1 cut(s) 859
NdeII GATC 2 cut(s) 581, 611
NlaIII CATG 4 cut(s) 380, 392, 577, 814
NlaIV GGNNCC 2 cut(s) 398, 678
NmuCI GTSAC 1 cut(s) 175
NsbI TGCGCA 1 cut(s) 528
NspI RCATGY 1 cut(s) 577
PfeI GAWTC 2 cut(s) 868, 989
PkrI GCNGC 2 cut(s) 363, 715
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
PspN4I GGNNCC 2 cut(s) 398, 678
PspPI GGNCC 4 cut(s) 99, 116, 396, 676
PstI CTGCAG 1 cut(s) 823
PsuI RGATCY 1 cut(s) 611
RsaI GTAC 1 cut(s) 423
RsaNI GTAC 1 cut(s) 422
SaqAI TTAA 2 cut(s) 123, 225
SatI GCNGC 2 cut(s) 362, 714
Sau3AI GATC 2 cut(s) 581, 611
Sau96I GGNCC 4 cut(s) 99, 116, 396, 676
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 5 cut(s) 97, 114, 145, 470, 680
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 1 cut(s) 738
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 3 cut(s) 99, 396, 676
Sse9I AATT 4 cut(s) 433, 557, 635, 1009
SsiI CCGC 2 cut(s) 21, 713
SspMI CTAG 3 cut(s) 258, 851, 1024
StyD4I CCNGG 5 cut(s) 95, 112, 143, 468, 678
TaaI ACNGT 2 cut(s) 706, 902
TaqI TCGA 2 cut(s) 140, 805
TasI AATT 4 cut(s) 433, 557, 635, 1009
TauI GCSGC 1 cut(s) 716
TfiI GAWTC 2 cut(s) 868, 989
Tru1I TTAA 2 cut(s) 123, 225
Tru9I TTAA 2 cut(s) 123, 225
TscAI CASTG 2 cut(s) 169, 711
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 462, 552, 801, 960
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 2 cut(s) 169, 711
VpaK11BI GGWCC 3 cut(s) 99, 396, 676
XapI RAATTY 1 cut(s) 557
XceI RCATGY 1 cut(s) 577
XspI CTAG 3 cut(s) 258, 851, 1024
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.