Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0010816

Physical Location & Seq

Genomic Coordinates Forward (+)

23028461 .. 23031892

Gene Structure 3432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G234700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTACTCTTAACATAATCGCCGCTCATAAGCTCCCTTCACCCGCAAGCTCCTCTTTCGCTGCTCAATCTCAGAAACCCAACTTTCTTTCACTCTTCTGTACGCAAACCTTCAGCAAGCCCGACCCATCAAGGCTATTGGGCTTCTCGACCCGGAGAAAACGAAACTCGACTGTTGGGTCGGTCACAGAGGACAGAGAGGTGGTTCCATTGAAGGAAAAACATGCAGAGGACCAAGATAGCAGCTTATTGGTTAATGGGTCTGAAGAATTTGAGGCTGTTTCGTCATCATCGGCTTATTCTGAAGGCAGAGGAGAGGGGGATGATTTGGATAAGCTGACCAGTAGAGCTATTAATGCCTTAATTGTTCTGGGATTTGGGACCTTTGCGGTCTCTAAGTTGCTCACGATTGACCATGATTATTGGCATGGGTGGACCCTTTATGAGATACTAAGATATGTACCTGAACATAATTGGATTGCATATGAACAAGCTCTCAAAGCAAATCCTGTTTTAGCCAAAATGATGATAAGTGGGGTTGTCTATACTCTAGGAGATTGGATTGCCCAGTGTTATGAAGGGAAGCCTCTTCTTGAATTTGACCGGAAACGCATGTTCAGATCAGGCCTTGTTGGGTTTACTTTCCATGGATCCCTTTCTCATTATTACTATCAATTTTGTGAGGCTCTTTTTCCTTTGGAGGATTGGTGGGTGGTCCCTGCTAAAATAGCCTTTGACCAAACAGTGTGGGCGGCAATTTGGAACAGCATCTATTTTGTGGTTTTGGGGTTCTTGCGTTTAGAGTCCCCAACCAAGATTTTTGATGAACTGAAGGCTACATTTCGGCCTATGCTGACAGCAGGATGGAAACTCTGGCCATTTGCTCATCTGGTTACCTATGGGCTGATCCCTGTTGAACAAAGGCTTCTTTGGGTGGACTGCGTAGAGCTTATTTGGGTTACTATTCTCTCAACTTATTCAAATGAGAAGTCAGAGTCCAGTATATCTGAGGCATCATCTGGAGCAGATTCTGCATCTTCGTCAAGCAGTTCTCCTAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

355

Amino Acids

39.79

Weight (kDa)

5.56

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03410 AT4G03410
fragaria_vesca	FvH4_6g45010 FvH4_6g45010
malus_domestica	MD09G1090700.v1.1 MD17G1080100.v1.1
prunus_persica	Prupe.3G234700_v2.0.a1 Prupe.3G234700_v2.0.a1
pyrus_communis	pycom09g01560 pycom17g07880
rosa_chinensis	RchiOBHm_Chr2g0162331
rosa_laevigata	RLG00000021338
rosa_multiflora	Rmu_ssc0000346.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088020
rosa_rugosa	Rorug02G0496400 Rorug02G0496500
rosa_samantha	Rh2AG562700 Rh2BG575500 Rh2CG545900
rosa_wichuraiana	Rw2G046580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	178
AccBSI	CCGCTC	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 45, 389, 752
AclWI	GGATC	3 cut(s)	645, 658, 901
AcoI	YGGCCR	1 cut(s)	875
AcsI	RAATTY	2 cut(s)	269, 596
AcuI	CTGAAG	4 cut(s)	97, 285, 324, 851
AfaI	GTAC	2 cut(s)	103, 462
AgsI	TTSAA	4 cut(s)	214, 596, 917, 981
AluBI	AGCT	7 cut(s)	34, 51, 246, 337, 350, 494, 949
AluI	AGCT	7 cut(s)	34, 51, 246, 337, 350, 494, 949
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	3 cut(s)	645, 658, 901
AlwNI	CAGNNNCTG	1 cut(s)	1031
AoxI	GGCC	3 cut(s)	625, 845, 875
ApeKI	GCWGC	2 cut(s)	62, 243
ApoI	RAATTY	2 cut(s)	269, 596
ArsI	GACNNNNNNTTYG	2 cut(s)	974, 1006
AseI	ATTAAT	1 cut(s)	354
AspS9I	GGNCC	4 cut(s)	232, 381, 435, 715
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	33
AvaII	GGWCC	4 cut(s)	232, 381, 435, 715
AxyI	CCTNAGG	1 cut(s)	1056
BalI	TGGCCA	1 cut(s)	877
BamHI	GGATCC	1 cut(s)	650
BbvI	GCAGC	2 cut(s)	49, 255
BccI	CCATC	2 cut(s)	136, 858
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	551
BisI	GCNGC	4 cut(s)	24, 63, 244, 753
BlsI	GCNGC	4 cut(s)	25, 64, 245, 754
Bme1390I	CCNGG	1 cut(s)	154
Bme18I	GGWCC	4 cut(s)	232, 381, 435, 715
BmgT120I	GGNCC	4 cut(s)	232, 381, 435, 715
BmiI	GGNNCC	5 cut(s)	207, 382, 437, 652, 717
BmrFI	CCNGG	1 cut(s)	154
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	3 cut(s)	777, 1022, 1043
BmuI	ACTGGG	1 cut(s)	562
BpmI	CTGGAG	1 cut(s)	1041
BpuMI	CCSGG	1 cut(s)	154
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	646
BsaWI	WCCGGW	1 cut(s)	603
BsaXI	ACNNNNNCTCC	2 cut(s)	692, 722
Bse1I	ACTGG	3 cut(s)	342, 568, 999
Bse21I	CCTNAGG	1 cut(s)	1056
BseDI	CCNNGG	1 cut(s)	646
BseGI	GGATG	2 cut(s)	328, 869
BseMII	CTCAG	2 cut(s)	86, 999
BseNI	ACTGG	3 cut(s)	342, 568, 999
BseRI	GAGGAG	2 cut(s)	43, 327
BseXI	GCAGC	2 cut(s)	49, 255
BshFI	GGCC	3 cut(s)	627, 847, 877
BsiSI	CCGG	2 cut(s)	154, 604
BslFI	GGGAC	3 cut(s)	394, 701, 790
BsmAI	GTCTC	1 cut(s)	397
BsmFI	GGGAC	3 cut(s)	394, 701, 790
BsnI	GGCC	3 cut(s)	627, 847, 877
Bso31I	GGTCTC	1 cut(s)	397
Bsp143I	GATC	3 cut(s)	620, 650, 906
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	4 cut(s)	24, 45, 389, 752
BspANI	GGCC	3 cut(s)	627, 847, 877
BspCNI	CTCAG	2 cut(s)	85, 1000
BspLI	GGNNCC	5 cut(s)	207, 382, 437, 652, 717
BspPI	GGATC	3 cut(s)	645, 658, 901
BspTNI	GGTCTC	1 cut(s)	397
BsrBI	CCGCTC	1 cut(s)	26
BsrI	ACTGG	3 cut(s)	342, 568, 999
BssECI	CCNNGG	1 cut(s)	646
BssMI	GATC	3 cut(s)	620, 650, 906
BssT1I	CCWWGG	1 cut(s)	646
Bst4CI	ACNGT	2 cut(s)	175, 745
Bst6I	CTCTTC	2 cut(s)	101, 594
BstAPI	GCANNNNNTGC	1 cut(s)	1031
BstC8I	GCNNGC	2 cut(s)	49, 119
BstDEI	CTNAG	5 cut(s)	72, 396, 452, 1008, 1056
BstDSI	CCRYGG	1 cut(s)	646
BstEII	GGTNACC	1 cut(s)	892
BstF5I	GGATG	2 cut(s)	328, 869
BstKTI	GATC	3 cut(s)	623, 653, 909
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	620, 650, 906
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 500, 728, 1031
BstNSI	RCATGY	2 cut(s)	227, 616
BstPI	GGTNACC	1 cut(s)	892
BstSCI	CCNGG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	49, 255
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
Bsu36I	CCTNAGG	1 cut(s)	1056
BsuRI	GGCC	3 cut(s)	627, 847, 877
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	2 cut(s)	328, 869
BtsIMutI	CAGTG	2 cut(s)	575, 750
Cac8I	GCNNGC	2 cut(s)	49, 119
CaiI	CAGNNNCTG	1 cut(s)	1031
Cfr13I	GGNCC	4 cut(s)	232, 381, 435, 715
Csp6I	GTAC	2 cut(s)	102, 461
CspCI	CAANNNNNGTGG	2 cut(s)	728, 763
CviAII	CATG	5 cut(s)	224, 416, 428, 613, 647
CviQI	GTAC	2 cut(s)	102, 461
DdeI	CTNAG	5 cut(s)	72, 396, 452, 1008, 1056
DpnI	GATC	3 cut(s)	622, 652, 908
DpnII	GATC	3 cut(s)	620, 650, 906
DrdI	GACNNNNNNGTC	1 cut(s)	178
DseDI	GACNNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	875
Eam1104I	CTCTTC	2 cut(s)	101, 594
EarI	CTCTTC	2 cut(s)	101, 594
Eco130I	CCWWGG	1 cut(s)	646
Eco147I	AGGCCT	1 cut(s)	627
Eco31I	GGTCTC	1 cut(s)	397
Eco47I	GGWCC	4 cut(s)	232, 381, 435, 715
Eco57I	CTGAAG	4 cut(s)	97, 285, 324, 851
Eco81I	CCTNAGG	1 cut(s)	1056
Eco91I	GGTNACC	1 cut(s)	892
EcoO109I	RGGNCCY	1 cut(s)	381
EcoO65I	GGTNACC	1 cut(s)	892
EcoT14I	CCWWGG	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	5 cut(s)	227, 419, 431, 616, 650
FalI	AAGNNNNNCTT	2 cut(s)	40, 72
FaqI	GGGAC	3 cut(s)	394, 701, 790
FatI	CATG	5 cut(s)	223, 415, 427, 612, 646
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	484
Fnu4HI	GCNGC	4 cut(s)	24, 63, 244, 753
FokI	GGATG	2 cut(s)	335, 876
Fsp4HI	GCNGC	4 cut(s)	24, 63, 244, 753
FspBI	CTAG	1 cut(s)	551
GluI	GCNGC	4 cut(s)	24, 63, 244, 753
GsuI	CTGGAG	1 cut(s)	1041
HaeIII	GGCC	3 cut(s)	627, 847, 877
HapII	CCGG	2 cut(s)	154, 604
Hin1II	CATG	5 cut(s)	227, 419, 431, 616, 650
HinfI	GANTC	3 cut(s)	803, 995, 1028
HpaII	CCGG	2 cut(s)	154, 604
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	3 cut(s)	435, 639, 937
Hpy188I	TCNGA	6 cut(s)	75, 265, 304, 620, 994, 1009
Hpy188III	TCNNGA	4 cut(s)	148, 406, 593, 1020
Hpy8I	GTNNAC	3 cut(s)	435, 639, 937
HpyAV	CCTTC	6 cut(s)	48, 121, 208, 299, 572, 826
HpyCH4III	ACNGT	2 cut(s)	175, 745
HpyCH4V	TGCA	3 cut(s)	227, 482, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 500, 728, 1031
HpyF3I	CTNAG	5 cut(s)	72, 396, 452, 1008, 1056
Hsp92II	CATG	5 cut(s)	227, 419, 431, 616, 650
Kzo9I	GATC	3 cut(s)	620, 650, 906
LmnI	GCTCC	3 cut(s)	39, 56, 1022
Lsp1109I	GCAGC	2 cut(s)	49, 255
LweI	GCATC	3 cut(s)	777, 1022, 1043
MaeI	CTAG	1 cut(s)	551
MaeIII	GTNAC	3 cut(s)	184, 892, 958
MalI	GATC	3 cut(s)	622, 652, 908
MbiI	CCGCTC	1 cut(s)	26
MboI	GATC	3 cut(s)	620, 650, 906
MboII	GAAGA	4 cut(s)	88, 278, 581, 1029
MflI	RGATCY	1 cut(s)	650
MlsI	TGGCCA	1 cut(s)	877
MluCI	AATT	6 cut(s)	269, 363, 472, 596, 674, 756
MluNI	TGGCCA	1 cut(s)	877
MlyI	GAGTC	2 cut(s)	812, 1004
Mox20I	TGGCCA	1 cut(s)	877
MscI	TGGCCA	1 cut(s)	877
MseI	TTAA	4 cut(s)	12, 255, 354, 362
Msp20I	TGGCCA	1 cut(s)	877
MspI	CCGG	2 cut(s)	154, 604
MspR9I	CCNGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	4 cut(s)	356, 500, 728, 1031
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	646
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	3 cut(s)	620, 650, 906
NlaIII	CATG	5 cut(s)	227, 419, 431, 616, 650
NlaIV	GGNNCC	5 cut(s)	207, 382, 437, 652, 717
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	2 cut(s)	227, 616
PceI	AGGCCT	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	1028
PkrI	GCNGC	4 cut(s)	25, 64, 245, 754
PleI	GAGTC	2 cut(s)	811, 1003
PpsI	GAGTC	2 cut(s)	811, 1003
PpuMI	RGGWCCY	1 cut(s)	381
PshBI	ATTAAT	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	381
PspEI	GGTNACC	1 cut(s)	892
PspN4I	GGNNCC	5 cut(s)	207, 382, 437, 652, 717
PspPI	GGNCC	4 cut(s)	232, 381, 435, 715
PspPPI	RGGWCCY	1 cut(s)	381
PstNI	CAGNNNCTG	1 cut(s)	1031
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	2 cut(s)	103, 462
RsaNI	GTAC	2 cut(s)	102, 461
SaqAI	TTAA	4 cut(s)	12, 255, 354, 362
SatI	GCNGC	4 cut(s)	24, 63, 244, 753
Sau3AI	GATC	3 cut(s)	620, 650, 906
Sau96I	GGNCC	4 cut(s)	232, 381, 435, 715
SchI	GAGTC	2 cut(s)	812, 1004
ScrFI	CCNGG	1 cut(s)	154
SfaNI	GCATC	3 cut(s)	777, 1022, 1043
SinI	GGWCC	4 cut(s)	232, 381, 435, 715
Sse9I	AATT	6 cut(s)	269, 363, 472, 596, 674, 756
SseBI	AGGCCT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	24, 45, 389, 752
SspMI	CTAG	1 cut(s)	551
StuI	AGGCCT	1 cut(s)	627
StyD4I	CCNGG	1 cut(s)	152
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	2 cut(s)	175, 745
TaqI	TCGA	2 cut(s)	149, 170
TaqII	GACCGA	1 cut(s)	172
TasI	AATT	6 cut(s)	269, 363, 472, 596, 674, 756
TauI	GCSGC	2 cut(s)	26, 755
TfiI	GAWTC	1 cut(s)	1028
Tru1I	TTAA	4 cut(s)	12, 255, 354, 362
Tru9I	TTAA	4 cut(s)	12, 255, 354, 362
TscAI	CASTG	2 cut(s)	575, 750
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	2 cut(s)	62, 243
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	3 cut(s)	501, 591, 840
TspRI	CASTG	2 cut(s)	575, 750
VpaK11BI	GGWCC	4 cut(s)	232, 381, 435, 715
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	2 cut(s)	269, 596
XceI	RCATGY	2 cut(s)	227, 616
XspI	CTAG	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.