AT4G04025

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011981
Physical Location & Seq
Reverse (-)
1934009 .. 1934635
627 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04025.1

Sequence Viewer

Length: 531 bp
ATGAAACTCATAAACAGAGCAGAAGAAAAAGCAGAGAAGCATAACAAACAATCACAACACCAAACAAAAGAAGCAAGAGTCTGCAGAGCTTTGTGTTGCAGCAACAAAGCAAGACTCAGCATTTCTTCTTCTTCCTCGGTGGAAGCAGACAAGAGTTCAAGATTTTCAGACCATCACGGTTCGCTCTCTAGTCTAGCACACTACATGGTTCAGGAGAAGCTAGAGCAGATGATCAGAGAGACACAAGAAGCCACACATCAAGAGAAGATAAGACAACAAAAGATGAGAAGAAGAAGAAGAAGAAGTGAGGGTAGTATCAGTAGCACTAAGTTCATTGTCATGATGGCGATGGAGAAATGTTCTTTTGATCCAAGAAAGGATTTTAGAGACTCTATGGTTGAGATGATTGTAGCAAACAAGATCAAAGAAGCAGATGAACTTAGAAGCCTCTTGGAGTACTATCTATCGATGAATCCTCGCGAATATCGGTCTGCCATTCTCGAGATCTTTTACGAGATACCTGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

176

Amino Acids

20.64

Weight (kDa)

9.41

Isoelectric Point (pI)

68.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 121 - 173 2.1e-19 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 480
AclWI GGATC 1 cut(s) 362
AfaI GTAC 1 cut(s) 458
AgsI TTSAA 1 cut(s) 159
AjnI CCWGG 1 cut(s) 520
AluBI AGCT 2 cut(s) 89, 220
AluI AGCT 2 cut(s) 89, 220
Alw26I GTCTC 2 cut(s) 233, 381
AlwI GGATC 1 cut(s) 362
Ama87I CYCGRG 1 cut(s) 500
ApeKI GCWGC 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 500
BbvI GCAGC 1 cut(s) 111
BccI CCATC 3 cut(s) 180, 337, 343
BciT130I CCWGG 1 cut(s) 522
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 233, 381
BfaI CTAG 3 cut(s) 189, 194, 221
BfmI CTRYAG 1 cut(s) 82
BglII AGATCT 1 cut(s) 504
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
BmcAI AGTACT 1 cut(s) 458
Bme1390I CCNGG 1 cut(s) 522
BmeT110I CYCGRG 1 cut(s) 500
BmrFI CCNGG 1 cut(s) 522
Bsa29I ATCGAT 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 135
BseBI CCWGG 1 cut(s) 522
BseCI ATCGAT 1 cut(s) 467
BseDI CCNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 111
Bsh1236I CGCG 1 cut(s) 480
BshVI ATCGAT 1 cut(s) 467
BsiHKCI CYCGRG 1 cut(s) 500
BsmAI GTCTC 2 cut(s) 233, 381
BsoBI CYCGRG 1 cut(s) 500
Bsp143I GATC 4 cut(s) 231, 367, 420, 504
Bsp68I TCGCGA 1 cut(s) 480
BspCNI CTCAG 1 cut(s) 129
BspDI ATCGAT 1 cut(s) 467
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 86
BspPI GGATC 1 cut(s) 362
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 4 cut(s) 231, 367, 420, 504
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 1 cut(s) 179
BstDEI CTNAG 3 cut(s) 116, 327, 440
BstFNI CGCG 1 cut(s) 480
BstKTI GATC 4 cut(s) 234, 370, 423, 507
BstMAI GTCTC 2 cut(s) 233, 381
BstMBI GATC 4 cut(s) 231, 367, 420, 504
BstNI CCWGG 1 cut(s) 522
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 1 cut(s) 82
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 504
BstYI RGATCY 1 cut(s) 504
Bsu15I ATCGAT 1 cut(s) 467
BsuTUI ATCGAT 1 cut(s) 467
BtgZI GCGATG 1 cut(s) 362
BtuMI TCGCGA 1 cut(s) 480
CciI TCATGA 1 cut(s) 339
ClaI ATCGAT 1 cut(s) 467
CsiI ACCWGGT 1 cut(s) 520
Csp6I GTAC 1 cut(s) 457
CviAII CATG 2 cut(s) 205, 340
CviJI RGCY 4 cut(s) 89, 220, 251, 447
CviKI_1 RGCY 4 cut(s) 89, 220, 251, 447
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 3 cut(s) 116, 327, 440
DpnI GATC 4 cut(s) 233, 369, 422, 506
DpnII GATC 4 cut(s) 231, 367, 420, 504
Eco88I CYCGRG 1 cut(s) 500
EcoRII CCWGG 1 cut(s) 520
FaeI CATG 2 cut(s) 208, 343
FaiI YATR 5 cut(s) 11, 42, 206, 341, 395
FatI CATG 2 cut(s) 204, 339
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 100
Fsp4HI GCNGC 1 cut(s) 100
FspBI CTAG 3 cut(s) 189, 194, 221
GluI GCNGC 1 cut(s) 100
Hin1II CATG 2 cut(s) 208, 343
HinfI GANTC 4 cut(s) 78, 114, 389, 472
Hpy188I TCNGA 2 cut(s) 169, 236
Hpy188III TCNNGA 7 cut(s) 159, 212, 260, 340, 479, 500, 502
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 2 cut(s) 84, 99
HpyF3I CTNAG 3 cut(s) 116, 327, 440
Hsp92II CATG 2 cut(s) 208, 343
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 4 cut(s) 231, 367, 420, 504
LpnPI CCDG 2 cut(s) 197, 507
Lsp1109I GCAGC 1 cut(s) 111
MabI ACCWGGT 1 cut(s) 520
MaeI CTAG 3 cut(s) 189, 194, 221
MalI GATC 4 cut(s) 233, 369, 422, 506
MboI GATC 4 cut(s) 231, 367, 420, 504
MflI RGATCY 1 cut(s) 504
MlyI GAGTC 3 cut(s) 87, 108, 383
MnlI CCTC 4 cut(s) 145, 301, 458, 486
MslI CAYNNNNRTG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
MvnI CGCG 1 cut(s) 480
NdeII GATC 4 cut(s) 231, 367, 420, 504
NlaIII CATG 2 cut(s) 208, 343
NruI TCGCGA 1 cut(s) 480
PaeR7I CTCGAG 1 cut(s) 500
PagI TCATGA 1 cut(s) 339
PfeI GAWTC 1 cut(s) 472
PkrI GCNGC 1 cut(s) 101
PleI GAGTC 3 cut(s) 86, 108, 383
PpsI GAGTC 3 cut(s) 86, 108, 383
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PstI CTGCAG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 504
RruI TCGCGA 1 cut(s) 480
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 338
SatI GCNGC 1 cut(s) 100
Sau3AI GATC 4 cut(s) 231, 367, 420, 504
ScaI AGTACT 1 cut(s) 458
SchI GAGTC 3 cut(s) 87, 108, 383
ScrFI CCNGG 1 cut(s) 522
SetI ASST 3 cut(s) 91, 222, 523
SexAI ACCWGGT 1 cut(s) 520
SfcI CTRYAG 1 cut(s) 82
Sfr274I CTCGAG 1 cut(s) 500
SlaI CTCGAG 1 cut(s) 500
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
SspMI CTAG 3 cut(s) 189, 194, 221
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 2 cut(s) 467, 501
TaqII GACCGA 1 cut(s) 477
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 1 cut(s) 472
TseI GCWGC 1 cut(s) 99
TspDTI ATGAA 4 cut(s) 17, 322, 450, 485
XhoI CTCGAG 1 cut(s) 500
XspI CTAG 3 cut(s) 189, 194, 221
ZrmI AGTACT 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.