MD05G1352900.v1.1

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011981
Physical Location & Seq
Forward (+)
46937338 .. 46937844
507 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1352900.v1.1.491

Sequence Viewer

Length: 507 bp
ATGTCCAAAACGAAAGCGTCCTCCAAGAAGCAACAAAGAATATGCAAGGCATTGTGCTGCAGCGGCTGCCGGCTTAGCGTGTCTTCGTCTAGCTCGGAGGAAGTAGCCAGCTCTAGTTCCGATAGGTACCCTTCAATATCAAGCCTATCGCATGCCATGGTTCAAGAGAGACTCGACCAGATGATCAGGGAAGGGCAGGAGGGCTTGAGGCACGTTGATCATCGGAGAAGAAAGCAGCGAGCTGGTGATGATCATGATCAACTTCAAGCAGGAGGAGGGACTAAATTTGTTGTAATGGTTGCGATGGAGATGTGTTCTTATGATCCGAGGGAGGATTTCAGGGAGTCCCTGGTGGCGATGATAGTGGCAAACCGAATACAAGAGCCGAAAGATCTTCGTAGCCTCTTGAATTATTATGTTTCGATGAATTCAGATGAGTATCGTGGGCTTATACTCGAGGTGTTTCATGAAGTTTGCTCTGATTTTTTCTTATGTAAATTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

169

Amino Acids

19.14

Weight (kDa)

7.62

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 106 - 162 9.6e-20 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AciI CCGC 1 cut(s) 63
AclWI GGATC 1 cut(s) 317
AcsI RAATTY 3 cut(s) 284, 427, 497
AfaI GTAC 1 cut(s) 128
AgsI TTSAA 4 cut(s) 135, 164, 266, 409
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 3 cut(s) 93, 111, 242
AluI AGCT 3 cut(s) 93, 111, 242
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 1 cut(s) 317
AlwNI CAGNNNCTG 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 455
ApeKI GCWGC 4 cut(s) 57, 60, 66, 235
ApoI RAATTY 3 cut(s) 284, 427, 497
Asp718I GGTACC 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 455
BanI GGYRCC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 44, 53, 72, 247
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 4 cut(s) 183, 217, 250, 256
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 2 cut(s) 90, 114
BfmI CTRYAG 1 cut(s) 58
BglII AGATCT 1 cut(s) 391
BisI GCNGC 5 cut(s) 58, 61, 64, 67, 236
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 5 cut(s) 59, 62, 65, 68, 237
Bme1390I CCNGG 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 350
BpiI GAAGAC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 226
BsaBI GATNNNNATC 2 cut(s) 255, 438
BsaJI CCNNGG 3 cut(s) 156, 326, 348
Bse118I RCCGGY 1 cut(s) 69
Bse8I GATNNNNATC 2 cut(s) 255, 438
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 156, 326, 348
BseJI GATNNNNATC 2 cut(s) 255, 438
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 4 cut(s) 44, 53, 72, 247
BshNI GGYRCC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 1 cut(s) 70
BslFI GGGAC 2 cut(s) 292, 331
BsmAI GTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 292, 331
BsoBI CYCGRG 1 cut(s) 455
Bsp143I GATC 6 cut(s) 183, 217, 250, 256, 322, 391
Bsp1720I GCTNAGC 1 cut(s) 74
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 63
BspHI TCATGA 2 cut(s) 253, 466
BspLI GGNNCC 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 62
BspPI GGATC 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 3 cut(s) 156, 326, 348
BssMI GATC 6 cut(s) 183, 217, 250, 256, 322, 391
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 66
BstC8I GCNNGC 4 cut(s) 71, 109, 153, 240
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 156
BstKTI GATC 6 cut(s) 186, 220, 253, 259, 325, 394
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 6 cut(s) 183, 217, 250, 256, 322, 391
BstMWI GCNNNNNNNGC 3 cut(s) 63, 66, 75
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 4 cut(s) 44, 53, 72, 247
BstV2I GAAGAC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 156
BtgZI GCGATG 2 cut(s) 317, 371
Cac8I GCNNGC 4 cut(s) 71, 109, 153, 240
CaiI CAGNNNCTG 1 cut(s) 66
CciI TCATGA 2 cut(s) 253, 466
Cfr10I RCCGGY 1 cut(s) 69
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 127
CviAII CATG 4 cut(s) 152, 157, 254, 467
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 1 cut(s) 74
DpnI GATC 6 cut(s) 185, 219, 252, 258, 324, 393
DpnII GATC 6 cut(s) 183, 217, 250, 256, 322, 391
Eco130I CCWWGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 4 cut(s) 155, 160, 257, 470
FaiI YATR 9 cut(s) 43, 153, 158, 255, 321, 417, 452, 468, 493
FaqI GGGAC 2 cut(s) 292, 331
FatI CATG 4 cut(s) 151, 156, 253, 466
FbaI TGATCA 4 cut(s) 183, 217, 250, 256
Fnu4HI GCNGC 5 cut(s) 58, 61, 64, 67, 236
Fsp4HI GCNGC 5 cut(s) 58, 61, 64, 67, 236
FspBI CTAG 2 cut(s) 90, 114
GluI GCNGC 5 cut(s) 58, 61, 64, 67, 236
HapII CCGG 1 cut(s) 70
HgaI GACGC 1 cut(s) 6
Hin1II CATG 4 cut(s) 155, 160, 257, 470
HinfI GANTC 2 cut(s) 171, 344
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 257
Hpy188I TCNGA 6 cut(s) 97, 121, 225, 327, 433, 481
Hpy188III TCNNGA 4 cut(s) 164, 254, 406, 467
HpyAV CCTTC 2 cut(s) 141, 185
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 45, 60
HpyF10VI GCNNNNNNNGC 3 cut(s) 63, 66, 75
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 4 cut(s) 155, 160, 257, 470
KpnI GGTACC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 69
KroNI GCCGGC 1 cut(s) 71
Ksp22I TGATCA 4 cut(s) 183, 217, 250, 256
Kzo9I GATC 6 cut(s) 183, 217, 250, 256, 322, 391
Lsp1109I GCAGC 4 cut(s) 44, 53, 72, 247
MaeI CTAG 2 cut(s) 90, 114
MaeII ACGT 1 cut(s) 213
MalI GATC 6 cut(s) 185, 219, 252, 258, 324, 393
MboI GATC 6 cut(s) 183, 217, 250, 256, 322, 391
MboII GAAGA 3 cut(s) 75, 240, 386
MflI RGATCY 1 cut(s) 391
MluCI AATT 4 cut(s) 284, 409, 427, 497
MlyI GAGTC 2 cut(s) 165, 353
MroNI GCCGGC 1 cut(s) 69
MseI TTAA 1 cut(s) 505
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 63, 66, 75
NaeI GCCGGC 1 cut(s) 71
NcoI CCATGG 1 cut(s) 156
NdeII GATC 6 cut(s) 183, 217, 250, 256, 322, 391
NgoMIV GCCGGC 1 cut(s) 69
NlaIII CATG 4 cut(s) 155, 160, 257, 470
NlaIV GGNNCC 1 cut(s) 128
NspI RCATGY 1 cut(s) 155
PaeI GCATGC 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 455
PagI TCATGA 2 cut(s) 253, 466
PdiI GCCGGC 1 cut(s) 71
PkrI GCNGC 5 cut(s) 59, 62, 65, 68, 237
PleI GAGTC 2 cut(s) 165, 352
PpsI GAGTC 2 cut(s) 165, 352
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 128
PspXI VCTCGAGB 1 cut(s) 455
PstI CTGCAG 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 505
SatI GCNGC 5 cut(s) 58, 61, 64, 67, 236
Sau3AI GATC 6 cut(s) 183, 217, 250, 256, 322, 391
SchI GAGTC 2 cut(s) 165, 353
ScrFI CCNGG 1 cut(s) 350
SetI ASST 6 cut(s) 95, 113, 128, 216, 244, 462
SfcI CTRYAG 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 455
SlaI CTCGAG 1 cut(s) 455
SmlI CTYRAG 2 cut(s) 205, 455
SmoI CTYRAG 2 cut(s) 205, 455
SphI GCATGC 1 cut(s) 155
Sse9I AATT 4 cut(s) 284, 409, 427, 497
SsiI CCGC 1 cut(s) 63
SspMI CTAG 2 cut(s) 90, 114
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 156
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 174, 422, 456
TasI AATT 4 cut(s) 284, 409, 427, 497
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 1 cut(s) 505
Tru9I TTAA 1 cut(s) 505
TseI GCWGC 4 cut(s) 57, 60, 66, 235
TspDTI ATGAA 3 cut(s) 440, 455, 483
XapI RAATTY 3 cut(s) 284, 427, 497
XceI RCATGY 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 455
XspI CTAG 2 cut(s) 90, 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.