Prupe.4G014500_v2.0.a1

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011981
Physical Location & Seq
Reverse (-)
669651 .. 670175
525 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G014500.1

Sequence Viewer

Length: 525 bp
ATGAAAGCCTCCTCCAGTTCCAGGCAGCAGCAGAGCAAGAAGCAAGTCCAGCTTCAGCAGAGAGCATGCAGGGCTCTGTGTTGCAGCTGCAGGCTTAGCGTGTCTTCATCGAATTCAGAGGAGGTAGAGAGCTCAAGCTCTGATAGGTACCCTTCCATATCAAGCCTGTCACATGCCATGGTTCAAGAGAGATTGGACCAAATGATTAGAGAGAGGCAGGAGGCCTCAAGACATGTAGATTGTCAGAAAAGAAAGCAGAGAGCAGGTGATCATCATCAACTTCAAGCAGGAGGAGGAACTAAATTCATTGTGATGGTTGCCATGGAAAAGTGCTCTTACGATCCAAGAGAGGATTTCAGGCAGTCCATGGCGGAGATGATAATGGCGAACCGGATTGAAGAGCCCAAAGATCTTCGCAGCCTCTTGAATTATTATGTTTCCATGAATTCGGAGGAGTATCATGGGATTATACTGGAGGTGTTTCATGAAGTTTGCTCTGATTTATTCTTCTGTAAATTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

175

Amino Acids

20.1

Weight (kDa)

7.61

Isoelectric Point (pI)

70.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
Acc36I ACCTGC 1 cut(s) 254
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 147
AciI CCGC 1 cut(s) 371
AclWI GGATC 1 cut(s) 335
AcsI RAATTY 4 cut(s) 112, 302, 445, 515
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 21
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 4 cut(s) 185, 284, 398, 427
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 4 cut(s) 52, 87, 132, 138
AluI AGCT 4 cut(s) 52, 87, 132, 138
Alw21I GWGCWC 2 cut(s) 134, 335
AlwI GGATC 1 cut(s) 335
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 5 cut(s) 25, 28, 84, 87, 417
ApoI RAATTY 4 cut(s) 112, 302, 445, 515
Asp718I GGTACC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 278
AvaII GGWCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 147
BanII GRGCYC 3 cut(s) 76, 134, 405
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 2 cut(s) 134, 335
BbvI GCAGC 5 cut(s) 37, 40, 74, 96, 429
BccI CCATC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 22
BclI TGATCA 1 cut(s) 268
BfmI CTRYAG 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 254
BglII AGATCT 1 cut(s) 409
BisI GCNGC 5 cut(s) 26, 29, 85, 88, 418
BlpI GCTNAGC 1 cut(s) 95
BlsI GCNGC 5 cut(s) 27, 30, 86, 89, 419
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 494
Bpu1102I GCTNAGC 1 cut(s) 95
BpuEI CTTGAG 2 cut(s) 118, 211
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 177, 321, 366
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse1I ACTGG 2 cut(s) 15, 477
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 3 cut(s) 177, 321, 366
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 21
BseNI ACTGG 2 cut(s) 15, 477
BseRI GAGGAG 3 cut(s) 134, 306, 467
BseXI GCAGC 5 cut(s) 37, 40, 74, 96, 429
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 134, 335
BsiSI CCGG 1 cut(s) 391
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 4 cut(s) 76, 134, 335, 405
Bsp143I GATC 3 cut(s) 268, 340, 409
Bsp1720I GCTNAGC 1 cut(s) 95
Bsp19I CCATGG 3 cut(s) 177, 321, 366
BspACI CCGC 1 cut(s) 371
BspANI GGCC 1 cut(s) 224
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 92
BspMI ACCTGC 1 cut(s) 254
BspPI GGATC 1 cut(s) 335
BspQI GCTCTTC 1 cut(s) 393
BspT107I GGYRCC 1 cut(s) 147
BsrI ACTGG 2 cut(s) 15, 477
BssECI CCNNGG 3 cut(s) 177, 321, 366
BssMI GATC 3 cut(s) 268, 340, 409
BssT1I CCWWGG 3 cut(s) 177, 321, 366
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 2 cut(s) 67, 92
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 3 cut(s) 177, 321, 366
BstKTI GATC 3 cut(s) 271, 343, 412
BstMBI GATC 3 cut(s) 268, 340, 409
BstMWI GCNNNNNNNGC 3 cut(s) 49, 71, 96
BstNI CCWGG 1 cut(s) 22
BstNSI RCATGY 3 cut(s) 69, 176, 236
BstSCI CCNGG 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 88
BstV1I GCAGC 5 cut(s) 37, 40, 74, 96, 429
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 3 cut(s) 177, 321, 366
BveI ACCTGC 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 67, 92
CciI TCATGA 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 148
CviAII CATG 9 cut(s) 66, 173, 178, 233, 322, 367, 442, 461, 485
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 95
DpnI GATC 3 cut(s) 270, 342, 411
DpnII GATC 3 cut(s) 268, 340, 409
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 132
Eco130I CCWWGG 3 cut(s) 177, 321, 366
Eco147I AGGCCT 1 cut(s) 224
Eco24I GRGCYC 3 cut(s) 76, 134, 405
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 132
EcoRI GAATTC 2 cut(s) 112, 445
EcoRII CCWGG 1 cut(s) 20
EcoT14I CCWWGG 3 cut(s) 177, 321, 366
EcoT38I GRGCYC 3 cut(s) 76, 134, 405
ErhI CCWWGG 3 cut(s) 177, 321, 366
FaeI CATG 9 cut(s) 69, 176, 181, 236, 325, 370, 445, 464, 488
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FatI CATG 9 cut(s) 65, 172, 177, 232, 321, 366, 441, 460, 484
FbaI TGATCA 1 cut(s) 268
Fnu4HI GCNGC 5 cut(s) 26, 29, 85, 88, 418
FriOI GRGCYC 3 cut(s) 76, 134, 405
Fsp4HI GCNGC 5 cut(s) 26, 29, 85, 88, 418
GluI GCNGC 5 cut(s) 26, 29, 85, 88, 418
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 391
Hin1II CATG 9 cut(s) 69, 176, 181, 236, 325, 370, 445, 464, 488
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 278
Hpy188I TCNGA 5 cut(s) 118, 142, 246, 451, 499
Hpy188III TCNNGA 4 cut(s) 185, 228, 424, 485
HpyAV CCTTC 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 69, 84, 90
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 71, 96
HpyF3I CTNAG 1 cut(s) 95
Hsp92II CATG 9 cut(s) 69, 176, 181, 236, 325, 370, 445, 464, 488
KpnI GGTACC 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 3 cut(s) 268, 340, 409
LguI GCTCTTC 1 cut(s) 393
Lsp1109I GCAGC 5 cut(s) 37, 40, 74, 96, 429
MaeIII GTNAC 1 cut(s) 168
MalI GATC 3 cut(s) 270, 342, 411
MboI GATC 3 cut(s) 268, 340, 409
MboII GAAGA 4 cut(s) 96, 404, 410, 499
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 4 cut(s) 76, 134, 335, 405
MluCI AATT 5 cut(s) 112, 302, 427, 445, 515
MseI TTAA 1 cut(s) 523
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 1 cut(s) 391
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 49, 71, 96
NcoI CCATGG 3 cut(s) 177, 321, 366
NdeII GATC 3 cut(s) 268, 340, 409
NlaIII CATG 9 cut(s) 69, 176, 181, 236, 325, 370, 445, 464, 488
NlaIV GGNNCC 1 cut(s) 149
NmuCI GTSAC 1 cut(s) 168
NspI RCATGY 3 cut(s) 69, 176, 236
PaeI GCATGC 1 cut(s) 69
PagI TCATGA 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 254
PceI AGGCCT 1 cut(s) 224
PciI ACATGT 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 393
PkrI GCNGC 5 cut(s) 27, 30, 86, 89, 419
PscI ACATGT 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 92
PsuI RGATCY 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 87
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 311
SacI GAGCTC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 393
SaqAI TTAA 1 cut(s) 523
SatI GCNGC 5 cut(s) 26, 29, 85, 88, 418
Sau3AI GATC 3 cut(s) 268, 340, 409
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 4 cut(s) 76, 134, 335, 405
SetI ASST 8 cut(s) 54, 89, 126, 134, 140, 149, 268, 480
SfcI CTRYAG 1 cut(s) 88
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 133, 226
SmoI CTYRAG 2 cut(s) 133, 226
SphI GCATGC 1 cut(s) 69
Sse9I AATT 5 cut(s) 112, 302, 427, 445, 515
SseBI AGGCCT 1 cut(s) 224
SsiI CCGC 1 cut(s) 371
SstI GAGCTC 1 cut(s) 134
StuI AGGCCT 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 20
StyI CCWWGG 3 cut(s) 177, 321, 366
TaqI TCGA 1 cut(s) 110
TasI AATT 5 cut(s) 112, 302, 427, 445, 515
Tru1I TTAA 1 cut(s) 523
Tru9I TTAA 1 cut(s) 523
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 5 cut(s) 25, 28, 84, 87, 417
Tsp45I GTSAC 1 cut(s) 168
TspDTI ATGAA 6 cut(s) 17, 96, 295, 458, 473, 501
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 4 cut(s) 112, 302, 445, 515
XceI RCATGY 3 cut(s) 69, 176, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.