FvH4_3g01350

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011981
Physical Location & Seq
Reverse (-)
683883 .. 684413
531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01350.t1

Sequence Viewer

Length: 531 bp
ATGAAATCCTCCAGGCAGCACAAGAAGCAACCGCAGCTGAATCGTAGAGCTCCGATTCGGGCATTGTGTTGCAGTAGCTGCAGGCTCAGCGTGTCTTCGTCTTCCGAGCAGGAAGTAGAGAGTTCCAGCACTTCTGATCGTAACAGGTATCCATCTATATCAAGCATAGCGCATGCCATGGTTCAAGAGAGACTAGATCAGGTGATTAGAGAGAGGCAGGAGGAGGAGGCCACGAGAGCGCATGTGGATCGTCGGAGAAGAAAGAACAAAGCAATATATGATGATCGAGCACAAGGAACGGGGACTAAATTTGTGGTAATGGTTGCGATGGAAAAGTGTTCCTATGATCCGAGAGAAGATTTTAGGGAGTCCATGGAGGAAATGATAATGGCAAAACGGATTGAAGAGCCAAAGGATCTTCGTAGCCTCTTGAATTACTACGTTTCGATGAATTCAGAGGAGTATCATGAGATTATACTCGAGGTGTTTCATGAAGTTTGCTCTGATTTATTCCTATGTAAATGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

177

Amino Acids

20.67

Weight (kDa)

7.62

Isoelectric Point (pI)

77.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 114 - 171 3.8e-23 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 3 cut(s) 255, 341, 423
AcsI RAATTY 2 cut(s) 308, 451
AgsI TTSAA 3 cut(s) 185, 404, 433
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 3 cut(s) 37, 50, 78
AluI AGCT 3 cut(s) 37, 50, 78
Alw21I GWGCWC 2 cut(s) 52, 292
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 3 cut(s) 255, 341, 423
AlwNI CAGNNNCTG 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 1 cut(s) 228
ApeKI GCWGC 3 cut(s) 16, 34, 78
ApoI RAATTY 2 cut(s) 308, 451
AspLEI GCGC 2 cut(s) 172, 241
AsuHPI GGTGA 1 cut(s) 214
AvaI CYCGRG 1 cut(s) 479
BanII GRGCYC 1 cut(s) 52
BauI CACGAG 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 87, 93
Bbv12I GWGCWC 2 cut(s) 52, 292
BbvI GCAGC 3 cut(s) 28, 46, 65
BccI CCATC 2 cut(s) 160, 322
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 230, 264
BciT130I CCWGG 1 cut(s) 13
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 79
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 3 cut(s) 17, 35, 79
BlpI GCTNAGC 1 cut(s) 86
BlsI GCNGC 3 cut(s) 18, 36, 80
Bme1390I CCNGG 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 479
BmrFI CCNGG 1 cut(s) 13
BpiI GAAGAC 2 cut(s) 87, 93
Bpu1102I GCTNAGC 1 cut(s) 86
BsaJI CCNNGG 2 cut(s) 177, 372
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 177, 372
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 3 cut(s) 236, 239, 473
BseXI GCAGC 3 cut(s) 28, 46, 65
BshFI GGCC 1 cut(s) 230
BsiHKAI GWGCWC 2 cut(s) 52, 292
BsiHKCI CYCGRG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 184
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 1 cut(s) 230
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 2 cut(s) 52, 292
Bsp143I GATC 6 cut(s) 136, 196, 247, 283, 346, 415
Bsp1720I GCTNAGC 1 cut(s) 86
Bsp19I CCATGG 2 cut(s) 177, 372
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 230
BspCNI CTCAG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 466, 490
BspMAI CTGCAG 1 cut(s) 83
BspPI GGATC 3 cut(s) 255, 341, 423
BspQI GCTCTTC 1 cut(s) 399
BssECI CCNNGG 2 cut(s) 177, 372
BssMI GATC 6 cut(s) 136, 196, 247, 283, 346, 415
BssSI CACGAG 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 177, 372
Bst2BI CACGAG 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 399
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 83, 174
BstDEI CTNAG 1 cut(s) 86
BstDSI CCRYGG 2 cut(s) 177, 372
BstHHI GCGC 2 cut(s) 172, 241
BstKTI GATC 6 cut(s) 139, 199, 250, 286, 349, 418
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 6 cut(s) 136, 196, 247, 283, 346, 415
BstMWI GCNNNNNNNGC 5 cut(s) 25, 34, 78, 87, 236
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 2 cut(s) 176, 245
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 1 cut(s) 79
BstV1I GCAGC 3 cut(s) 28, 46, 65
BstV2I GAAGAC 2 cut(s) 87, 93
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 1 cut(s) 230
BtgI CCRYGG 2 cut(s) 177, 372
BtgZI GCGATG 1 cut(s) 341
Cac8I GCNNGC 2 cut(s) 83, 174
CaiI CAGNNNCTG 1 cut(s) 78
CciI TCATGA 2 cut(s) 466, 490
CfoI GCGC 2 cut(s) 172, 241
CviAII CATG 6 cut(s) 173, 178, 242, 373, 467, 491
CviJI RGCY 7 cut(s) 37, 50, 78, 85, 230, 409, 426
CviKI_1 RGCY 7 cut(s) 37, 50, 78, 85, 230, 409, 426
DdeI CTNAG 1 cut(s) 86
DpnI GATC 6 cut(s) 138, 198, 249, 285, 348, 417
DpnII GATC 6 cut(s) 136, 196, 247, 283, 346, 415
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 2 cut(s) 177, 372
Eco24I GRGCYC 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 479
EcoICRI GAGCTC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 2 cut(s) 177, 372
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 177, 372
FaeI CATG 6 cut(s) 176, 181, 245, 376, 470, 494
FaqI GGGAC 1 cut(s) 316
FatI CATG 6 cut(s) 172, 177, 241, 372, 466, 490
Fnu4HI GCNGC 3 cut(s) 17, 35, 79
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 17, 35, 79
FspBI CTAG 1 cut(s) 194
GlaI GCGC 2 cut(s) 171, 240
GluI GCNGC 3 cut(s) 17, 35, 79
HaeIII GGCC 1 cut(s) 230
HhaI GCGC 2 cut(s) 172, 241
Hin1II CATG 6 cut(s) 176, 181, 245, 376, 470, 494
Hin6I GCGC 2 cut(s) 170, 239
HinP1I GCGC 2 cut(s) 170, 239
HinfI GANTC 3 cut(s) 40, 55, 368
HphI GGTGA 1 cut(s) 214
Hpy188I TCNGA 7 cut(s) 54, 106, 136, 255, 351, 457, 505
Hpy188III TCNNGA 4 cut(s) 185, 430, 467, 491
Hpy99I CGWCG 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 2 cut(s) 72, 81
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 34, 78, 87, 236
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 6 cut(s) 176, 181, 245, 376, 470, 494
HspAI GCGC 2 cut(s) 170, 239
Kzo9I GATC 6 cut(s) 136, 196, 247, 283, 346, 415
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 7 cut(s) 25, 67, 95, 130, 139, 185, 203
Lsp1109I GCAGC 3 cut(s) 28, 46, 65
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 1 cut(s) 140
MalI GATC 6 cut(s) 138, 198, 249, 285, 348, 417
MboI GATC 6 cut(s) 136, 196, 247, 283, 346, 415
MboII GAAGA 6 cut(s) 87, 93, 270, 368, 410, 416
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 52, 292
MluCI AATT 3 cut(s) 308, 433, 451
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 9 cut(s) 19, 207, 214, 217, 220, 370, 437, 451, 475
MspA1I CMGCKG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 5 cut(s) 25, 34, 78, 87, 236
NcoI CCATGG 2 cut(s) 177, 372
NdeII GATC 6 cut(s) 136, 196, 247, 283, 346, 415
NlaIII CATG 6 cut(s) 176, 181, 245, 376, 470, 494
NspI RCATGY 2 cut(s) 176, 245
PaeI GCATGC 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 479
PagI TCATGA 2 cut(s) 466, 490
PciSI GCTCTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 40, 55
PkrI GCNGC 3 cut(s) 18, 36, 80
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspXI VCTCGAGB 1 cut(s) 479
PstI CTGCAG 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 37
SacI GAGCTC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 399
SatI GCNGC 3 cut(s) 17, 35, 79
Sau3AI GATC 6 cut(s) 136, 196, 247, 283, 346, 415
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 2 cut(s) 52, 292
SetI ASST 7 cut(s) 39, 52, 80, 149, 204, 444, 486
SfcI CTRYAG 1 cut(s) 79
Sfr274I CTCGAG 1 cut(s) 479
SlaI CTCGAG 1 cut(s) 479
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
SphI GCATGC 1 cut(s) 176
Sse9I AATT 3 cut(s) 308, 433, 451
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 194
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 2 cut(s) 177, 372
TaiI ACGT 1 cut(s) 444
TaqI TCGA 3 cut(s) 286, 446, 480
TasI AATT 3 cut(s) 308, 433, 451
TfiI GAWTC 2 cut(s) 40, 55
TseI GCWGC 3 cut(s) 16, 34, 78
TspDTI ATGAA 4 cut(s) 17, 464, 479, 507
TspGWI ACGGA 1 cut(s) 412
XapI RAATTY 2 cut(s) 308, 451
XceI RCATGY 2 cut(s) 176, 245
XhoI CTCGAG 1 cut(s) 479
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.