Rw5G001490

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011981
Physical Location & Seq
Reverse (-)
1249338 .. 1249871
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001490.1

Sequence Viewer

Length: 534 bp
ATGAGAGCCTCCAGGCAGCACAAGAAGCAAGCGCAGCTGCAACGTAGAGCTCCGATTCGGGCATTGTGCTGCAGTAGCTGCAGGCTCAGCGTGTCTTCGTCTTCCGAGGAAGTCGAGAGCTCCAGCACTTCTGATCGTAACAGGTACCCGTCGATATCAAGCTTAGCGCATGCGATGGTTCAAGAGAGACTAGACCAAATGATTAGAGAGAGGCAGGAGGAGGATGCAGCGAGAGTAGTGCATGTGGATCGTCGGAGAAGAAAGAACAAAGTAGTATATGATGATCGAGCACAAGCAACAGGTTCGACTAAATTTGTCGTAATGGTTGCGATGGAAAAGTGTTCTTATGATCCAAGAGAAGATTTTAGGGAGTCCATGGCGGAGATGATAATGGCAAAGCGGATCGAAGAGCCAAAGGATCTCCGTAGCCTCTTGAATTACTATGTTTCGATGAATTCGGAGGAGTATCACGGGATTATACTCGAGGTGTTTCATGAAGTTTGCTCTGATTTGTTCCTATGTAAATGCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

177

Amino Acids

20.67

Weight (kDa)

8.47

Isoelectric Point (pI)

69.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 115 - 172 6.3e-23 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AciI CCGC 2 cut(s) 380, 400
AclWI GGATC 4 cut(s) 255, 344, 410, 426
AcsI RAATTY 2 cut(s) 311, 454
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 2 cut(s) 182, 436
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 5 cut(s) 37, 50, 78, 120, 162
AluI AGCT 5 cut(s) 37, 50, 78, 120, 162
Alw21I GWGCWC 3 cut(s) 52, 122, 292
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 4 cut(s) 255, 344, 410, 426
AlwNI CAGNNNCTG 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 482
ApeKI GCWGC 6 cut(s) 16, 34, 37, 69, 78, 227
ApoI RAATTY 2 cut(s) 311, 454
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 34, 169
AvaI CYCGRG 1 cut(s) 482
BanI GGYRCC 1 cut(s) 144
BanII GRGCYC 2 cut(s) 52, 122
BbsI GAAGAC 2 cut(s) 87, 93
Bbv12I GWGCWC 3 cut(s) 52, 122, 292
BbvI GCAGC 6 cut(s) 24, 28, 46, 56, 65, 239
BccI CCATC 2 cut(s) 169, 325
BcgI CGANNNNNNTGC 6 cut(s) 220, 230, 254, 264, 285, 319
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 191
BfmI CTRYAG 2 cut(s) 70, 79
BisI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 228
BlpI GCTNAGC 2 cut(s) 86, 163
BlsI GCNGC 6 cut(s) 18, 36, 39, 71, 80, 229
Bme1390I CCNGG 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 482
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 2 cut(s) 87, 93
BpmI CTGGAG 1 cut(s) 106
Bpu1102I GCTNAGC 2 cut(s) 86, 163
BsaJI CCNNGG 2 cut(s) 105, 375
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 105, 375
BseGI GGATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 233, 476
BseXI GCAGC 6 cut(s) 24, 28, 46, 56, 65, 239
BshNI GGYRCC 1 cut(s) 144
BsiHKAI GWGCWC 3 cut(s) 52, 122, 292
BsiHKCI CYCGRG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 3 cut(s) 52, 122, 292
Bsp143I GATC 6 cut(s) 133, 247, 283, 349, 402, 418
Bsp1720I GCTNAGC 2 cut(s) 86, 163
Bsp19I CCATGG 1 cut(s) 375
BspACI CCGC 2 cut(s) 380, 400
BspCNI CTCAG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 146
BspMAI CTGCAG 2 cut(s) 74, 83
BspPI GGATC 4 cut(s) 255, 344, 410, 426
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 144
BssECI CCNNGG 2 cut(s) 105, 375
BssMI GATC 6 cut(s) 133, 247, 283, 349, 402, 418
BssT1I CCWWGG 1 cut(s) 375
Bst2UI CCWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 402
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 30, 83, 171
BstDEI CTNAG 2 cut(s) 86, 163
BstDSI CCRYGG 1 cut(s) 375
BstF5I GGATG 1 cut(s) 229
BstHHI GCGC 2 cut(s) 34, 169
BstKTI GATC 6 cut(s) 136, 250, 286, 352, 405, 421
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 6 cut(s) 133, 247, 283, 349, 402, 418
BstMWI GCNNNNNNNGC 5 cut(s) 25, 34, 75, 78, 87
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 2 cut(s) 173, 245
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 70, 79
BstV1I GCAGC 6 cut(s) 24, 28, 46, 56, 65, 239
BstV2I GAAGAC 2 cut(s) 87, 93
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 375
BtgZI GCGATG 2 cut(s) 188, 344
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 30, 83, 171
CaiI CAGNNNCTG 1 cut(s) 78
CciI TCATGA 1 cut(s) 493
CfoI GCGC 2 cut(s) 34, 169
Csp6I GTAC 1 cut(s) 145
CviAII CATG 4 cut(s) 170, 242, 376, 494
CviJI RGCY 9 cut(s) 8, 37, 50, 78, 85, 120, 162, 412, 429
CviKI_1 RGCY 9 cut(s) 8, 37, 50, 78, 85, 120, 162, 412, 429
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 86, 163
DpnI GATC 6 cut(s) 135, 249, 285, 351, 404, 420
DpnII GATC 6 cut(s) 133, 247, 283, 349, 402, 418
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EciI GGCGGA 1 cut(s) 395
Ecl136II GAGCTC 2 cut(s) 50, 120
Eco130I CCWWGG 1 cut(s) 375
Eco24I GRGCYC 2 cut(s) 52, 122
Eco32I GATATC 1 cut(s) 156
Eco53kI GAGCTC 2 cut(s) 50, 120
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 2 cut(s) 50, 120
EcoRI GAATTC 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 375
EcoT38I GRGCYC 2 cut(s) 52, 122
ErhI CCWWGG 1 cut(s) 375
FaeI CATG 4 cut(s) 173, 245, 379, 497
FatI CATG 4 cut(s) 169, 241, 375, 493
Fnu4HI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 228
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 2 cut(s) 52, 122
Fsp4HI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 228
FspBI CTAG 1 cut(s) 191
GlaI GCGC 2 cut(s) 33, 168
GluI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 228
GsuI CTGGAG 1 cut(s) 106
HhaI GCGC 2 cut(s) 34, 169
Hin1II CATG 4 cut(s) 173, 245, 379, 497
Hin6I GCGC 2 cut(s) 32, 167
HinP1I GCGC 2 cut(s) 32, 167
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 2 cut(s) 55, 371
Hpy188I TCNGA 6 cut(s) 54, 106, 133, 255, 460, 508
Hpy188III TCNNGA 4 cut(s) 115, 182, 433, 494
Hpy99I CGWCG 2 cut(s) 154, 255
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 40, 72, 81, 227, 241
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 34, 75, 78, 87
HpyF3I CTNAG 2 cut(s) 86, 163
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 4 cut(s) 173, 245, 379, 497
HspAI GCGC 2 cut(s) 32, 167
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 6 cut(s) 133, 247, 283, 349, 402, 418
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 2 cut(s) 55, 125
LpnPI CCDG 6 cut(s) 25, 67, 127, 136, 200, 285
Lsp1109I GCAGC 6 cut(s) 24, 28, 46, 56, 65, 239
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 137
MalI GATC 6 cut(s) 135, 249, 285, 351, 404, 420
MboI GATC 6 cut(s) 133, 247, 283, 349, 402, 418
MboII GAAGA 5 cut(s) 87, 93, 270, 371, 419
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 3 cut(s) 52, 122, 292
MluCI AATT 3 cut(s) 311, 436, 454
MlyI GAGTC 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 8 cut(s) 19, 100, 204, 211, 214, 440, 454, 478
MseI TTAA 1 cut(s) 532
MspA1I CMGCKG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 5 cut(s) 25, 34, 75, 78, 87
NcoI CCATGG 1 cut(s) 375
NdeII GATC 6 cut(s) 133, 247, 283, 349, 402, 418
NlaIII CATG 4 cut(s) 173, 245, 379, 497
NlaIV GGNNCC 1 cut(s) 146
NspI RCATGY 2 cut(s) 173, 245
PaeI GCATGC 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 482
PagI TCATGA 1 cut(s) 493
PciSI GCTCTTC 1 cut(s) 402
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 6 cut(s) 18, 36, 39, 71, 80, 229
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
Psp124BI GAGCTC 2 cut(s) 52, 122
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 482
PstI CTGCAG 2 cut(s) 74, 83
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 2 cut(s) 52, 122
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 1 cut(s) 532
SatI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 228
Sau3AI GATC 6 cut(s) 133, 247, 283, 349, 402, 418
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 3 cut(s) 52, 122, 292
SetI ASST 9 cut(s) 39, 46, 52, 80, 122, 146, 164, 304, 489
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 2 cut(s) 70, 79
Sfr274I CTCGAG 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SphI GCATGC 1 cut(s) 173
Sse9I AATT 3 cut(s) 311, 436, 454
SsiI CCGC 2 cut(s) 380, 400
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 2 cut(s) 52, 122
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 375
TaiI ACGT 1 cut(s) 46
TaqI TCGA 7 cut(s) 114, 152, 286, 305, 405, 449, 483
TasI AATT 3 cut(s) 311, 436, 454
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TseI GCWGC 6 cut(s) 16, 34, 37, 69, 78, 227
TspDTI ATGAA 3 cut(s) 467, 482, 510
TspGWI ACGGA 1 cut(s) 413
XapI RAATTY 2 cut(s) 311, 454
XceI RCATGY 2 cut(s) 173, 245
XhoI CTCGAG 1 cut(s) 482
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.