pycom05g32100

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0011981
Physical Location & Seq
Reverse (-)
31622455 .. 31622916
462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32100.1

Sequence Viewer

Length: 462 bp
ATGCAAGCATTGTGTTGCAGCAGCTGCCGGCTTAGCATGTCTTCGTCTAGCTCGGAGGAAGTAGCCAGCTCTAGTTCCGACAAATACCCTTCAATATCAAGCCTATCGCATGCCATGGTTCAAGAAAGACTCGACCAGATGATCAGGGAAGGGCAGGAGGGCTCGAGGCACGTTGATCATCGGAGAAGAAAGCAGAGAGCTGGTGATGATCATGATCAACTTCAAGCAGGAGGGACTAAATGTGTTGTAATGATTGGAATGGAGAAGTGTTCTTATGATCCGAGGGAGGATTTCAGGGAGTCCATGCCGGCGATGATAATGGAAAACCGGATAGAAGAGCCTAAAGATCTTCGTAGCCTCTTGAATTATTATGTTTCGATGAATTCGGATGAGTATCGTGAGCTTATACTCGAGGTGTTTCATGAAGTTTGCTCTGATTTTTTATTGTGTAAATTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

154

Amino Acids

17.61

Weight (kDa)

5.36

Isoelectric Point (pI)

63.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 91 - 146 2.8e-20 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 2 cut(s) 382, 452
AgsI TTSAA 4 cut(s) 93, 122, 224, 364
AluBI AGCT 5 cut(s) 24, 51, 69, 200, 403
AluI AGCT 5 cut(s) 24, 51, 69, 200, 403
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 24
Ama87I CYCGRG 2 cut(s) 163, 410
ApeKI GCWGC 3 cut(s) 18, 21, 24
ApoI RAATTY 2 cut(s) 382, 452
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 2 cut(s) 163, 410
BanII GRGCYC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 3 cut(s) 11, 30, 33
BclI TGATCA 4 cut(s) 141, 175, 208, 214
BfaI CTAG 2 cut(s) 48, 72
BglII AGATCT 1 cut(s) 346
BisI GCNGC 3 cut(s) 19, 22, 25
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 3 cut(s) 20, 23, 26
BmeT110I CYCGRG 2 cut(s) 163, 410
BpiI GAAGAC 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 32
BsaBI GATNNNNATC 2 cut(s) 213, 393
BsaJI CCNNGG 2 cut(s) 114, 281
BsaWI WCCGGW 1 cut(s) 327
Bse118I RCCGGY 2 cut(s) 27, 307
Bse8I GATNNNNATC 2 cut(s) 213, 393
BseDI CCNNGG 2 cut(s) 114, 281
BseGI GGATG 1 cut(s) 394
BseJI GATNNNNATC 2 cut(s) 213, 393
BseXI GCAGC 3 cut(s) 11, 30, 33
BsiHKCI CYCGRG 2 cut(s) 163, 410
BsiSI CCGG 3 cut(s) 28, 308, 328
BslFI GGGAC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 247
BsoBI CYCGRG 2 cut(s) 163, 410
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 6 cut(s) 141, 175, 208, 214, 277, 346
Bsp1720I GCTNAGC 1 cut(s) 32
Bsp19I CCATGG 1 cut(s) 114
BspHI TCATGA 2 cut(s) 211, 421
BspPI GGATC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 330
BsrFI RCCGGY 2 cut(s) 27, 307
BssAI RCCGGY 2 cut(s) 27, 307
BssECI CCNNGG 2 cut(s) 114, 281
BssMI GATC 6 cut(s) 141, 175, 208, 214, 277, 346
BssT1I CCWWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 24
BstC8I GCNNGC 5 cut(s) 6, 29, 67, 111, 309
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 6 cut(s) 144, 178, 211, 217, 280, 349
BstMBI GATC 6 cut(s) 141, 175, 208, 214, 277, 346
BstMWI GCNNNNNNNGC 2 cut(s) 24, 33
BstNSI RCATGY 2 cut(s) 40, 113
BstV1I GCAGC 3 cut(s) 11, 30, 33
BstV2I GAAGAC 1 cut(s) 33
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BtgI CCRYGG 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 326
BtsCI GGATG 1 cut(s) 394
Cac8I GCNNGC 5 cut(s) 6, 29, 67, 111, 309
CaiI CAGNNNCTG 1 cut(s) 24
CciI TCATGA 2 cut(s) 211, 421
Cfr10I RCCGGY 2 cut(s) 27, 307
CviAII CATG 6 cut(s) 37, 110, 115, 212, 304, 422
DdeI CTNAG 1 cut(s) 32
DpnI GATC 6 cut(s) 143, 177, 210, 216, 279, 348
DpnII GATC 6 cut(s) 141, 175, 208, 214, 277, 346
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 164
Eco88I CYCGRG 2 cut(s) 163, 410
EcoRI GAATTC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 40, 113, 118, 215, 307, 425
FaiI YATR 9 cut(s) 38, 111, 116, 213, 276, 305, 372, 407, 423
FaqI GGGAC 1 cut(s) 247
FatI CATG 6 cut(s) 36, 109, 114, 211, 303, 421
FbaI TGATCA 4 cut(s) 141, 175, 208, 214
Fnu4HI GCNGC 3 cut(s) 19, 22, 25
FokI GGATG 1 cut(s) 401
FriOI GRGCYC 1 cut(s) 164
Fsp4HI GCNGC 3 cut(s) 19, 22, 25
FspBI CTAG 2 cut(s) 48, 72
GluI GCNGC 3 cut(s) 19, 22, 25
HapII CCGG 3 cut(s) 28, 308, 328
Hin1II CATG 6 cut(s) 40, 113, 118, 215, 307, 425
HinfI GANTC 2 cut(s) 129, 299
HpaII CCGG 3 cut(s) 28, 308, 328
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 6 cut(s) 55, 79, 183, 282, 388, 436
Hpy188III TCNNGA 5 cut(s) 122, 212, 361, 398, 422
HpyAV CCTTC 2 cut(s) 99, 143
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 2 cut(s) 4, 18
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 33
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 6 cut(s) 40, 113, 118, 215, 307, 425
KroI GCCGGC 2 cut(s) 27, 307
KroNI GCCGGC 2 cut(s) 29, 309
Ksp22I TGATCA 4 cut(s) 141, 175, 208, 214
Kzo9I GATC 6 cut(s) 141, 175, 208, 214, 277, 346
LguI GCTCTTC 1 cut(s) 330
Lsp1109I GCAGC 3 cut(s) 11, 30, 33
MaeI CTAG 2 cut(s) 48, 72
MaeII ACGT 1 cut(s) 171
MalI GATC 6 cut(s) 143, 177, 210, 216, 279, 348
MboI GATC 6 cut(s) 141, 175, 208, 214, 277, 346
MboII GAAGA 4 cut(s) 33, 198, 341, 347
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 3 cut(s) 364, 382, 452
MlyI GAGTC 2 cut(s) 123, 308
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 8 cut(s) 49, 151, 159, 224, 276, 280, 368, 406
MroNI GCCGGC 2 cut(s) 27, 307
MseI TTAA 1 cut(s) 460
MspA1I CMGCKG 1 cut(s) 24
MspI CCGG 3 cut(s) 28, 308, 328
MwoI GCNNNNNNNGC 2 cut(s) 24, 33
NaeI GCCGGC 2 cut(s) 29, 309
NcoI CCATGG 1 cut(s) 114
NdeII GATC 6 cut(s) 141, 175, 208, 214, 277, 346
NgoMIV GCCGGC 2 cut(s) 27, 307
NlaIII CATG 6 cut(s) 40, 113, 118, 215, 307, 425
NspI RCATGY 2 cut(s) 40, 113
PaeI GCATGC 1 cut(s) 113
PaeR7I CTCGAG 2 cut(s) 163, 410
PagI TCATGA 2 cut(s) 211, 421
PciSI GCTCTTC 1 cut(s) 330
PdiI GCCGGC 2 cut(s) 29, 309
PkrI GCNGC 3 cut(s) 20, 23, 26
PleI GAGTC 2 cut(s) 123, 307
PpsI GAGTC 2 cut(s) 123, 307
PspXI VCTCGAGB 2 cut(s) 163, 410
PstNI CAGNNNCTG 1 cut(s) 24
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 1 cut(s) 460
SatI GCNGC 3 cut(s) 19, 22, 25
Sau3AI GATC 6 cut(s) 141, 175, 208, 214, 277, 346
SchI GAGTC 2 cut(s) 123, 308
SduI GDGCHC 1 cut(s) 164
SetI ASST 7 cut(s) 26, 53, 71, 174, 202, 405, 417
Sfr274I CTCGAG 2 cut(s) 163, 410
SlaI CTCGAG 2 cut(s) 163, 410
SmlI CTYRAG 2 cut(s) 163, 410
SmoI CTYRAG 2 cut(s) 163, 410
SphI GCATGC 1 cut(s) 113
Sse9I AATT 3 cut(s) 364, 382, 452
SspMI CTAG 2 cut(s) 48, 72
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 174
TaqI TCGA 4 cut(s) 132, 164, 377, 411
TasI AATT 3 cut(s) 364, 382, 452
Tru1I TTAA 1 cut(s) 460
Tru9I TTAA 1 cut(s) 460
TseI GCWGC 3 cut(s) 18, 21, 24
TspDTI ATGAA 3 cut(s) 395, 410, 438
XapI RAATTY 2 cut(s) 382, 452
XceI RCATGY 2 cut(s) 40, 113
XhoI CTCGAG 2 cut(s) 163, 410
XspI CTAG 2 cut(s) 48, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.