Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Forward (+)

56045331 .. 56047597

Gene Structure 2267 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0394100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAGTGAGGTCTTCGAAGGCTACGAACGTCAGTACTGTGAGCTCTCCGCCAACCTCTCCCGGAAATGTAACGCCGCCGCTCTTCTTCCTGACCAAGGGCAGAAGCAGCAGAGGTTTTCTGAGATTAGAGCTGGATTGGATGATGCTGATGGTTTGATTCGGAAAATGGACCTGGAAGCAAGAAGCTTGCAGCCGGGGGCAAAGGCGGTGCTGCTTGCAAAGTTGAGGGAGTACAAATCTGATCTCAATAAGTTGAAGAGGGAGATCAAAAGAATCACATCACCTAATGCTAATGAGATAGCTCGTGATGAGCTTTTGGAGTCTGGGATGGCGGATATGCACGCGGTTTCTTCTGATCAAAGAGAGAGAGTGGCAATGTCAGTTGAGAGATTAAATCAGTCAAGTGACAGAATTACTGAGAGCAGAAGAACCATAATGGAGACCGAAGAGCTTGGTGTCTCCATTCTCCAAGATTTGCATCAACAGCGTGAAACTCTCCTACATTCCCATAAGAAACTTCACGGGGTAGATGATGCCATCGACAAAAGTAAAAAAGTCTTGACTTCCATGTCACGGAGGATGACCAAGCATAAATGGATCGTCGGCTCAGTCATTGGAGCTCTTGTTGTTGCAATCCTATTTGTTATGTATTTTAAGCTCTCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

222

Amino Acids

25.25

Weight (kDa)

9.18

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
V-SNARE	PF05008	1 - 92	2.2e-28	Vesicle transport v-SNARE protein N-terminus
V-SNARE_C	PF12352	129 - 194	2.2e-23	Snare region anchored in the vesicle membrane C-terminus
Sec20	PF03908	137 - 217	3.3e-06	Sec20

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	568
AccBSI	CCGCTC	1 cut(s)	80
AccII	CGCG	1 cut(s)	344
AciI	CCGC	6 cut(s)	48, 75, 78, 206, 332, 344
AclWI	GGATC	1 cut(s)	605
AfaI	GTAC	2 cut(s)	35, 233
AfiI	CCNNNNNNNGG	2 cut(s)	95, 573
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	8 cut(s)	43, 131, 186, 302, 313, 451, 620, 658
AluI	AGCT	8 cut(s)	43, 131, 186, 302, 313, 451, 620, 658
Alw21I	GWGCWC	2 cut(s)	45, 622
Alw26I	GTCTC	2 cut(s)	434, 463
AlwI	GGATC	1 cut(s)	605
ApeKI	GCWGC	3 cut(s)	106, 190, 211
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	2 cut(s)	61, 195
AsuHPI	GGTGA	1 cut(s)	273
AsuII	TTCGAA	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	45, 622
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	4
Bbv12I	GWGCWC	2 cut(s)	45, 622
BbvI	GCAGC	3 cut(s)	118, 198, 202
BccI	CCATC	3 cut(s)	143, 322, 545
BciT130I	CCWGG	1 cut(s)	173
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	61, 195
BcoDI	GTCTC	2 cut(s)	434, 463
BisI	GCNGC	5 cut(s)	75, 78, 107, 191, 212
BlsI	GCNGC	5 cut(s)	76, 79, 108, 192, 213
BmcAI	AGTACT	1 cut(s)	35
Bme1390I	CCNGG	3 cut(s)	61, 173, 195
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	3 cut(s)	61, 173, 195
BmsI	GCATC	3 cut(s)	133, 487, 523
BpiI	GAAGAC	1 cut(s)	4
Bpu14I	TTCGAA	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	61, 195
BsaBI	GATNNNNATC	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	94, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 573
Bse3DI	GCAATG	1 cut(s)	381
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	94, 194
BseGI	GGATG	3 cut(s)	145, 333, 585
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	2 cut(s)	95, 573
BseMI	GCAATG	1 cut(s)	381
BseMII	CTCAG	3 cut(s)	111, 408, 621
BseXI	GCAGC	3 cut(s)	118, 198, 202
Bsh1236I	CGCG	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	45, 622
BsiSI	CCGG	2 cut(s)	61, 194
BslI	CCNNNNNNNGG	2 cut(s)	95, 573
BsmAI	GTCTC	2 cut(s)	434, 463
Bso31I	GGTCTC	1 cut(s)	434
Bsp119I	TTCGAA	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	45, 622
Bsp143I	GATC	4 cut(s)	241, 264, 355, 597
BspACI	CCGC	6 cut(s)	48, 75, 78, 206, 332, 344
BspCNI	CTCAG	3 cut(s)	112, 409, 620
BspFNI	CGCG	1 cut(s)	344
BspPI	GGATC	1 cut(s)	605
BspQI	GCTCTTC	2 cut(s)	87, 441
BspT104I	TTCGAA	1 cut(s)	15
BspTNI	GGTCTC	1 cut(s)	434
BsrBI	CCGCTC	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	381
BssECI	CCNNGG	2 cut(s)	94, 194
BssMI	GATC	4 cut(s)	241, 264, 355, 597
BssSI	CACGAG	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	94
Bst2BI	CACGAG	1 cut(s)	303
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	3 cut(s)	87, 251, 441
BstBI	TTCGAA	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	188, 216, 342
BstDEI	CTNAG	3 cut(s)	120, 417, 607
BstENI	CCTNNNNNAGG	1 cut(s)	93
BstF5I	GGATG	3 cut(s)	145, 333, 585
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	4 cut(s)	244, 267, 358, 600
BstMAI	GTCTC	2 cut(s)	434, 463
BstMBI	GATC	4 cut(s)	241, 264, 355, 597
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 484
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	3 cut(s)	59, 171, 193
BstUI	CGCG	1 cut(s)	344
BstV1I	GCAGC	3 cut(s)	118, 198, 202
BstV2I	GAAGAC	1 cut(s)	4
BtsCI	GGATG	3 cut(s)	145, 333, 585
Cac8I	GCNNGC	3 cut(s)	188, 216, 342
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	34, 232
CviAII	CATG	1 cut(s)	568
CviQI	GTAC	2 cut(s)	34, 232
DdeI	CTNAG	3 cut(s)	120, 417, 607
DpnI	GATC	4 cut(s)	243, 266, 357, 599
DpnII	GATC	4 cut(s)	241, 264, 355, 597
DrdI	GACNNNNNNGTC	1 cut(s)	568
DseDI	GACNNNNNNGTC	1 cut(s)	568
Eam1104I	CTCTTC	3 cut(s)	87, 251, 441
EarI	CTCTTC	3 cut(s)	87, 251, 441
EciI	GGCGGA	2 cut(s)	37, 347
Ecl136II	GAGCTC	2 cut(s)	43, 620
Eco130I	CCWWGG	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	45, 622
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	169
Eco53kI	GAGCTC	2 cut(s)	43, 620
EcoICRI	GAGCTC	2 cut(s)	43, 620
EcoNI	CCTNNNNNAGG	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	94
EcoT38I	GRGCYC	2 cut(s)	45, 622
ErhI	CCWWGG	1 cut(s)	94
FaeI	CATG	1 cut(s)	571
FaiI	YATR	6 cut(s)	338, 434, 510, 569, 591, 647
FatI	CATG	1 cut(s)	567
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	5 cut(s)	75, 78, 107, 191, 212
FokI	GGATG	3 cut(s)	152, 340, 592
FriOI	GRGCYC	2 cut(s)	45, 622
Fsp4HI	GCNGC	5 cut(s)	75, 78, 107, 191, 212
GluI	GCNGC	5 cut(s)	75, 78, 107, 191, 212
HapII	CCGG	2 cut(s)	61, 194
Hin1II	CATG	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	3 cut(s)	157, 273, 320
HpaII	CCGG	2 cut(s)	61, 194
HphI	GGTGA	1 cut(s)	273
Hpy188I	TCNGA	4 cut(s)	121, 162, 241, 355
Hpy188III	TCNNGA	3 cut(s)	89, 305, 559
Hpy99I	CGWCG	1 cut(s)	605
HpyAV	CCTTC	1 cut(s)	11
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	5 cut(s)	190, 218, 340, 478, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 484
HpyF3I	CTNAG	3 cut(s)	120, 417, 607
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	241, 264, 355, 597
LguI	GCTCTTC	2 cut(s)	87, 441
LmnI	GCTCC	1 cut(s)	617
LpnPI	CCDG	7 cut(s)	74, 102, 117, 158, 185, 207, 309
Lsp1109I	GCAGC	3 cut(s)	118, 198, 202
LweI	GCATC	3 cut(s)	133, 487, 523
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	3 cut(s)	68, 404, 570
MalI	GATC	4 cut(s)	243, 266, 357, 599
MbiI	CCGCTC	1 cut(s)	80
MboI	GATC	4 cut(s)	241, 264, 355, 597
MboII	GAAGA	7 cut(s)	4, 74, 77, 268, 342, 438, 458
MhlI	GDGCHC	2 cut(s)	45, 622
MluCI	AATT	1 cut(s)	411
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	5 cut(s)	65, 105, 219, 252, 570
MseI	TTAA	3 cut(s)	392, 654, 667
MspI	CCGG	2 cut(s)	61, 194
MspR9I	CCNGG	3 cut(s)	61, 173, 195
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	106, 484
NciI	CCSGG	2 cut(s)	61, 195
NdeII	GATC	4 cut(s)	241, 264, 355, 597
NlaIII	CATG	1 cut(s)	571
NmuCI	GTSAC	2 cut(s)	404, 570
NspV	TTCGAA	1 cut(s)	15
PciSI	GCTCTTC	2 cut(s)	87, 441
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	2 cut(s)	157, 273
PfoI	TCCNGGA	1 cut(s)	59
PkrI	GCNGC	5 cut(s)	76, 79, 108, 192, 213
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
Psp124BI	GAGCTC	2 cut(s)	45, 622
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	169
RsaI	GTAC	2 cut(s)	35, 233
RsaNI	GTAC	2 cut(s)	34, 232
SacI	GAGCTC	2 cut(s)	45, 622
SapI	GCTCTTC	2 cut(s)	87, 441
SaqAI	TTAA	3 cut(s)	392, 654, 667
SatI	GCNGC	5 cut(s)	75, 78, 107, 191, 212
Sau3AI	GATC	4 cut(s)	241, 264, 355, 597
Sau96I	GGNCC	1 cut(s)	169
ScaI	AGTACT	1 cut(s)	35
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	3 cut(s)	61, 173, 195
SduI	GDGCHC	2 cut(s)	45, 622
SfaNI	GCATC	3 cut(s)	133, 487, 523
SfuI	TTCGAA	1 cut(s)	15
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	411
SsiI	CCGC	6 cut(s)	48, 75, 78, 206, 332, 344
SstI	GAGCTC	2 cut(s)	45, 622
StyD4I	CCNGG	3 cut(s)	59, 171, 193
StyI	CCWWGG	1 cut(s)	94
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	15, 540
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	1 cut(s)	411
TatI	WGTACW	2 cut(s)	33, 231
TauI	GCSGC	2 cut(s)	77, 80
TfiI	GAWTC	2 cut(s)	157, 273
Tru1I	TTAA	3 cut(s)	392, 654, 667
Tru9I	TTAA	3 cut(s)	392, 654, 667
TseFI	GTSAC	2 cut(s)	404, 570
TseI	GCWGC	3 cut(s)	106, 190, 211
Tsp45I	GTSAC	2 cut(s)	404, 570
TspGWI	ACGGA	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	93
ZrmI	AGTACT	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.