Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Forward (+)

343105 .. 344632

Gene Structure 1528 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG004000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGTATGGTTTCAAAGGTGGACCTGCTGGTATCATGAAATGCAAATACGTTGAGCTTACACCGGAGTATGTTTATCCATACAGAAATCAGGATGGTTTTGATATGATTTGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCAGTTTAAGCAAGCACATGAGACAGCTATGAAGCTTGATTTGGATGGTCTTGTTGTGATTGGAGGAGATGACTCAAACACAAATGCGTGCCTCCTTGCTGAAAACTTTAAGGGACTGAACTTGAAAACTCGGGTGATAGGTTGCCCAAAAACTATTGATGGTGATTTGAAATGTAAAGAGCTCCCCACGAGTTTCGGGTTCGATACAGCTTGCAAGATATATTCAGAAATGATTGGCAATGTCATGATAGATGCCCGATCAACCGGAAAATATTATCATTTTGTACGGCTTATGGGGCGTGCAGCTTCACACATTACATTAGAGTGTGCTTTGCAACCTCATCCAAATATCACAATTATTGGAGAAGAGGATGCGGCAAAGAAGCAGACACTGAAAAATGTCACAGATTACATTGTAAACATCATCTTGAAGCGTGTGGATTCTGATTGGGACTGGCCGGTTGACATGAAACCTGTGGTTCTAACTTGTGAGAATATTGGGACTGCCCAACTTGTGGTTCTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

222

Amino Acids

24.73

Weight (kDa)

5.61

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PFK	PF00365	1 - 183	3e-27	Phosphofructokinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccB7I	CCANNNNNTGG	1 cut(s)	655
AciI	CCGC	1 cut(s)	515
AcoI	YGGCCR	1 cut(s)	596
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	655
AgsI	TTSAA	5 cut(s)	13, 131, 265, 310, 571
AjuI	GAANNNNNNNTTGG	3 cut(s)	164, 196, 642
AluBI	AGCT	6 cut(s)	55, 167, 175, 322, 350, 446
AluI	AGCT	6 cut(s)	55, 167, 175, 322, 350, 446
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	2 cut(s)	114, 155
AlwNI	CAGNNNCTG	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	1 cut(s)	443
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	2 cut(s)	286, 314
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	324
BauI	CACGAG	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	3 cut(s)	86, 179, 293
BceAI	ACGGC	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	114, 155
BfuAI	ACCTGC	1 cut(s)	31
BisI	GCNGC	2 cut(s)	444, 516
BlsI	GCNGC	2 cut(s)	445, 517
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	1 cut(s)	20
BmsI	GCATC	2 cut(s)	382, 502
BpmI	CTGGAG	1 cut(s)	120
BsaWI	WCCGGW	2 cut(s)	61, 404
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	1 cut(s)	599
Bse3DI	GCAATG	1 cut(s)	385
BseGI	GGATG	4 cut(s)	97, 190, 481, 517
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	385
BseNI	ACTGG	1 cut(s)	599
BseRI	GAGGAG	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	62, 405, 599
BslFI	GGGAC	3 cut(s)	267, 605, 655
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	2 cut(s)	114, 155
BsmFI	GGGAC	3 cut(s)	267, 605, 655
BsnI	GGCC	1 cut(s)	598
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	398
BspACI	CCGC	1 cut(s)	515
BspANI	GGCC	1 cut(s)	598
BspHI	TCATGA	2 cut(s)	33, 384
BspMI	ACCTGC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	599
BssAI	RCCGGY	1 cut(s)	598
BssMI	GATC	1 cut(s)	398
BssSI	CACGAG	1 cut(s)	328
Bst2BI	CACGAG	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	112, 501
BstC8I	GCNNGC	4 cut(s)	153, 229, 352, 441
BstF5I	GGATG	4 cut(s)	97, 190, 481, 517
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	2 cut(s)	114, 155
BstMBI	GATC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 436
BstV1I	GCAGC	1 cut(s)	455
BsuRI	GGCC	1 cut(s)	598
BtsCI	GGATG	4 cut(s)	97, 190, 481, 517
BtsIMutI	CAGTG	1 cut(s)	530
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	4 cut(s)	153, 229, 352, 441
CaiI	CAGNNNCTG	1 cut(s)	532
CciI	TCATGA	2 cut(s)	33, 384
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	4 cut(s)	34, 158, 385, 607
CviJI	RGCY	8 cut(s)	55, 167, 175, 322, 350, 430, 446, 598
CviKI_1	RGCY	8 cut(s)	55, 167, 175, 322, 350, 430, 446, 598
CviQI	GTAC	1 cut(s)	425
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	596
Eam1104I	CTCTTC	2 cut(s)	112, 501
EarI	CTCTTC	2 cut(s)	112, 501
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	4 cut(s)	37, 161, 388, 610
FaqI	GGGAC	3 cut(s)	267, 605, 655
FatI	CATG	4 cut(s)	33, 157, 384, 606
Fnu4HI	GCNGC	2 cut(s)	444, 516
FokI	GGATG	4 cut(s)	104, 197, 468, 524
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	2 cut(s)	444, 516
GluI	GCNGC	2 cut(s)	444, 516
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	3 cut(s)	62, 405, 599
Hin1II	CATG	4 cut(s)	37, 161, 388, 610
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	2 cut(s)	212, 581
HpaII	CCGG	3 cut(s)	62, 405, 599
HphI	GGTGA	2 cut(s)	286, 314
Hpy166II	GTNNAC	3 cut(s)	20, 559, 604
Hpy188I	TCNGA	2 cut(s)	367, 586
Hpy188III	TCNNGA	5 cut(s)	34, 89, 137, 385, 568
Hpy8I	GTNNAC	3 cut(s)	20, 559, 604
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	42, 354, 443, 475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 436
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	4 cut(s)	37, 161, 388, 610
Kzo9I	GATC	1 cut(s)	398
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	9 cut(s)	12, 36, 74, 75, 150, 418, 580, 612, 627
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	382, 502
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	2 cut(s)	129, 518
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	4 cut(s)	197, 242, 489, 502
MseI	TTAA	2 cut(s)	147, 249
MslI	CAYNNNNRTG	1 cut(s)	463
MspI	CCGG	3 cut(s)	62, 405, 599
MwoI	GCNNNNNNNGC	2 cut(s)	148, 436
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	4 cut(s)	37, 161, 388, 610
NmuCI	GTSAC	1 cut(s)	541
PagI	TCATGA	2 cut(s)	33, 384
PfeI	GAWTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	655
PkrI	GCNGC	2 cut(s)	445, 517
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	532
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
RseI	CAYNNNNRTG	1 cut(s)	463
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	147, 249
SatI	GCNGC	2 cut(s)	444, 516
Sau3AI	GATC	1 cut(s)	398
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	324
SfaNI	GCATC	2 cut(s)	382, 502
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	463
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	1 cut(s)	515
SspI	AATATT	2 cut(s)	413, 637
SstI	GAGCTC	1 cut(s)	324
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	342
TasI	AATT	1 cut(s)	495
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	147, 249
Tru9I	TTAA	2 cut(s)	147, 249
TscAI	CASTG	1 cut(s)	537
TseFI	GTSAC	1 cut(s)	541
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	541
TspDTI	ATGAA	3 cut(s)	50, 185, 623
TspRI	CASTG	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.