MD13G1182600.v1.1
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
15289703 .. 15290359
657 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1182600.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGGTAAATGGAATGGCAACACTAGTTTCAAGGCTGGTGTTTCTCCTGAATGTCTGATTTGCTCTAGGAGAGGGCATACAGCTCCTAATTGCTACTATAGGTCTGAAAATGGAAATTCTCAATCATCTGGGATTACAATGTGTCAAATTTGTGGAAAAATGGGGCATATTGCTCTGGAATGCTACCATAGGAACAATTATGCATATCAAGGGAGTCCACCACCAACATCTCTTGCTGCAATGACTGCACAAACACAAATTGATCAGAATGAGACAAGGCAACAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

97

Amino Acids

10.51

Weight (kDa)

8.6

Isoelectric Point (pI)

65.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 115, 147
AgsI TTSAA 1 cut(s) 31
AhlI ACTAGT 1 cut(s) 23
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 115, 147
BbvI GCAGC 1 cut(s) 223
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 266
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 2 cut(s) 24, 66
BfmI CTRYAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 246
BseXI GCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 266
BsmI GAATGC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 262
BsrDI GCAATG 1 cut(s) 246
BssMI GATC 1 cut(s) 262
BstAPI GCANNNNNTGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 265
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 223
CviJI RGCY 2 cut(s) 35, 83
CviKI_1 RGCY 2 cut(s) 35, 83
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 205
FaiI YATR 6 cut(s) 78, 99, 168, 189, 201, 205
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 2 cut(s) 24, 66
GluI GCNGC 1 cut(s) 237
HinfI GANTC 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 3 cut(s) 57, 106, 267
Hpy188III TCNNGA 2 cut(s) 47, 176
Hpy8I GTNNAC 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 203, 239, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 4 cut(s) 21, 60, 114, 161
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 2 cut(s) 24, 66
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MluCI AATT 5 cut(s) 88, 115, 147, 196, 258
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 1 cut(s) 65
Mph1103I ATGCAT 1 cut(s) 205
Mva1269I GAATGC 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 205
PctI GAATGC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 1 cut(s) 262
SchI GAGTC 1 cut(s) 223
SetI ASST 2 cut(s) 85, 104
SfcI CTRYAG 1 cut(s) 97
SgeI CNNG 9 cut(s) 36, 43, 48, 59, 78, 141, 188, 221, 245
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 5 cut(s) 88, 115, 147, 196, 258
SspMI CTAG 2 cut(s) 24, 66
TasI AATT 5 cut(s) 88, 115, 147, 196, 258
TseI GCWGC 1 cut(s) 236
XapI RAATTY 2 cut(s) 115, 147
XspI CTAG 2 cut(s) 24, 66
Zsp2I ATGCAT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.