Catalytic subunit of pyrophosphate--fructose 6-phosphate 1-phosphotransferase. Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PFK | PF00365 | 100 - 465 | 3.8e-37 | Phosphofructokinase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 987 |
| AccB1I | GGYRCC | 1 cut(s) | 256 |
| AccII | CGCG | 2 cut(s) | 212, 381 |
| AccIII | TCCGGA | 1 cut(s) | 353 |
| AciI | CCGC | 9 cut(s) | 30, 35, 39, 42, 177, 189, 379, 414, 1392 |
| AclWI | GGATC | 2 cut(s) | 434, 1184 |
| AcoI | YGGCCR | 4 cut(s) | 36, 73, 1294, 1654 |
| AcsI | RAATTY | 4 cut(s) | 357, 1068, 1444, 1583 |
| AcuI | CTGAAG | 4 cut(s) | 628, 986, 1032, 1176 |
| AcyI | GRCGYC | 1 cut(s) | 257 |
| AdeI | CACNNNGTG | 2 cut(s) | 346, 952 |
| AfaI | GTAC | 1 cut(s) | 822 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 71 |
| AjiI | CACGTC | 2 cut(s) | 836, 1507 |
| AjnI | CCWGG | 3 cut(s) | 102, 1633, 1689 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 560, 592, 1458, 1490 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 1692 |
| AluBI | AGCT | 7 cut(s) | 183, 563, 571, 842, 922, 1138, 1400 |
| AluI | AGCT | 7 cut(s) | 183, 563, 571, 842, 922, 1138, 1400 |
| Alw21I | GWGCWC | 3 cut(s) | 147, 1402, 1573 |
| Alw26I | GTCTC | 4 cut(s) | 1134, 1247, 1317, 1510 |
| Alw44I | GTGCAC | 1 cut(s) | 1569 |
| AlwI | GGATC | 2 cut(s) | 434, 1184 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 59 |
| Ama87I | CYCGRG | 1 cut(s) | 1034 |
| Aor13HI | TCCGGA | 1 cut(s) | 353 |
| AoxI | GGCC | 9 cut(s) | 36, 73, 105, 277, 322, 416, 1074, 1294, 1654 |
| ApaLI | GTGCAC | 1 cut(s) | 1569 |
| ApeKI | GCWGC | 3 cut(s) | 839, 911, 1042 |
| ApoI | RAATTY | 4 cut(s) | 357, 1068, 1444, 1583 |
| AseI | ATTAAT | 1 cut(s) | 1499 |
| AspLEI | GCGC | 5 cut(s) | 127, 259, 331, 383, 553 |
| AspS9I | GGNCC | 7 cut(s) | 100, 173, 277, 416, 718, 1075, 1637 |
| AsuC2I | CCSGG | 3 cut(s) | 333, 458, 793 |
| AsuHPI | GGTGA | 2 cut(s) | 61, 710 |
| AvaI | CYCGRG | 1 cut(s) | 1034 |
| AvaII | GGWCC | 4 cut(s) | 100, 173, 718, 1637 |
| AxyI | CCTNAGG | 1 cut(s) | 1595 |
| BaeGI | GKGCMC | 2 cut(s) | 342, 1573 |
| BalI | TGGCCA | 1 cut(s) | 1296 |
| BanI | GGYRCC | 1 cut(s) | 256 |
| BanII | GRGCYC | 1 cut(s) | 1402 |
| BauI | CACGAG | 1 cut(s) | 666 |
| Bbv12I | GWGCWC | 3 cut(s) | 147, 1402, 1573 |
| BbvI | GCAGC | 3 cut(s) | 851, 898, 1054 |
| BccI | CCATC | 4 cut(s) | 250, 575, 1091, 1546 |
| BceAI | ACGGC | 4 cut(s) | 29, 43, 1500, 1669 |
| BciT130I | CCWGG | 3 cut(s) | 104, 1635, 1691 |
| BcnI | CCSGG | 3 cut(s) | 333, 458, 793 |
| BcoDI | GTCTC | 4 cut(s) | 1134, 1247, 1317, 1510 |
| BfaI | CTAG | 1 cut(s) | 1133 |
| BfmI | CTRYAG | 1 cut(s) | 91 |
| BfoI | RGCGCY | 2 cut(s) | 260, 332 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 50, 337 |
| BisI | GCNGC | 8 cut(s) | 36, 39, 42, 189, 840, 912, 1043, 1392 |
| BlsI | GCNGC | 8 cut(s) | 37, 40, 43, 190, 841, 913, 1044, 1393 |
| Bme1390I | CCNGG | 6 cut(s) | 104, 333, 458, 793, 1635, 1691 |
| Bme18I | GGWCC | 4 cut(s) | 100, 173, 718, 1637 |
| BmeT110I | CYCGRG | 1 cut(s) | 1034 |
| BmgBI | CACGTC | 2 cut(s) | 836, 1507 |
| BmgT120I | GGNCC | 7 cut(s) | 100, 173, 277, 416, 718, 1075, 1637 |
| BmiI | GGNNCC | 5 cut(s) | 6, 175, 258, 720, 1639 |
| BmrFI | CCNGG | 6 cut(s) | 104, 333, 458, 793, 1635, 1691 |
| BmrI | ACTGGG | 2 cut(s) | 1431, 1615 |
| BmsI | GCATC | 7 cut(s) | 20, 778, 1167, 1224, 1441, 1598, 1670 |
| BmuI | ACTGGG | 2 cut(s) | 1431, 1615 |
| BpmI | CTGGAG | 4 cut(s) | 48, 339, 516, 1416 |
| BpuMI | CCSGG | 3 cut(s) | 333, 458, 793 |
| BsaHI | GRCGYC | 1 cut(s) | 257 |
| BsaJI | CCNNGG | 4 cut(s) | 456, 979, 1035, 1303 |
| BsaWI | WCCGGW | 3 cut(s) | 283, 353, 800 |
| BsaXI | ACNNNNNCTCC | 7 cut(s) | 278, 308, 891, 921, 1507, 1537, 1692 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 71 |
| Bse118I | RCCGGY | 2 cut(s) | 71, 191 |
| Bse1I | ACTGG | 7 cut(s) | 21, 65, 108, 1126, 1297, 1426, 1610 |
| Bse21I | CCTNAGG | 1 cut(s) | 1595 |
| Bse3DI | GCAATG | 1 cut(s) | 781 |
| BseAI | TCCGGA | 1 cut(s) | 353 |
| BseBI | CCWGG | 3 cut(s) | 104, 1635, 1691 |
| BseDI | CCNNGG | 4 cut(s) | 456, 979, 1035, 1303 |
| BseGI | GGATG | 5 cut(s) | 586, 877, 1456, 1589, 1661 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 71 |
| BseMI | GCAATG | 1 cut(s) | 781 |
| BseMII | CTCAG | 2 cut(s) | 1586, 1687 |
| BseNI | ACTGG | 7 cut(s) | 21, 65, 108, 1126, 1297, 1426, 1610 |
| BseRI | GAGGAG | 2 cut(s) | 218, 1285 |
| BseSI | GKGCMC | 2 cut(s) | 342, 1573 |
| BseX3I | CGGCCG | 2 cut(s) | 36, 73 |
| BseXI | GCAGC | 3 cut(s) | 851, 898, 1054 |
| BseYI | CCCAGC | 1 cut(s) | 422 |
| BsgI | GTGCAG | 3 cut(s) | 231, 858, 1061 |
| Bsh1236I | CGCG | 2 cut(s) | 212, 381 |
| Bsh1285I | CGRYCG | 2 cut(s) | 39, 76 |
| BshFI | GGCC | 9 cut(s) | 38, 75, 107, 279, 324, 418, 1076, 1296, 1656 |
| BshNI | GGYRCC | 1 cut(s) | 256 |
| BsiEI | CGRYCG | 2 cut(s) | 39, 76 |
| BsiHKAI | GWGCWC | 3 cut(s) | 147, 1402, 1573 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1034 |
| BsiSI | CCGG | 8 cut(s) | 72, 192, 284, 333, 354, 458, 793, 801 |
| BslFI | GGGAC | 5 cut(s) | 159, 530, 704, 846, 1623 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 71 |
| BsmAI | GTCTC | 4 cut(s) | 1134, 1247, 1317, 1510 |
| BsmFI | GGGAC | 5 cut(s) | 159, 530, 704, 846, 1623 |
| BsnI | GGCC | 9 cut(s) | 38, 75, 107, 279, 324, 418, 1076, 1296, 1656 |
| BsoBI | CYCGRG | 1 cut(s) | 1034 |
| Bsp1286I | GDGCHC | 4 cut(s) | 147, 342, 1402, 1573 |
| Bsp13I | TCCGGA | 1 cut(s) | 353 |
| Bsp143I | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| Bsp68I | TCGCGA | 1 cut(s) | 212 |
| BspACI | CCGC | 9 cut(s) | 30, 35, 39, 42, 177, 189, 379, 414, 1392 |
| BspANI | GGCC | 9 cut(s) | 38, 75, 107, 279, 324, 418, 1076, 1296, 1656 |
| BspCNI | CTCAG | 2 cut(s) | 1587, 1686 |
| BspEI | TCCGGA | 1 cut(s) | 353 |
| BspFNI | CGCG | 2 cut(s) | 212, 381 |
| BspHI | TCATGA | 2 cut(s) | 429, 780 |
| BspLI | GGNNCC | 5 cut(s) | 6, 175, 258, 720, 1639 |
| BspPI | GGATC | 2 cut(s) | 434, 1184 |
| BspT107I | GGYRCC | 1 cut(s) | 256 |
| BsrDI | GCAATG | 1 cut(s) | 781 |
| BsrFI | RCCGGY | 2 cut(s) | 71, 191 |
| BsrI | ACTGG | 7 cut(s) | 21, 65, 108, 1126, 1297, 1426, 1610 |
| BssAI | RCCGGY | 2 cut(s) | 71, 191 |
| BssECI | CCNNGG | 4 cut(s) | 456, 979, 1035, 1303 |
| BssMI | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| BssNI | GRCGYC | 1 cut(s) | 257 |
| BssSI | CACGAG | 1 cut(s) | 666 |
| BssT1I | CCWWGG | 2 cut(s) | 979, 1303 |
| Bst2BI | CACGAG | 1 cut(s) | 666 |
| Bst2UI | CCWGG | 3 cut(s) | 104, 1635, 1691 |
| Bst4CI | ACNGT | 7 cut(s) | 252, 540, 698, 1311, 1412, 1474, 1622 |
| Bst6I | CTCTTC | 2 cut(s) | 897, 1262 |
| BstACI | GRCGYC | 1 cut(s) | 257 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 59, 1177 |
| BstC8I | GCNNGC | 7 cut(s) | 181, 193, 416, 420, 625, 748, 972 |
| BstDEI | CTNAG | 2 cut(s) | 1595, 1673 |
| BstEII | GGTNACC | 1 cut(s) | 698 |
| BstF5I | GGATG | 5 cut(s) | 586, 877, 1456, 1589, 1661 |
| BstFNI | CGCG | 2 cut(s) | 212, 381 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 332 |
| BstHHI | GCGC | 5 cut(s) | 127, 259, 331, 383, 553 |
| BstKTI | GATC | 5 cut(s) | 210, 303, 351, 429, 1192 |
| BstMAI | GTCTC | 4 cut(s) | 1134, 1247, 1317, 1510 |
| BstMBI | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| BstMCI | CGRYCG | 2 cut(s) | 39, 76 |
| BstNI | CCWGG | 3 cut(s) | 104, 1635, 1691 |
| BstPI | GGTNACC | 1 cut(s) | 698 |
| BstSCI | CCNGG | 6 cut(s) | 102, 331, 456, 791, 1633, 1689 |
| BstSFI | CTRYAG | 1 cut(s) | 91 |
| BstSLI | GKGCMC | 2 cut(s) | 342, 1573 |
| BstUI | CGCG | 2 cut(s) | 212, 381 |
| BstV1I | GCAGC | 3 cut(s) | 851, 898, 1054 |
| BstX2I | RGATCY | 1 cut(s) | 1189 |
| BstYI | RGATCY | 1 cut(s) | 1189 |
| BstZI | CGGCCG | 2 cut(s) | 36, 73 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1595 |
| BsuRI | GGCC | 9 cut(s) | 38, 75, 107, 279, 324, 418, 1076, 1296, 1656 |
| BtgZI | GCGATG | 1 cut(s) | 1565 |
| BtrI | CACGTC | 2 cut(s) | 836, 1507 |
| BtsCI | GGATG | 5 cut(s) | 586, 877, 1456, 1589, 1661 |
| BtsI | GCAGTG | 2 cut(s) | 514, 741 |
| BtsIMutI | CAGTG | 7 cut(s) | 14, 248, 514, 741, 926, 939, 1417 |
| BtuMI | TCGCGA | 1 cut(s) | 212 |
| Cac8I | GCNNGC | 7 cut(s) | 181, 193, 416, 420, 625, 748, 972 |
| CaiI | CAGNNNCTG | 1 cut(s) | 59 |
| CciI | TCATGA | 2 cut(s) | 429, 780 |
| CciNI | GCGGCCGC | 1 cut(s) | 36 |
| CfoI | GCGC | 5 cut(s) | 127, 259, 331, 383, 553 |
| Cfr10I | RCCGGY | 2 cut(s) | 71, 191 |
| Cfr13I | GGNCC | 7 cut(s) | 100, 173, 277, 416, 718, 1075, 1637 |
| Csp6I | GTAC | 1 cut(s) | 821 |
| CviAII | CATG | 6 cut(s) | 122, 430, 781, 1079, 1196, 1520 |
| CviQI | GTAC | 1 cut(s) | 821 |
| DdeI | CTNAG | 2 cut(s) | 1595, 1673 |
| DinI | GGCGCC | 1 cut(s) | 258 |
| DpnI | GATC | 5 cut(s) | 209, 302, 350, 428, 1191 |
| DpnII | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| DraI | TTTAAA | 1 cut(s) | 544 |
| DraIII | CACNNNGTG | 2 cut(s) | 346, 952 |
| EaeI | YGGCCR | 4 cut(s) | 36, 73, 1294, 1654 |
| EagI | CGGCCG | 2 cut(s) | 36, 73 |
| Eam1104I | CTCTTC | 2 cut(s) | 897, 1262 |
| EarI | CTCTTC | 2 cut(s) | 897, 1262 |
| Ecl136II | GAGCTC | 1 cut(s) | 1400 |
| EclXI | CGGCCG | 2 cut(s) | 36, 73 |
| Eco130I | CCWWGG | 2 cut(s) | 979, 1303 |
| Eco24I | GRGCYC | 1 cut(s) | 1402 |
| Eco32I | GATATC | 1 cut(s) | 1431 |
| Eco47I | GGWCC | 4 cut(s) | 100, 173, 718, 1637 |
| Eco52I | CGGCCG | 2 cut(s) | 36, 73 |
| Eco53kI | GAGCTC | 1 cut(s) | 1400 |
| Eco57I | CTGAAG | 4 cut(s) | 628, 986, 1032, 1176 |
| Eco81I | CCTNAGG | 1 cut(s) | 1595 |
| Eco88I | CYCGRG | 1 cut(s) | 1034 |
| Eco91I | GGTNACC | 1 cut(s) | 698 |
| EcoICRI | GAGCTC | 1 cut(s) | 1400 |
| EcoO109I | RGGNCCY | 2 cut(s) | 173, 718 |
| EcoO65I | GGTNACC | 1 cut(s) | 698 |
| EcoRII | CCWGG | 3 cut(s) | 102, 1633, 1689 |
| EcoRV | GATATC | 1 cut(s) | 1431 |
| EcoT14I | CCWWGG | 2 cut(s) | 979, 1303 |
| EcoT22I | ATGCAT | 1 cut(s) | 1381 |
| EcoT38I | GRGCYC | 1 cut(s) | 1402 |
| EgeI | GGCGCC | 1 cut(s) | 258 |
| EheI | GGCGCC | 1 cut(s) | 258 |
| ErhI | CCWWGG | 2 cut(s) | 979, 1303 |
| FaeI | CATG | 6 cut(s) | 125, 433, 784, 1082, 1199, 1523 |
| FaqI | GGGAC | 5 cut(s) | 159, 530, 704, 846, 1623 |
| FatI | CATG | 6 cut(s) | 121, 429, 780, 1078, 1195, 1519 |
| FauI | CCCGC | 2 cut(s) | 184, 407 |
| Fnu4HI | GCNGC | 8 cut(s) | 36, 39, 42, 189, 840, 912, 1043, 1392 |
| FokI | GGATG | 5 cut(s) | 593, 864, 1463, 1576, 1648 |
| FriOI | GRGCYC | 1 cut(s) | 1402 |
| Fsp4HI | GCNGC | 8 cut(s) | 36, 39, 42, 189, 840, 912, 1043, 1392 |
| FspBI | CTAG | 1 cut(s) | 1133 |
| GlaI | GCGC | 5 cut(s) | 126, 258, 330, 382, 552 |
| GluI | GCNGC | 8 cut(s) | 36, 39, 42, 189, 840, 912, 1043, 1392 |
| GsaI | CCCAGC | 1 cut(s) | 426 |
| GsuI | CTGGAG | 4 cut(s) | 48, 339, 516, 1416 |
| HaeII | RGCGCY | 2 cut(s) | 260, 332 |
| HaeIII | GGCC | 9 cut(s) | 38, 75, 107, 279, 324, 418, 1076, 1296, 1656 |
| HapII | CCGG | 8 cut(s) | 72, 192, 284, 333, 354, 458, 793, 801 |
| HhaI | GCGC | 5 cut(s) | 127, 259, 331, 383, 553 |
| Hin1I | GRCGYC | 1 cut(s) | 257 |
| Hin1II | CATG | 6 cut(s) | 125, 433, 784, 1082, 1199, 1523 |
| Hin6I | GCGC | 5 cut(s) | 125, 257, 329, 381, 551 |
| HinP1I | GCGC | 5 cut(s) | 125, 257, 329, 381, 551 |
| HincII | GTYRAC | 1 cut(s) | 798 |
| HindII | GTYRAC | 1 cut(s) | 798 |
| HindIII | AAGCTT | 1 cut(s) | 569 |
| HinfI | GANTC | 4 cut(s) | 78, 266, 608, 1361 |
| HpaII | CCGG | 8 cut(s) | 72, 192, 284, 333, 354, 458, 793, 801 |
| HphI | GGTGA | 2 cut(s) | 61, 710 |
| Hpy166II | GTNNAC | 2 cut(s) | 798, 1571 |
| Hpy188I | TCNGA | 2 cut(s) | 734, 1700 |
| Hpy8I | GTNNAC | 2 cut(s) | 798, 1571 |
| Hpy99I | CGWCG | 2 cut(s) | 50, 170 |
| HpyCH4III | ACNGT | 7 cut(s) | 252, 540, 698, 1311, 1412, 1474, 1622 |
| HpyCH4IV | ACGT | 2 cut(s) | 835, 1506 |
| HpyF3I | CTNAG | 2 cut(s) | 1595, 1673 |
| HpySE526I | ACGT | 2 cut(s) | 835, 1506 |
| Hsp92I | GRCGYC | 1 cut(s) | 257 |
| Hsp92II | CATG | 6 cut(s) | 125, 433, 784, 1082, 1199, 1523 |
| HspAI | GCGC | 5 cut(s) | 125, 257, 329, 381, 551 |
| KasI | GGCGCC | 1 cut(s) | 256 |
| Kpn2I | TCCGGA | 1 cut(s) | 353 |
| KroI | GCCGGC | 1 cut(s) | 191 |
| KroNI | GCCGGC | 1 cut(s) | 193 |
| Kzo9I | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| LmnI | GCTCC | 5 cut(s) | 10, 67, 286, 1397, 1459 |
| Lsp1109I | GCAGC | 3 cut(s) | 851, 898, 1054 |
| LweI | GCATC | 7 cut(s) | 20, 778, 1167, 1224, 1441, 1598, 1670 |
| MaeI | CTAG | 1 cut(s) | 1133 |
| MaeII | ACGT | 2 cut(s) | 835, 1506 |
| MaeIII | GTNAC | 4 cut(s) | 67, 698, 937, 1622 |
| MalI | GATC | 5 cut(s) | 209, 302, 350, 428, 1191 |
| MboI | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| MboII | GAAGA | 8 cut(s) | 310, 664, 914, 1106, 1243, 1279, 1347, 1475 |
| MflI | RGATCY | 1 cut(s) | 1189 |
| MhlI | GDGCHC | 4 cut(s) | 147, 342, 1402, 1573 |
| MlsI | TGGCCA | 1 cut(s) | 1296 |
| MluCI | AATT | 8 cut(s) | 357, 891, 1020, 1058, 1068, 1444, 1583, 1646 |
| MluNI | TGGCCA | 1 cut(s) | 1296 |
| Mly113I | GGCGCC | 1 cut(s) | 257 |
| MlyI | GAGTC | 2 cut(s) | 87, 602 |
| MmeI | TCCRAC | 2 cut(s) | 1373, 1689 |
| Mox20I | TGGCCA | 1 cut(s) | 1296 |
| Mph1103I | ATGCAT | 1 cut(s) | 1381 |
| MroI | TCCGGA | 1 cut(s) | 353 |
| MroNI | GCCGGC | 1 cut(s) | 191 |
| MscI | TGGCCA | 1 cut(s) | 1296 |
| MseI | TTAA | 3 cut(s) | 408, 543, 1499 |
| MslI | CAYNNNNRTG | 2 cut(s) | 859, 1200 |
| Msp20I | TGGCCA | 1 cut(s) | 1296 |
| MspA1I | CMGCKG | 2 cut(s) | 563, 1394 |
| MspI | CCGG | 8 cut(s) | 72, 192, 284, 333, 354, 458, 793, 801 |
| MspR9I | CCNGG | 6 cut(s) | 104, 333, 458, 793, 1635, 1691 |
| MssI | GTTTAAAC | 1 cut(s) | 544 |
| MvaI | CCWGG | 3 cut(s) | 104, 1635, 1691 |
| MvnI | CGCG | 2 cut(s) | 212, 381 |
| NaeI | GCCGGC | 1 cut(s) | 193 |
| NarI | GGCGCC | 1 cut(s) | 257 |
| NciI | CCSGG | 3 cut(s) | 333, 458, 793 |
| NdeII | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| NgoMIV | GCCGGC | 1 cut(s) | 191 |
| NlaIII | CATG | 6 cut(s) | 125, 433, 784, 1082, 1199, 1523 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 175, 258, 720, 1639 |
| NmeAIII | GCCGAG | 1 cut(s) | 101 |
| NmuCI | GTSAC | 3 cut(s) | 67, 698, 937 |
| NotI | GCGGCCGC | 1 cut(s) | 36 |
| NruI | TCGCGA | 1 cut(s) | 212 |
| NsiI | ATGCAT | 1 cut(s) | 1381 |
| PagI | TCATGA | 2 cut(s) | 429, 780 |
| PdiI | GCCGGC | 1 cut(s) | 193 |
| PfeI | GAWTC | 2 cut(s) | 266, 1361 |
| PfoI | TCCNGGA | 1 cut(s) | 1689 |
| PkrI | GCNGC | 8 cut(s) | 37, 40, 43, 190, 841, 913, 1044, 1393 |
| PleI | GAGTC | 2 cut(s) | 86, 602 |
| PluTI | GGCGCC | 1 cut(s) | 260 |
| PmeI | GTTTAAAC | 1 cut(s) | 544 |
| PpsI | GAGTC | 2 cut(s) | 86, 602 |
| PpuMI | RGGWCCY | 2 cut(s) | 173, 718 |
| PshBI | ATTAAT | 1 cut(s) | 1499 |
| PsiI | TTATAA | 1 cut(s) | 987 |
| Psp124BI | GAGCTC | 1 cut(s) | 1402 |
| Psp5II | RGGWCCY | 2 cut(s) | 173, 718 |
| Psp6I | CCWGG | 3 cut(s) | 102, 1633, 1689 |
| PspEI | GGTNACC | 1 cut(s) | 698 |
| PspFI | CCCAGC | 1 cut(s) | 422 |
| PspGI | CCWGG | 3 cut(s) | 102, 1633, 1689 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 175, 258, 720, 1639 |
| PspPI | GGNCC | 7 cut(s) | 100, 173, 277, 416, 718, 1075, 1637 |
| PspPPI | RGGWCCY | 2 cut(s) | 173, 718 |
| PstNI | CAGNNNCTG | 1 cut(s) | 59 |
| PsuI | RGATCY | 1 cut(s) | 1189 |
| PvuII | CAGCTG | 1 cut(s) | 563 |
| RruI | TCGCGA | 1 cut(s) | 212 |
| RsaI | GTAC | 1 cut(s) | 822 |
| RsaNI | GTAC | 1 cut(s) | 821 |
| RseI | CAYNNNNRTG | 2 cut(s) | 859, 1200 |
| SacI | GAGCTC | 1 cut(s) | 1402 |
| SaqAI | TTAA | 3 cut(s) | 408, 543, 1499 |
| SatI | GCNGC | 8 cut(s) | 36, 39, 42, 189, 840, 912, 1043, 1392 |
| Sau3AI | GATC | 5 cut(s) | 207, 300, 348, 426, 1189 |
| Sau96I | GGNCC | 7 cut(s) | 100, 173, 277, 416, 718, 1075, 1637 |
| SchI | GAGTC | 2 cut(s) | 87, 602 |
| ScrFI | CCNGG | 6 cut(s) | 104, 333, 458, 793, 1635, 1691 |
| SduI | GDGCHC | 4 cut(s) | 147, 342, 1402, 1573 |
| SfaNI | GCATC | 7 cut(s) | 20, 778, 1167, 1224, 1441, 1598, 1670 |
| SfcI | CTRYAG | 1 cut(s) | 91 |
| SfoI | GGCGCC | 1 cut(s) | 258 |
| SinI | GGWCC | 4 cut(s) | 100, 173, 718, 1637 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 859, 1200 |
| Sse9I | AATT | 8 cut(s) | 357, 891, 1020, 1058, 1068, 1444, 1583, 1646 |
| SsiI | CCGC | 9 cut(s) | 30, 35, 39, 42, 177, 189, 379, 414, 1392 |
| SspDI | GGCGCC | 1 cut(s) | 256 |
| SspI | AATATT | 1 cut(s) | 809 |
| SspMI | CTAG | 1 cut(s) | 1133 |
| SstI | GAGCTC | 1 cut(s) | 1402 |
| StyD4I | CCNGG | 6 cut(s) | 102, 331, 456, 791, 1633, 1689 |
| StyI | CCWWGG | 2 cut(s) | 979, 1303 |
| TaaI | ACNGT | 7 cut(s) | 252, 540, 698, 1311, 1412, 1474, 1622 |
| TaiI | ACGT | 2 cut(s) | 838, 1509 |
| TaqI | TCGA | 6 cut(s) | 48, 117, 168, 363, 447, 495 |
| TaqII | GACCGA | 1 cut(s) | 224 |
| TasI | AATT | 8 cut(s) | 357, 891, 1020, 1058, 1068, 1444, 1583, 1646 |
| TauI | GCSGC | 5 cut(s) | 38, 41, 44, 191, 1394 |
| TfiI | GAWTC | 2 cut(s) | 266, 1361 |
| Tru1I | TTAA | 3 cut(s) | 408, 543, 1499 |
| Tru9I | TTAA | 3 cut(s) | 408, 543, 1499 |
| TscAI | CASTG | 7 cut(s) | 21, 255, 514, 748, 933, 946, 1417 |
| TseFI | GTSAC | 3 cut(s) | 67, 698, 937 |
| TseI | GCWGC | 3 cut(s) | 839, 911, 1042 |
| Tsp45I | GTSAC | 3 cut(s) | 67, 698, 937 |
| TspDTI | ATGAA | 7 cut(s) | 446, 1018, 1080, 1107, 1275, 1344, 1485 |
| TspGWI | ACGGA | 2 cut(s) | 76, 259 |
| TspRI | CASTG | 7 cut(s) | 21, 255, 514, 748, 933, 946, 1417 |
| VneI | GTGCAC | 1 cut(s) | 1569 |
| VpaK11BI | GGWCC | 4 cut(s) | 100, 173, 718, 1637 |
| VspI | ATTAAT | 1 cut(s) | 1499 |
| XapI | RAATTY | 4 cut(s) | 357, 1068, 1444, 1583 |
| XbaI | TCTAGA | 1 cut(s) | 1132 |
| XspI | CTAG | 1 cut(s) | 1133 |
| Zsp2I | ATGCAT | 1 cut(s) | 1381 |