Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Forward (+)

19111112 .. 19112291

Gene Structure 1180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g15580.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGATTGCTGGTCTTGCTGGATTACCTAGGGAGTATGGTGTTATTCGTACTGTTATATTGGCCAGGGAGTCTACACTCACTTTGAATGAGTTCAGAGCATTGTTACTTGGGACTGATAGGGAAATCGAAGGAGAAATGAATACACTTACTCAGAATCTATCAGCACTCTATGTTCAAGGGTCAAGTTCTGGTTCAAATACTGATTCTGGTTCTTCTGCTTCATCTTCAAATTCTCACAGTCATGCTCATATTCCGGCCATCACTGCTGGTACTATCACTTCTGTACCTTATGCTTCACAACCATCCTTACAACCATCTCAAGTTCAACATCCCTTTTATTCTCTACCACCACCTCAGTTTCCAAATGATTCATTTGGTTACGGTTTTTCTGGAAACTCAAGTGGTCAAAATGCATCTAGACCACAGTCTGTGAATGCACAATCTGGATCTTTTGTGAATCACTATAGGGGTAGCAACAACTATAGAGGTGGAAACAATTACAGAAATAACAATGGTTTCAGAGGAAGAGGATATAATTCTGGTAATTCAGGGGGTTCAAGGCAATCTGGAAATAGAAATAATAATTGGTCAGGCATGGTTGATACTAGAACTACTTTGCTGATTGAATGTCAGATTTGTAACAAACGTGGACACACTGCAGTTAATTGCTTTCATAGGAATTCGAATGTACCAACCACAGGTGTTGTAGTAGAGTGTCAAATATGTGGGAAAAGGGGTCACTCGGCCTTGGATTGCTATCAAAGGGGAAACTATGCGTATCAAGGACAACCTCCACCTCCATCACTGTCTGCAATGAATGCACAACAGACTTCATCATTTCTTCCTCAAGATGCTTGGATTGTTGATTCTGGTGCGTCCCATCATATAACTTCTGATAGCAGTATAACAATTGGGAATGGTACAGGACAAGAAGACAAAGGAGATAGTGTACCACGGAAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

322

Amino Acids

34.3

Weight (kDa)

8.53

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	454
AcoI	YGGCCR	2 cut(s)	60, 255
AcsI	RAATTY	2 cut(s)	229, 679
AfaI	GTAC	6 cut(s)	49, 271, 285, 690, 922, 951
AfiI	CCNNNNNNNGG	1 cut(s)	698
AgsI	TTSAA	7 cut(s)	85, 176, 195, 228, 326, 558, 626
AjnI	CCWGG	1 cut(s)	62
AjuI	GAANNNNNNNTTGG	2 cut(s)	568, 600
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	3 cut(s)	60, 255, 744
ApoI	RAATTY	2 cut(s)	229, 679
Asp700I	GAANNNNTTC	1 cut(s)	89
AspA2I	CCTAGG	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	683
AvrII	CCTAGG	1 cut(s)	26
BaeI	ACNNNNGTAYC	2 cut(s)	267, 300
BalI	TGGCCA	1 cut(s)	62
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BbsI	GAAGAC	1 cut(s)	939
BccI	CCATC	5 cut(s)	266, 310, 322, 808, 888
BciT130I	CCWGG	1 cut(s)	64
BfaI	CTAG	3 cut(s)	27, 417, 606
BfmI	CTRYAG	3 cut(s)	463, 481, 657
BlnI	CCTAGG	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	2 cut(s)	422, 841
BoxI	GACNNNNGTC	1 cut(s)	424
BpiI	GAAGAC	1 cut(s)	939
Bpu14I	TTCGAA	1 cut(s)	683
BpuEI	CTTGAG	3 cut(s)	303, 382, 831
BsaBI	GATNNNNATC	1 cut(s)	756
BsaJI	CCNNGG	4 cut(s)	26, 63, 747, 953
BsaXI	ACNNNNNCTCC	2 cut(s)	933, 963
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse3DI	GCAATG	1 cut(s)	819
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	64
BseDI	CCNNGG	4 cut(s)	26, 63, 747, 953
BseGI	GGATG	2 cut(s)	302, 328
BseJI	GATNNNNATC	1 cut(s)	756
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	2 cut(s)	164, 368
BshFI	GGCC	3 cut(s)	62, 257, 746
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	2 cut(s)	124, 862
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmFI	GGGAC	2 cut(s)	124, 862
BsmI	GAATGC	2 cut(s)	439, 823
BsnI	GGCC	3 cut(s)	62, 257, 746
Bsp119I	TTCGAA	1 cut(s)	683
Bsp143I	GATC	1 cut(s)	446
BspANI	GGCC	3 cut(s)	62, 257, 746
BspCNI	CTCAG	2 cut(s)	163, 367
BspMAI	CTGCAG	1 cut(s)	661
BspPI	GGATC	1 cut(s)	454
BspT104I	TTCGAA	1 cut(s)	683
BsrDI	GCAATG	1 cut(s)	819
BssECI	CCNNGG	4 cut(s)	26, 63, 747, 953
BssMI	GATC	1 cut(s)	446
BssT1I	CCWWGG	2 cut(s)	26, 747
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	5 cut(s)	52, 239, 383, 426, 807
Bst6I	CTCTTC	1 cut(s)	520
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBI	TTCGAA	1 cut(s)	683
BstDEI	CTNAG	2 cut(s)	150, 354
BstDSI	CCRYGG	1 cut(s)	953
BstF5I	GGATG	2 cut(s)	302, 328
BstKTI	GATC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 263, 818
BstNI	CCWGG	1 cut(s)	64
BstPAI	GACNNNNGTC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	3 cut(s)	463, 481, 657
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	446
BsuRI	GGCC	3 cut(s)	62, 257, 746
BtgI	CCRYGG	1 cut(s)	953
BtsCI	GGATG	2 cut(s)	302, 328
BtsI	GCAGTG	2 cut(s)	261, 654
BtsIMutI	CAGTG	3 cut(s)	261, 654, 803
CseI	GACGC	1 cut(s)	864
Csp6I	GTAC	6 cut(s)	48, 270, 284, 689, 921, 950
CspCI	CAANNNNNGTGG	2 cut(s)	685, 720
CviAII	CATG	2 cut(s)	242, 595
CviJI	RGCY	3 cut(s)	62, 257, 746
CviKI_1	RGCY	3 cut(s)	62, 257, 746
CviQI	GTAC	6 cut(s)	48, 270, 284, 689, 921, 950
DdeI	CTNAG	2 cut(s)	150, 354
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
EaeI	YGGCCR	2 cut(s)	60, 255
Eam1104I	CTCTTC	1 cut(s)	520
EarI	CTCTTC	1 cut(s)	520
Eco130I	CCWWGG	2 cut(s)	26, 747
EcoRI	GAATTC	1 cut(s)	679
EcoRII	CCWGG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	26, 747
EcoT22I	ATGCAT	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	26, 747
FaeI	CATG	2 cut(s)	245, 598
FaqI	GGGAC	2 cut(s)	124, 862
FatI	CATG	2 cut(s)	241, 594
FblI	GTMKAC	1 cut(s)	71
FokI	GGATG	2 cut(s)	289, 315
FspBI	CTAG	3 cut(s)	27, 417, 606
HaeIII	GGCC	3 cut(s)	62, 257, 746
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	1 cut(s)	864
Hin1II	CATG	2 cut(s)	245, 598
HinfI	GANTC	6 cut(s)	68, 154, 203, 368, 457, 866
HpaII	CCGG	1 cut(s)	254
Hpy166II	GTNNAC	3 cut(s)	72, 650, 950
Hpy188I	TCNGA	5 cut(s)	95, 153, 521, 633, 895
Hpy188III	TCNNGA	5 cut(s)	390, 417, 444, 567, 848
Hpy8I	GTNNAC	3 cut(s)	72, 650, 950
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	5 cut(s)	52, 239, 383, 426, 807
HpyCH4IV	ACGT	1 cut(s)	646
HpyCH4V	TGCA	5 cut(s)	413, 437, 659, 812, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 263, 818
HpyF3I	CTNAG	2 cut(s)	150, 354
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	2 cut(s)	245, 598
Kzo9I	GATC	1 cut(s)	446
LweI	GCATC	2 cut(s)	422, 841
MaeI	CTAG	3 cut(s)	27, 417, 606
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	4 cut(s)	102, 377, 638, 737
MalI	GATC	1 cut(s)	448
MboI	GATC	1 cut(s)	446
MboII	GAAGA	5 cut(s)	204, 216, 537, 833, 944
MfeI	CAATTG	1 cut(s)	909
MflI	RGATCY	1 cut(s)	446
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	8 cut(s)	229, 496, 535, 544, 583, 664, 679, 909
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	7 cut(s)	363, 479, 515, 521, 801, 807, 855
Mox20I	TGGCCA	1 cut(s)	62
Mph1103I	ATGCAT	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	663
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	64
MunI	CAATTG	1 cut(s)	909
Mva1269I	GAATGC	2 cut(s)	439, 823
MvaI	CCWGG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	14, 263, 818
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	2 cut(s)	245, 598
NmeAIII	GCCGAG	1 cut(s)	722
NmuCI	GTSAC	1 cut(s)	737
NsiI	ATGCAT	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	683
PctI	GAATGC	2 cut(s)	439, 823
PdmI	GAANNNNTTC	1 cut(s)	89
PfeI	GAWTC	5 cut(s)	154, 203, 368, 457, 866
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	62
PstI	CTGCAG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	446
RsaI	GTAC	6 cut(s)	49, 271, 285, 690, 922, 951
RsaNI	GTAC	6 cut(s)	48, 270, 284, 689, 921, 950
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	663
Sau3AI	GATC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	64
SetI	ASST	8 cut(s)	28, 289, 355, 490, 649, 703, 793, 799
SfaNI	GCATC	2 cut(s)	422, 841
SfcI	CTRYAG	3 cut(s)	463, 481, 657
SfuI	TTCGAA	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	3 cut(s)	318, 397, 846
SmoI	CTYRAG	3 cut(s)	318, 397, 846
Sse9I	AATT	8 cut(s)	229, 496, 535, 544, 583, 664, 679, 909
SspMI	CTAG	3 cut(s)	27, 417, 606
StyD4I	CCNGG	1 cut(s)	62
StyI	CCWWGG	2 cut(s)	26, 747
TaaI	ACNGT	5 cut(s)	52, 239, 383, 426, 807
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	2 cut(s)	126, 683
TasI	AATT	8 cut(s)	229, 496, 535, 544, 583, 664, 679, 909
TfiI	GAWTC	5 cut(s)	154, 203, 368, 457, 866
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	3 cut(s)	268, 661, 810
TseFI	GTSAC	1 cut(s)	737
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	6 cut(s)	152, 210, 360, 662, 822, 830
TspRI	CASTG	3 cut(s)	268, 661, 810
XapI	RAATTY	2 cut(s)	229, 679
XbaI	TCTAGA	1 cut(s)	416
XmaJI	CCTAGG	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	3 cut(s)	27, 417, 606
Zsp2I	ATGCAT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.