MD10G1133500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
21546564 .. 21548803
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1133500.v1.1.491

Sequence Viewer

Length: 561 bp
ATGTTGTTGCTCAACGAGGACAGGGGTTTCATGATGGAGGTTTTGGCTTTGTTAGTCAAAATCAGAGGGAAAAAGGTAGTGGTCCTACTGGTGGGGGCTTTAATCAAGCTAATATACCACCACAGTTTCATTCCAATCGAAACAATGGTAATGGTCAGAGGTATAATTCACGACCACGATTCAATGGAGGAAACGGGTTTAATTCTGGCTATAATAACAGAGGAAATGGCTATGGTAATTCTGGTGGGAGTTTTTAGAATAAGGGAGGTTCAAGTTGGAAAAATTGGAATGGTAATAATGGTCAGAAGTCTACAATTATTCCTGAATGTCAAAATTTGCAACAAACGTGGTTGTACAGCTCCGAATTGTTACTATCGAAATGAACAGCCACCTGTGATACATGGTACTATATCTGAATGCCAAATTTGTGGAAAGCGGGGGCATACTGCTCTCACTTGCTTCCATCGCAGTAACTATGCATATCAAGGTGACAAGGCAACAAAGACAATATTAATGAGAGGAAGGAGTAGTGGAGGTCTGTATTACCATTTCAACGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.98

Weight (kDa)

9.32

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 310
AciI CCGC 1 cut(s) 436
AcsI RAATTY 2 cut(s) 333, 423
AfaI GTAC 2 cut(s) 355, 406
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 3 cut(s) 183, 272, 553
AluBI AGCT 2 cut(s) 109, 359
AluI AGCT 2 cut(s) 109, 359
ApoI RAATTY 2 cut(s) 333, 423
AseI ATTAAT 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 500
AvaII GGWCC 1 cut(s) 82
BccI CCATC 2 cut(s) 28, 471
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 82
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 91
BsmI GAATGC 1 cut(s) 422
Bsp1407I TGTACA 1 cut(s) 353
BspACI CCGC 1 cut(s) 436
BspHI TCATGA 1 cut(s) 30
BsrGI TGTACA 1 cut(s) 353
BsrI ACTGG 1 cut(s) 93
Bst4CI ACNGT 1 cut(s) 125
BstAUI TGTACA 1 cut(s) 353
BstMWI GCNNNNNNNGC 1 cut(s) 465
BstXI CCANNNNNNTGG 1 cut(s) 428
BtgZI GCGATG 1 cut(s) 449
CciI TCATGA 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 354, 405
CspCI CAANNNNNGTGG 2 cut(s) 328, 363
CviAII CATG 2 cut(s) 31, 401
CviJI RGCY 7 cut(s) 47, 98, 109, 209, 230, 359, 388
CviKI_1 RGCY 7 cut(s) 47, 98, 109, 209, 230, 359, 388
CviQI GTAC 2 cut(s) 354, 405
Eco47I GGWCC 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 481
FaeI CATG 2 cut(s) 34, 404
FatI CATG 2 cut(s) 30, 400
FauI CCCGC 1 cut(s) 429
FblI GTMKAC 1 cut(s) 310
Hin1II CATG 2 cut(s) 34, 404
HinfI GANTC 1 cut(s) 179
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 5 cut(s) 65, 158, 305, 363, 415
Hpy188III TCNNGA 3 cut(s) 31, 170, 322
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 2 cut(s) 339, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 465
HpySE526I ACGT 1 cut(s) 346
Hsp92II CATG 2 cut(s) 34, 404
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 6 cut(s) 7, 74, 191, 227, 335, 405
MaeII ACGT 1 cut(s) 346
MaeIII GTNAC 3 cut(s) 368, 470, 488
MluCI AATT 8 cut(s) 165, 201, 237, 282, 314, 333, 364, 423
MmeI TCCRAC 1 cut(s) 256
MnlI CCTC 9 cut(s) 10, 31, 59, 152, 181, 214, 259, 512, 527
Mph1103I ATGCAT 1 cut(s) 481
MseI TTAA 3 cut(s) 101, 200, 512
Mva1269I GAATGC 1 cut(s) 422
MwoI GCNNNNNNNGC 1 cut(s) 465
NlaIII CATG 2 cut(s) 34, 404
NmuCI GTSAC 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 481
PagI TCATGA 1 cut(s) 30
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 179
PshBI ATTAAT 1 cut(s) 512
PspPI GGNCC 1 cut(s) 82
RsaI GTAC 2 cut(s) 355, 406
RsaNI GTAC 2 cut(s) 354, 405
SaqAI TTAA 3 cut(s) 101, 200, 512
Sau96I GGNCC 1 cut(s) 82
SinI GGWCC 1 cut(s) 82
Sse9I AATT 8 cut(s) 165, 201, 237, 282, 314, 333, 364, 423
SsiI CCGC 1 cut(s) 436
SspI AATATT 1 cut(s) 510
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 1 cut(s) 349
TaqI TCGA 2 cut(s) 138, 376
TasI AATT 8 cut(s) 165, 201, 237, 282, 314, 333, 364, 423
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 1 cut(s) 179
Tru1I TTAA 3 cut(s) 101, 200, 512
Tru9I TTAA 3 cut(s) 101, 200, 512
TseFI GTSAC 1 cut(s) 488
Tsp45I GTSAC 1 cut(s) 488
TspDTI ATGAA 3 cut(s) 19, 118, 396
VpaK11BI GGWCC 1 cut(s) 82
VspI ATTAAT 1 cut(s) 512
XapI RAATTY 2 cut(s) 333, 423
XmiI GTMKAC 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.