FvH4_5g38692

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
28627348 .. 28628123
776 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38692.t1

Sequence Viewer

Length: 522 bp
ATGCTGAGACCTGGTCCTTTCTCTGGTTCTCCTTCTGCAGTGGTCCCTGCCTCAGTTGAGAGGGGGAATACTAGTAATGTCACTACTAGTTCTGATATTAGTAATGTTGCAAATCATGATGGAAGTGTTAGTACTGCAGTTAATTGTCAGAATCAAAATGAGAATCTAAATTTTGGAGTTGTAAATGGTGTTGATGGAGGAAACGGTTATACTGGAGGTGTTGATGGTGGTTTTGATGAAGGATGTGCTACAGGTGGTCATGATATTCCTATTGGTACTAATGATAGTTTACTTGCTTCTATTTTGCCTCAAGAAATTCAGTTTATCAATGATTCTGCTACTTCCTATAATAACCACTCTATGTTGACCCGTGCAAAGAATGAGATTTTTAAGAAGAAGAATTTTGATGATTTCTGTGCTTATTCTTGTATTGCACAACAAAATGTTCTTGATGAGTTGTCATTTTTTAGTGGCTTAACTTCTGTGCTTGATATCACTGATGCTTCCTGTTGTGAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

18.08

Weight (kDa)

4.2

Isoelectric Point (pI)

24.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 169, 315, 400
AfaI GTAC 2 cut(s) 133, 277
AfiI CCNNNNNNNGG 1 cut(s) 23
AhlI ACTAGT 2 cut(s) 71, 86
AjnI CCWGG 1 cut(s) 10
ApoI RAATTY 3 cut(s) 169, 315, 400
AspS9I GGNCC 2 cut(s) 14, 43
AvaII GGWCC 2 cut(s) 14, 43
BarI GAAGNNNNNNTAC 2 cut(s) 115, 147
BccI CCATC 3 cut(s) 113, 188, 218
BciT130I CCWGG 1 cut(s) 12
BcuI ACTAGT 2 cut(s) 71, 86
BfaI CTAG 2 cut(s) 72, 87
BfmI CTRYAG 3 cut(s) 36, 135, 249
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 2 cut(s) 14, 43
BmgT120I GGNCC 2 cut(s) 14, 43
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 65
BspHI TCATGA 2 cut(s) 115, 259
BspLI GGNNCC 1 cut(s) 45
BspMAI CTGCAG 2 cut(s) 40, 139
BsrI ACTGG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 206
BstDEI CTNAG 2 cut(s) 5, 52
BstF5I GGATG 1 cut(s) 248
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 3 cut(s) 36, 135, 249
BtsCI GGATG 1 cut(s) 248
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 495
CciI TCATGA 2 cut(s) 115, 259
Cfr13I GGNCC 2 cut(s) 14, 43
CsiI ACCWGGT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 132, 276
CviAII CATG 2 cut(s) 116, 260
CviJI RGCY 1 cut(s) 474
CviKI_1 RGCY 1 cut(s) 474
CviQI GTAC 2 cut(s) 132, 276
DdeI CTNAG 2 cut(s) 5, 52
Eco32I GATATC 1 cut(s) 493
Eco47I GGWCC 2 cut(s) 14, 43
EcoRII CCWGG 1 cut(s) 10
EcoRV GATATC 1 cut(s) 493
FaeI CATG 2 cut(s) 119, 263
FaiI YATR 6 cut(s) 117, 210, 261, 348, 362, 520
FaqI GGGAC 1 cut(s) 29
FatI CATG 2 cut(s) 115, 259
FokI GGATG 1 cut(s) 255
FspBI CTAG 2 cut(s) 72, 87
GsuI CTGGAG 1 cut(s) 234
Hin1II CATG 2 cut(s) 119, 263
HincII GTYRAC 1 cut(s) 366
HindII GTYRAC 1 cut(s) 366
HinfI GANTC 3 cut(s) 151, 163, 332
Hpy166II GTNNAC 2 cut(s) 290, 366
Hpy188I TCNGA 2 cut(s) 94, 150
Hpy188III TCNNGA 4 cut(s) 116, 260, 311, 449
Hpy8I GTNNAC 2 cut(s) 290, 366
HpyAV CCTTC 2 cut(s) 42, 233
HpyCH4III ACNGT 1 cut(s) 206
HpyCH4V TGCA 5 cut(s) 38, 110, 137, 374, 434
HpyF3I CTNAG 2 cut(s) 5, 52
Hsp92II CATG 2 cut(s) 119, 263
LpnPI CCDG 5 cut(s) 9, 24, 60, 198, 237
LweI GCATC 1 cut(s) 490
MabI ACCWGGT 1 cut(s) 10
MaeI CTAG 2 cut(s) 72, 87
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 2 cut(s) 406, 409
MluCI AATT 4 cut(s) 142, 169, 315, 400
MnlI CCTC 6 cut(s) 54, 61, 191, 209, 318, 508
MseI TTAA 3 cut(s) 141, 390, 476
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
NlaIII CATG 2 cut(s) 119, 263
NlaIV GGNNCC 1 cut(s) 45
NmuCI GTSAC 1 cut(s) 79
PagI TCATGA 2 cut(s) 115, 259
PfeI GAWTC 3 cut(s) 151, 163, 332
PflFI GACNNNGTC 1 cut(s) 12
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 14, 43
PstI CTGCAG 2 cut(s) 40, 139
PsyI GACNNNGTC 1 cut(s) 12
RsaI GTAC 2 cut(s) 133, 277
RsaNI GTAC 2 cut(s) 132, 276
SaqAI TTAA 3 cut(s) 141, 390, 476
Sau96I GGNCC 2 cut(s) 14, 43
ScaI AGTACT 1 cut(s) 133
ScrFI CCNGG 1 cut(s) 12
SetI ASST 3 cut(s) 13, 220, 256
SexAI ACCWGGT 1 cut(s) 10
SfaNI GCATC 1 cut(s) 490
SfcI CTRYAG 3 cut(s) 36, 135, 249
SinI GGWCC 2 cut(s) 14, 43
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
SpeI ACTAGT 2 cut(s) 71, 86
Sse9I AATT 4 cut(s) 142, 169, 315, 400
SspMI CTAG 2 cut(s) 72, 87
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 1 cut(s) 206
TasI AATT 4 cut(s) 142, 169, 315, 400
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 3 cut(s) 151, 163, 332
Tru1I TTAA 3 cut(s) 141, 390, 476
Tru9I TTAA 3 cut(s) 141, 390, 476
TscAI CASTG 2 cut(s) 45, 502
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 252
TspRI CASTG 2 cut(s) 45, 502
Tth111I GACNNNGTC 1 cut(s) 12
VpaK11BI GGWCC 2 cut(s) 14, 43
XapI RAATTY 3 cut(s) 169, 315, 400
XspI CTAG 2 cut(s) 72, 87
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.