Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Reverse (-)

5178749 .. 5180793

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGCTCCACCATCACTGATTGCTAACGGCGGTGCTGCCGGTGCTGAGTTAGTTCCAGCACCTGTCACCGGCCGATTCGTCTCCGTCTACAGCGAGGTCCAGGCCAGTCGTATCGACCATGTACTTCCTCTCCCTTCCGTGCTCAAAAAGCCCTTCAAGGTTGTCGACGGTCCCGCTAGCTCCGCCGCCGGCAATCCTGAGGAGATCGCGAAGTTGTTTCCTAATGTTTTCGGTCAGCCATCTGCACTGTTGGAGCCAAGCGATTCCGATTCGGGTCTACCGGAGCAGAAGTTGAAGATCGGTGTCGTTTTATCTGGAGGCCAAGCCCCCGGAGGACACAATGTGATATCTGGAATTTTCGATTACTTGCAAGACCGCGCCAAAGGAAGCACAATGTATGGTTTTAGGGGCGGGCCAGCTGGGATAATGAAAAACAAATACATCGAACTTACCCCCGAGTATATTTATCCATACAGAAATCAGGGTGGTTTCGATATGATTCGCAGTGGAAGGGACAAGATTGAATCTCCAGAGCAGTTTAAACAAGCACAAGAAACAGCTGTGAAGCTTGATTTGGATGGGCTTGTTGTTATCGGTGGAGATGACTCAAACACAAATGCCTGCCTCCTTGCTGAAAACTTCAGGTTGAAGAACTTGAAAACTCGTGTGATAGGTTGCCCCAAAACCATTGACGGTGACTTGAAATGCAAAGGGGTCCCCATAAGTTTTGGATTTGACACTGCTTGCAAGATATATGCAGAAATGATTGGCAATGTTATGACAGATGCCCGGTCAACTGGAAAATATTATCATTTTGTACGACTTATGGGGCGTGCGGCTTCACACATTACATTAGAATGTGCTTTGCAAACTCATCCAAACATTACAATTATTGGAGAAGAGGTACTTCAGTTATATTTTTCATCATATTCAATTTGCTCACATTGCTTTTTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

320

Amino Acids

34.42

Weight (kDa)

6.6

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PFK	PF00365	99 - 304	1.2e-34	Phosphofructokinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	87, 165, 277
AccII	CGCG	2 cut(s)	209, 378
AciI	CCGC	7 cut(s)	30, 174, 183, 186, 376, 411, 836
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	354
AcuI	CTGAAG	2 cut(s)	625, 893
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	3 cut(s)	123, 819, 906
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	7 cut(s)	157, 295, 524, 649, 658, 703, 933
AjnI	CCWGG	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AluBI	AGCT	4 cut(s)	180, 419, 560, 568
AluI	AGCT	4 cut(s)	180, 419, 560, 568
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	4 cut(s)	70, 102, 319, 413
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	380
AspS9I	GGNCC	4 cut(s)	97, 170, 413, 715
AsuC2I	CCSGG	2 cut(s)	330, 790
AsuHPI	GGTGA	2 cut(s)	58, 707
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	3 cut(s)	97, 170, 715
AxyI	CCTNAGG	1 cut(s)	198
BaeI	ACNNNNGTAYC	2 cut(s)	896, 929
BauI	CACGAG	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	19, 247, 572
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	2 cut(s)	330, 790
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	3 cut(s)	36, 186, 837
BlsI	GCNGC	3 cut(s)	37, 187, 838
Bme1390I	CCNGG	3 cut(s)	101, 330, 790
Bme18I	GGWCC	3 cut(s)	97, 170, 715
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	4 cut(s)	97, 170, 413, 715
BmiI	GGNNCC	5 cut(s)	6, 172, 255, 716, 717
BmrFI	CCNGG	3 cut(s)	101, 330, 790
BmsI	GCATC	1 cut(s)	775
BmtI	GCTAGC	1 cut(s)	180
BpmI	CTGGAG	2 cut(s)	336, 513
BpuMI	CCSGG	2 cut(s)	330, 790
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	280
BsaXI	ACNNNNNCTCC	6 cut(s)	114, 144, 275, 305, 888, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	3 cut(s)	38, 68, 188
Bse1I	ACTGG	2 cut(s)	105, 802
Bse21I	CCTNAGG	1 cut(s)	198
Bse3DI	GCAATG	2 cut(s)	778, 943
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	2 cut(s)	583, 874
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	2 cut(s)	778, 943
BseMII	CTCAG	2 cut(s)	36, 189
BseNI	ACTGG	2 cut(s)	105, 802
BseRI	GAGGAG	1 cut(s)	215
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	2 cut(s)	209, 378
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	4 cut(s)	72, 104, 321, 415
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	6 cut(s)	39, 69, 189, 281, 330, 790
BslFI	GGGAC	3 cut(s)	156, 527, 701
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsmFI	GGGAC	3 cut(s)	156, 527, 701
BsnI	GGCC	4 cut(s)	72, 104, 321, 415
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	204, 297
Bsp68I	TCGCGA	1 cut(s)	209
BspACI	CCGC	7 cut(s)	30, 174, 183, 186, 376, 411, 836
BspANI	GGCC	4 cut(s)	72, 104, 321, 415
BspCNI	CTCAG	2 cut(s)	37, 190
BspFNI	CGCG	2 cut(s)	209, 378
BspLI	GGNNCC	5 cut(s)	6, 172, 255, 716, 717
BspOI	GCTAGC	1 cut(s)	180
BsrDI	GCAATG	2 cut(s)	778, 943
BsrFI	RCCGGY	3 cut(s)	38, 68, 188
BsrI	ACTGG	2 cut(s)	105, 802
BssAI	RCCGGY	3 cut(s)	38, 68, 188
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	2 cut(s)	204, 297
BssSI	CACGAG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	101
Bst4CI	ACNGT	3 cut(s)	170, 249, 695
Bst6I	CTCTTC	1 cut(s)	894
BstC8I	GCNNGC	7 cut(s)	178, 190, 413, 417, 622, 745, 834
BstDEI	CTNAG	2 cut(s)	45, 198
BstF5I	GGATG	2 cut(s)	583, 874
BstFNI	CGCG	2 cut(s)	209, 378
BstHHI	GCGC	1 cut(s)	380
BstKTI	GATC	2 cut(s)	207, 300
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	2 cut(s)	204, 297
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 148, 182, 945
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	3 cut(s)	99, 328, 788
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	2 cut(s)	209, 378
BstV1I	GCAGC	1 cut(s)	22
BstZI	CGGCCG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	4 cut(s)	72, 104, 321, 415
BtsCI	GGATG	2 cut(s)	583, 874
BtsI	GCAGTG	2 cut(s)	511, 738
BtsIMutI	CAGTG	4 cut(s)	14, 245, 511, 738
BtuMI	TCGCGA	1 cut(s)	209
Cac8I	GCNNGC	7 cut(s)	178, 190, 413, 417, 622, 745, 834
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	380
Cfr10I	RCCGGY	3 cut(s)	38, 68, 188
Cfr13I	GGNCC	4 cut(s)	97, 170, 413, 715
Csp6I	GTAC	3 cut(s)	122, 818, 905
CviAII	CATG	1 cut(s)	119
CviQI	GTAC	3 cut(s)	122, 818, 905
DdeI	CTNAG	2 cut(s)	45, 198
DpnI	GATC	2 cut(s)	206, 299
DpnII	GATC	2 cut(s)	204, 297
DraI	TTTAAA	1 cut(s)	541
DraIII	CACNNNGTG	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	70
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
EciI	GGCGGA	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	348
Eco47I	GGWCC	3 cut(s)	97, 170, 715
Eco52I	CGGCCG	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	625, 893
Eco81I	CCTNAGG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	455
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	99
EcoRV	GATATC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	122
FalI	AAGNNNNNCTT	2 cut(s)	891, 923
FaqI	GGGAC	3 cut(s)	156, 527, 701
FatI	CATG	1 cut(s)	118
FauI	CCCGC	2 cut(s)	181, 404
FblI	GTMKAC	3 cut(s)	87, 165, 277
Fnu4HI	GCNGC	3 cut(s)	36, 186, 837
FokI	GGATG	2 cut(s)	590, 861
Fsp4HI	GCNGC	3 cut(s)	36, 186, 837
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	1 cut(s)	379
GluI	GCNGC	3 cut(s)	36, 186, 837
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	2 cut(s)	336, 513
HaeIII	GGCC	4 cut(s)	72, 104, 321, 415
HapII	CCGG	6 cut(s)	39, 69, 189, 281, 330, 790
HhaI	GCGC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	378
HinP1I	GCGC	1 cut(s)	378
HincII	GTYRAC	2 cut(s)	166, 795
HindII	GTYRAC	2 cut(s)	166, 795
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	6 cut(s)	75, 263, 269, 499, 524, 605
HpaII	CCGG	6 cut(s)	39, 69, 189, 281, 330, 790
HphI	GGTGA	2 cut(s)	58, 707
Hpy166II	GTNNAC	4 cut(s)	88, 166, 278, 795
Hpy188I	TCNGA	1 cut(s)	268
Hpy188III	TCNNGA	5 cut(s)	197, 208, 315, 351, 530
Hpy8I	GTNNAC	4 cut(s)	88, 166, 278, 795
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	3 cut(s)	144, 163, 504
HpyCH4III	ACNGT	3 cut(s)	170, 249, 695
HpyCH4V	TGCA	6 cut(s)	245, 370, 708, 747, 758, 868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 148, 182, 945
HpyF3I	CTNAG	2 cut(s)	45, 198
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	1 cut(s)	378
KflI	GGGWCCC	1 cut(s)	715
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	204, 297
LmnI	GCTCC	4 cut(s)	10, 185, 253, 283
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	775
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	64, 695
MalI	GATC	2 cut(s)	206, 299
MboI	GATC	2 cut(s)	204, 297
MboII	GAAGA	3 cut(s)	307, 661, 911
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	3 cut(s)	354, 888, 933
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	88, 138, 193, 311, 326, 635, 895
MroNI	GCCGGC	1 cut(s)	188
MseI	TTAA	2 cut(s)	540, 958
MslI	CAYNNNNRTG	1 cut(s)	856
MspA1I	CMGCKG	2 cut(s)	419, 560
MspI	CCGG	6 cut(s)	39, 69, 189, 281, 330, 790
MspR9I	CCNGG	3 cut(s)	101, 330, 790
MssI	GTTTAAAC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	209, 378
MwoI	GCNNNNNNNGC	4 cut(s)	41, 148, 182, 945
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	2 cut(s)	330, 790
NdeII	GATC	2 cut(s)	204, 297
NgoMIV	GCCGGC	1 cut(s)	188
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	5 cut(s)	6, 172, 255, 716, 717
NmuCI	GTSAC	2 cut(s)	64, 695
NruI	TCGCGA	1 cut(s)	209
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	5 cut(s)	75, 263, 269, 499, 524
PkrI	GCNGC	3 cut(s)	37, 187, 838
PleI	GAGTC	1 cut(s)	599
PmeI	GTTTAAAC	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	599
PpuMI	RGGWCCY	1 cut(s)	715
Psp5II	RGGWCCY	1 cut(s)	715
Psp6I	CCWGG	1 cut(s)	99
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	5 cut(s)	6, 172, 255, 716, 717
PspPI	GGNCC	4 cut(s)	97, 170, 413, 715
PspPPI	RGGWCCY	1 cut(s)	715
PstNI	CAGNNNCTG	1 cut(s)	62
PvuII	CAGCTG	2 cut(s)	419, 560
RruI	TCGCGA	1 cut(s)	209
RsaI	GTAC	3 cut(s)	123, 819, 906
RsaNI	GTAC	3 cut(s)	122, 818, 905
RseI	CAYNNNNRTG	1 cut(s)	856
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	540, 958
SatI	GCNGC	3 cut(s)	36, 186, 837
Sau3AI	GATC	2 cut(s)	204, 297
Sau96I	GGNCC	4 cut(s)	97, 170, 413, 715
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	3 cut(s)	101, 330, 790
SduI	GDGCHC	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	775
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	3 cut(s)	97, 170, 715
SmiMI	CAYNNNNRTG	1 cut(s)	856
Sse9I	AATT	3 cut(s)	354, 888, 933
SsiI	CCGC	7 cut(s)	30, 174, 183, 186, 376, 411, 836
SspI	AATATT	1 cut(s)	806
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	3 cut(s)	99, 328, 788
TaaI	ACNGT	3 cut(s)	170, 249, 695
TaqI	TCGA	5 cut(s)	114, 165, 360, 444, 492
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	3 cut(s)	354, 888, 933
TatI	WGTACW	1 cut(s)	121
TauI	GCSGC	2 cut(s)	188, 839
TfiI	GAWTC	5 cut(s)	75, 263, 269, 499, 524
Tru1I	TTAA	2 cut(s)	540, 958
Tru9I	TTAA	2 cut(s)	540, 958
TscAI	CASTG	4 cut(s)	21, 252, 511, 745
TseFI	GTSAC	2 cut(s)	64, 695
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	2 cut(s)	64, 695
TspDTI	ATGAA	2 cut(s)	443, 912
TspGWI	ACGGA	2 cut(s)	73, 127
TspRI	CASTG	4 cut(s)	21, 252, 511, 745
VpaK11BI	GGWCC	3 cut(s)	97, 170, 715
XapI	RAATTY	1 cut(s)	354
XmiI	GTMKAC	3 cut(s)	87, 165, 277
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.