pycom15g34000

Mitochondrial protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
33605650 .. 33606266
617 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g34000.2

Sequence Viewer

Length: 564 bp
ATGCTCCACCTCACCATTACCACAATCACCAGCTCCATTTTATCCTTCTGCACCATATGGTGTTGGATTCTTGGTAATTTTGGATCTCATTCTCGTACAAGGAACCAGAATTCAAACTCTGGCTTCAGATCTTTCAATGGTTTTAATCCCAAGGGTCATCACAATTATAGGTCAAATAATGGATACAAATGCAAGAATTTCAACTCTGGAGGTTATAGACAGAATTCAAATAATAGTAGTTGGTTTGGAAATACAAATACAAGAATGAGTGTGGTTATTGAATGTCAAATCTACAACAAGATAGGTCATATGGCAGCAAATTGCTTTCATCGAAATACCAATACCTCTTCAACTGGGTTTGTGGTGGAGTGCCAAATTTGTGGGAAAAGATGTCATGCCACACTTGACTACTATCAAATGAGCAATTATATATATCAAAGTCAACCACCACCATCATCAATGAATGCTCTCAATGCACAACAATCATCTCAATTCATGCCTTCTGATCATGGATTGTTGATTCTGGGGCTTCTCACCATACGACTGTTGATGTCAATGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

188

Amino Acids

21.13

Weight (kDa)

9.47

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 4 cut(s) 109, 196, 223, 375
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 6 cut(s) 114, 136, 202, 228, 281, 351
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
AlwI GGATC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 4 cut(s) 109, 196, 223, 375
AsuHPI GGTGA 3 cut(s) 4, 19, 526
BbvI GCAGC 1 cut(s) 326
BccI CCATC 1 cut(s) 460
BciVI GTATCC 1 cut(s) 176
BclI TGATCA 1 cut(s) 505
BfuI GTATCC 1 cut(s) 176
BglII AGATCT 1 cut(s) 128
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 104
BmrI ACTGGG 1 cut(s) 363
BmuI ACTGGG 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 150
BseNI ACTGG 1 cut(s) 358
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 34
BsmI GAATGC 1 cut(s) 469
Bsp143I GATC 3 cut(s) 83, 128, 505
BspLI GGNNCC 1 cut(s) 104
BspPI GGATC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 83, 128, 505
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 352
BstKTI GATC 3 cut(s) 86, 131, 508
BstMBI GATC 3 cut(s) 83, 128, 505
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 326
BstX2I RGATCY 2 cut(s) 83, 128
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 2 cut(s) 83, 128
BsuI GTATCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 96
CviAII CATG 3 cut(s) 395, 496, 509
CviJI RGCY 3 cut(s) 33, 123, 529
CviKI_1 RGCY 3 cut(s) 33, 123, 529
CviQI GTAC 1 cut(s) 96
DpnI GATC 3 cut(s) 85, 130, 507
DpnII GATC 3 cut(s) 83, 128, 505
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 109
EcoRI GAATTC 2 cut(s) 109, 223
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 3 cut(s) 398, 499, 512
FatI CATG 3 cut(s) 394, 495, 508
FauNDI CATATG 2 cut(s) 56, 309
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
GsuI CTGGAG 1 cut(s) 228
Hin1II CATG 3 cut(s) 398, 499, 512
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HinfI GANTC 2 cut(s) 67, 520
HphI GGTGA 3 cut(s) 4, 19, 526
Hpy166II GTNNAC 1 cut(s) 443
Hpy188I TCNGA 2 cut(s) 128, 505
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 55, 510
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4V TGCA 3 cut(s) 51, 192, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
Hsp92II CATG 3 cut(s) 398, 499, 512
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 3 cut(s) 83, 128, 505
LmnI GCTCC 2 cut(s) 9, 38
LpnPI CCDG 6 cut(s) 43, 105, 119, 192, 339, 509
Lsp1109I GCAGC 1 cut(s) 326
MalI GATC 3 cut(s) 85, 130, 507
MboI GATC 3 cut(s) 83, 128, 505
MboII GAAGA 1 cut(s) 339
MflI RGATCY 2 cut(s) 83, 128
MluCI AATT 9 cut(s) 76, 109, 163, 196, 223, 319, 375, 424, 491
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 3 cut(s) 20, 203, 355
MseI TTAA 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 469
MwoI GCNNNNNNNGC 1 cut(s) 473
NdeI CATATG 2 cut(s) 56, 309
NdeII GATC 3 cut(s) 83, 128, 505
NlaIII CATG 3 cut(s) 398, 499, 512
NlaIV GGNNCC 1 cut(s) 104
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 2 cut(s) 67, 520
PkrI GCNGC 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 104
PsuI RGATCY 2 cut(s) 83, 128
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 3 cut(s) 83, 128, 505
SetI ASST 6 cut(s) 12, 35, 173, 214, 307, 347
Sse9I AATT 9 cut(s) 76, 109, 163, 196, 223, 319, 375, 424, 491
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 546
TaqI TCGA 1 cut(s) 331
TasI AATT 9 cut(s) 76, 109, 163, 196, 223, 319, 375, 424, 491
TfiI GAWTC 2 cut(s) 67, 520
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 317, 476, 484
XapI RAATTY 4 cut(s) 109, 196, 223, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.