Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006008.1

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Forward (+)

31274 .. 34933

Gene Structure 3660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006008.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

atgatttgtagtggaagagacaagattgaaactccagagcagtttaagcaagcacaagagacagctgtgaagcttgatttggatggtctagttgtaattggaggagatgactcaaacacaaatgcgtgcctccttgctgaaaactttaagggactgaacttgaaaactcgggtgataggttgcccaaaaactattgatggtgatttgaaatgtaaagaggtccccacaagtttcgggtttgatacggcttgcaagatatattcagaaatgattggcaatgtcatgatagatgcccggtcaaccggaaaatattatcattttgtacggcttatggggcgtgcagcttcacacattacattagagtgtgctttgcaaactcatccaaatatcacaattattggagaagaggttgcggcaaagaagcagacactgaaaaatgtcacagactacattgtaaacataatcttgaagcgtgcggattttggttataactacggtgttatacttattcctgaaggtcttattgacttcattcctgaggtgcaggggcttattgctgaattgaatgaaattctggcccgtgatgttgtagatgaagatgggttgtggaaaaagaaactcacaagtcagtctctacagctttttgacttactacctgaagcaatccaggagcagttgatgctcgaaagggatcctcatggaaatgttcaggttgccaagatagaaacagagaagatgcttttccaaatggttgaggctgacttggcaaagaggaagcaggaaggcttataccatggccaattccaaggaaaatctcactttttcggttatgaaggaagatgtggtttaccaacaaactttgacgctaactactgctatgcattgggttatgctgctggagctctccttcatggtggaaaaactgggttgatatcatcggttaacaatttggctgctcctgttgaagaatggacagttggtggcaccgcgttgacttcattgatggacgtggagaggagacacggtaagttcaagcctgtgatcaagaaggcaatggtagaacttgaagctgcaccattcaagaaatttgcatctctgaggaacgagtgggctatcaagaatcgttacatcagtcctggtcccattcaatttttcggcccagcttccaattcccttagtcacactctaatcttggaactcgggctcgaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

404

Amino Acids

44.71

Weight (kDa)

5.92

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	489
AccB1I	GGYRCC	1 cut(s)	983
AccII	CGCG	1 cut(s)	989
AciI	CCGC	3 cut(s)	413, 476, 987
AclWI	GGATC	2 cut(s)	686, 699
AcoI	YGGCCR	1 cut(s)	796
AcsI	RAATTY	2 cut(s)	570, 1085
AcuI	CTGAAG	2 cut(s)	534, 678
AfaI	GTAC	1 cut(s)	324
AjiI	CACGTC	1 cut(s)	1009
AjnI	CCWGG	2 cut(s)	666, 1135
AjuI	GAANNNNNNNTTGG	4 cut(s)	62, 94, 960, 992
AluBI	AGCT	7 cut(s)	65, 73, 344, 640, 902, 1070, 1163
AluI	AGCT	7 cut(s)	65, 73, 344, 640, 902, 1070, 1163
Alw21I	GWGCWC	1 cut(s)	904
Alw26I	GTCTC	4 cut(s)	12, 53, 636, 1012
AlwI	GGATC	2 cut(s)	686, 699
AlwNI	CAGNNNCTG	1 cut(s)	430
Ama87I	CYCGRG	2 cut(s)	168, 1199
AoxI	GGCC	3 cut(s)	576, 796, 1156
ApeKI	GCWGC	4 cut(s)	341, 893, 953, 1070
ApoI	RAATTY	2 cut(s)	570, 1085
AspS9I	GGNCC	4 cut(s)	220, 577, 1139, 1157
AsuC2I	CCSGG	1 cut(s)	295
AsuHPI	GGTGA	2 cut(s)	184, 212
AvaI	CYCGRG	2 cut(s)	168, 1199
AvaII	GGWCC	2 cut(s)	220, 1139
AxyI	CCTNAGG	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	798
BamHI	GGATCC	1 cut(s)	691
BanI	GGYRCC	1 cut(s)	983
BanII	GRGCYC	2 cut(s)	904, 1206
Bbv12I	GWGCWC	1 cut(s)	904
BbvI	GCAGC	4 cut(s)	353, 880, 940, 1057
BccI	CCATC	4 cut(s)	77, 191, 593, 997
BceAI	ACGGC	2 cut(s)	261, 341
BciT130I	CCWGG	2 cut(s)	668, 1137
BclI	TGATCA	1 cut(s)	1041
BcnI	CCSGG	1 cut(s)	295
BcoDI	GTCTC	4 cut(s)	12, 53, 636, 1012
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	635
BisI	GCNGC	5 cut(s)	342, 414, 894, 954, 1071
BlsI	GCNGC	5 cut(s)	343, 415, 895, 955, 1072
Bme1390I	CCNGG	3 cut(s)	295, 668, 1137
Bme18I	GGWCC	2 cut(s)	220, 1139
BmeT110I	CYCGRG	2 cut(s)	168, 1199
BmgBI	CACGTC	1 cut(s)	1009
BmgT120I	GGNCC	4 cut(s)	220, 577, 1139, 1157
BmiI	GGNNCC	4 cut(s)	222, 693, 985, 1141
BmrFI	CCNGG	3 cut(s)	295, 668, 1137
BmrI	ACTGGG	1 cut(s)	933
BmsI	GCATC	4 cut(s)	280, 669, 726, 1100
BmuI	ACTGGG	1 cut(s)	933
BpmI	CTGGAG	2 cut(s)	18, 918
BpuMI	CCSGG	1 cut(s)	295
BsaJI	CCNNGG	2 cut(s)	793, 805
BsaWI	WCCGGW	1 cut(s)	302
BsaXI	ACNNNNNCTCC	4 cut(s)	393, 423, 1009, 1039
Bse1I	ACTGG	1 cut(s)	928
Bse21I	CCTNAGG	1 cut(s)	537
Bse3DI	GCAATG	2 cut(s)	283, 1059
BseBI	CCWGG	2 cut(s)	668, 1137
BseDI	CCNNGG	2 cut(s)	793, 805
BseGI	GGATG	2 cut(s)	88, 379
BseMI	GCAATG	2 cut(s)	283, 1059
BseMII	CTCAG	2 cut(s)	528, 1088
BseNI	ACTGG	1 cut(s)	928
BseRI	GAGGAG	2 cut(s)	117, 1030
BseXI	GCAGC	4 cut(s)	353, 880, 940, 1057
BseYI	CCCAGC	1 cut(s)	1159
BsgI	GTGCAG	3 cut(s)	360, 563, 1056
Bsh1236I	CGCG	1 cut(s)	989
BshFI	GGCC	3 cut(s)	578, 798, 1158
BshNI	GGYRCC	1 cut(s)	983
BsiHKAI	GWGCWC	1 cut(s)	904
BsiHKCI	CYCGRG	2 cut(s)	168, 1199
BsiSI	CCGG	2 cut(s)	295, 303
BslFI	GGGAC	3 cut(s)	165, 206, 1125
BsmAI	GTCTC	4 cut(s)	12, 53, 636, 1012
BsmFI	GGGAC	3 cut(s)	165, 206, 1125
BsnI	GGCC	3 cut(s)	578, 798, 1158
BsoBI	CYCGRG	2 cut(s)	168, 1199
Bsp1286I	GDGCHC	2 cut(s)	904, 1206
Bsp143I	GATC	2 cut(s)	691, 1041
Bsp19I	CCATGG	1 cut(s)	793
BspACI	CCGC	3 cut(s)	413, 476, 987
BspANI	GGCC	3 cut(s)	578, 798, 1158
BspCNI	CTCAG	2 cut(s)	529, 1089
BspFNI	CGCG	1 cut(s)	989
BspHI	TCATGA	1 cut(s)	282
BspLI	GGNNCC	4 cut(s)	222, 693, 985, 1141
BspPI	GGATC	2 cut(s)	686, 699
BspT107I	GGYRCC	1 cut(s)	983
BsrDI	GCAATG	2 cut(s)	283, 1059
BsrI	ACTGG	1 cut(s)	928
BssECI	CCNNGG	2 cut(s)	793, 805
BssMI	GATC	2 cut(s)	691, 1041
BssT1I	CCWWGG	2 cut(s)	793, 805
Bst2UI	CCWGG	2 cut(s)	668, 1137
Bst4CI	ACNGT	3 cut(s)	497, 976, 1025
Bst6I	CTCTTC	2 cut(s)	10, 399
BstAPI	GCANNNNNTGC	1 cut(s)	679
BstC8I	GCNNGC	5 cut(s)	51, 127, 250, 339, 474
BstDEI	CTNAG	3 cut(s)	537, 1097, 1175
BstDSI	CCRYGG	1 cut(s)	793
BstF5I	GGATG	2 cut(s)	88, 379
BstFNI	CGCG	1 cut(s)	989
BstKTI	GATC	2 cut(s)	694, 1044
BstMAI	GTCTC	4 cut(s)	12, 53, 636, 1012
BstMBI	GATC	2 cut(s)	691, 1041
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 334, 679, 764, 899
BstNI	CCWGG	2 cut(s)	668, 1137
BstSCI	CCNGG	3 cut(s)	293, 666, 1135
BstSFI	CTRYAG	1 cut(s)	635
BstUI	CGCG	1 cut(s)	989
BstV1I	GCAGC	4 cut(s)	353, 880, 940, 1057
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
Bsu36I	CCTNAGG	1 cut(s)	537
BsuRI	GGCC	3 cut(s)	578, 798, 1158
BtgI	CCRYGG	1 cut(s)	793
BtrI	CACGTC	1 cut(s)	1009
BtsCI	GGATG	2 cut(s)	88, 379
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	5 cut(s)	51, 127, 250, 339, 474
CaiI	CAGNNNCTG	1 cut(s)	430
CciI	TCATGA	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	220, 577, 1139, 1157
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	1 cut(s)	323
CviAII	CATG	4 cut(s)	283, 698, 794, 911
CviQI	GTAC	1 cut(s)	323
DdeI	CTNAG	3 cut(s)	537, 1097, 1175
DpnI	GATC	2 cut(s)	693, 1043
DpnII	GATC	2 cut(s)	691, 1041
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	2 cut(s)	10, 399
EarI	CTCTTC	2 cut(s)	10, 399
Ecl136II	GAGCTC	1 cut(s)	902
Eco130I	CCWWGG	2 cut(s)	793, 805
Eco24I	GRGCYC	2 cut(s)	904, 1206
Eco32I	GATATC	1 cut(s)	933
Eco47I	GGWCC	2 cut(s)	220, 1139
Eco53kI	GAGCTC	1 cut(s)	902
Eco57I	CTGAAG	2 cut(s)	534, 678
Eco81I	CCTNAGG	1 cut(s)	537
Eco88I	CYCGRG	2 cut(s)	168, 1199
EcoICRI	GAGCTC	1 cut(s)	902
EcoO109I	RGGNCCY	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	666, 1135
EcoRV	GATATC	1 cut(s)	933
EcoT14I	CCWWGG	2 cut(s)	793, 805
EcoT22I	ATGCAT	1 cut(s)	883
EcoT38I	GRGCYC	2 cut(s)	904, 1206
ErhI	CCWWGG	2 cut(s)	793, 805
FaeI	CATG	4 cut(s)	286, 701, 797, 914
FaqI	GGGAC	3 cut(s)	165, 206, 1125
FatI	CATG	4 cut(s)	282, 697, 793, 910
FbaI	TGATCA	1 cut(s)	1041
Fnu4HI	GCNGC	5 cut(s)	342, 414, 894, 954, 1071
FokI	GGATG	2 cut(s)	95, 366
FriOI	GRGCYC	2 cut(s)	904, 1206
Fsp4HI	GCNGC	5 cut(s)	342, 414, 894, 954, 1071
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	5 cut(s)	342, 414, 894, 954, 1071
GsaI	CCCAGC	1 cut(s)	1163
GsuI	CTGGAG	2 cut(s)	18, 918
HaeIII	GGCC	3 cut(s)	578, 798, 1158
HapII	CCGG	2 cut(s)	295, 303
HgaI	GACGC	1 cut(s)	872
Hin1II	CATG	4 cut(s)	286, 701, 797, 914
HincII	GTYRAC	3 cut(s)	300, 943, 993
HindII	GTYRAC	3 cut(s)	300, 943, 993
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	2 cut(s)	110, 1120
HpaI	GTTAAC	1 cut(s)	943
HpaII	CCGG	2 cut(s)	295, 303
HphI	GGTGA	2 cut(s)	184, 212
Hpy166II	GTNNAC	5 cut(s)	300, 457, 848, 943, 993
Hpy188I	TCNGA	2 cut(s)	265, 1098
Hpy188III	TCNNGA	8 cut(s)	35, 283, 466, 512, 536, 1045, 1081, 1117
Hpy8I	GTNNAC	5 cut(s)	300, 457, 848, 943, 993
HpyAV	CCTTC	5 cut(s)	509, 776, 827, 917, 1042
HpyCH4III	ACNGT	3 cut(s)	497, 976, 1025
HpyCH4IV	ACGT	1 cut(s)	1008
HpyCH4V	TGCA	7 cut(s)	252, 341, 373, 544, 881, 1073, 1091
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 334, 679, 764, 899
HpyF3I	CTNAG	3 cut(s)	537, 1097, 1175
HpySE526I	ACGT	1 cut(s)	1008
Hsp92II	CATG	4 cut(s)	286, 701, 797, 914
Ksp22I	TGATCA	1 cut(s)	1041
KspAI	GTTAAC	1 cut(s)	943
Kzo9I	GATC	2 cut(s)	691, 1041
LmnI	GCTCC	3 cut(s)	670, 899, 961
Lsp1109I	GCAGC	4 cut(s)	353, 880, 940, 1057
LweI	GCATC	4 cut(s)	280, 669, 726, 1100
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	1008
MaeIII	GTNAC	3 cut(s)	439, 1124, 1178
MalI	GATC	2 cut(s)	693, 1043
MboI	GATC	2 cut(s)	691, 1041
MboII	GAAGA	6 cut(s)	27, 416, 608, 745, 849, 977
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	904, 1206
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	9 cut(s)	96, 393, 560, 570, 800, 946, 1085, 1148, 1168
MluNI	TGGCCA	1 cut(s)	798
MlyI	GAGTC	1 cut(s)	104
Mox20I	TGGCCA	1 cut(s)	798
Mph1103I	ATGCAT	1 cut(s)	883
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	4 cut(s)	45, 147, 942, 1213
MslI	CAYNNNNRTG	2 cut(s)	361, 702
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	1 cut(s)	65
MspI	CCGG	2 cut(s)	295, 303
MspR9I	CCNGG	3 cut(s)	295, 668, 1137
MvaI	CCWGG	2 cut(s)	668, 1137
MvnI	CGCG	1 cut(s)	989
MwoI	GCNNNNNNNGC	5 cut(s)	46, 334, 679, 764, 899
NciI	CCSGG	1 cut(s)	295
NcoI	CCATGG	1 cut(s)	793
NdeII	GATC	2 cut(s)	691, 1041
NlaIII	CATG	4 cut(s)	286, 701, 797, 914
NlaIV	GGNNCC	4 cut(s)	222, 693, 985, 1141
NmuCI	GTSAC	2 cut(s)	439, 1178
NsiI	ATGCAT	1 cut(s)	883
PagI	TCATGA	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	1120
PfoI	TCCNGGA	1 cut(s)	666
PkrI	GCNGC	5 cut(s)	343, 415, 895, 955, 1072
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PpuMI	RGGWCCY	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	904
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	666, 1135
PspFI	CCCAGC	1 cut(s)	1159
PspGI	CCWGG	2 cut(s)	666, 1135
PspN4I	GGNNCC	4 cut(s)	222, 693, 985, 1141
PspPI	GGNCC	4 cut(s)	220, 577, 1139, 1157
PspPPI	RGGWCCY	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	65
RsaI	GTAC	1 cut(s)	324
RsaNI	GTAC	1 cut(s)	323
RseI	CAYNNNNRTG	2 cut(s)	361, 702
SacI	GAGCTC	1 cut(s)	904
SaqAI	TTAA	4 cut(s)	45, 147, 942, 1213
SatI	GCNGC	5 cut(s)	342, 414, 894, 954, 1071
Sau3AI	GATC	2 cut(s)	691, 1041
Sau96I	GGNCC	4 cut(s)	220, 577, 1139, 1157
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	3 cut(s)	295, 668, 1137
SduI	GDGCHC	2 cut(s)	904, 1206
SfaNI	GCATC	4 cut(s)	280, 669, 726, 1100
SfcI	CTRYAG	1 cut(s)	635
SinI	GGWCC	2 cut(s)	220, 1139
SmiMI	CAYNNNNRTG	2 cut(s)	361, 702
Sse9I	AATT	9 cut(s)	96, 393, 560, 570, 800, 946, 1085, 1148, 1168
SsiI	CCGC	3 cut(s)	413, 476, 987
SspI	AATATT	1 cut(s)	311
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	904
StyD4I	CCNGG	3 cut(s)	293, 666, 1135
StyI	CCWWGG	2 cut(s)	793, 805
TaaI	ACNGT	3 cut(s)	497, 976, 1025
TaiI	ACGT	1 cut(s)	1011
TaqI	TCGA	2 cut(s)	684, 1206
TasI	AATT	9 cut(s)	96, 393, 560, 570, 800, 946, 1085, 1148, 1168
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	1120
Tru1I	TTAA	4 cut(s)	45, 147, 942, 1213
Tru9I	TTAA	4 cut(s)	45, 147, 942, 1213
TscAI	CASTG	1 cut(s)	435
TseFI	GTSAC	2 cut(s)	439, 1178
TseI	GCWGC	4 cut(s)	341, 893, 953, 1070
Tsp45I	GTSAC	2 cut(s)	439, 1178
TspDTI	ATGAA	6 cut(s)	520, 582, 609, 846, 899, 987
TspRI	CASTG	1 cut(s)	435
VpaK11BI	GGWCC	2 cut(s)	220, 1139
XapI	RAATTY	2 cut(s)	570, 1085
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.