Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Forward (+)

92225449 .. 92234241

Gene Structure 8793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00071370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTATGGTTTCAGAGGTGGACCTGCTGGTATCATGAAATGCAAATACGTTGAGCTTACACCGGAGTATGTTTATCCATACAGAAATCAGGGTGGTTTTGATATGATTTGTAGTGGAAGAGACAAGATTGAAACTCCAGAGCAGTTTAAGCAAGCACAAGAGACAGCTCTGAAGCTTGAGTTGGATGGTCTTGTTGTTATTGGAGGTGATGACTCAAACACAAATGCGTGCCTCCTTGCTGAAAACTTTAAGGGACTGAACTTGAAAACTCGGGTGATAGGTTGCCCAAAAACTATTGATGGTGATTTGAAATGTAAAGAGGTCCCCACAAGTTTCGGGTTCGATACGGCTTGCAAGATGAAGATGGGTTGTGGAAAAAAGAAACTCACAAGTCAGTCTCTACAGCTTTTTGACTTGCTACCTGAAGCAATCCAGGATCAGTTGATGCTCGAAAGGGATCCTCATGGAAATGTTCAGGTTGCCAAGATAGAAACAGAGAAGATGCTTTTCCAAATGGTTGAGGCTGACTTGGCAAAGAGGAAGCAGGAAGGCTCATACCATGGCCAATTCCAAGGAAAATCTCACTTTTTCGGCATCCCGGCCACCACCACCATATCATACCAGAAGAAGAGAAATCATGGTTTGCAAGTCTACACACCAAGTAAAGCCAGTGGGGCTTTTAGCAGGGAGCTTAAATTGCTGAACTCCTTAGTTGAGGCTGTTCACACTTCGCACGCATTTAGGTGGGAATCCAGAATCACCTCCGGGCATCAACAAGTAGCTGTTGCCATTAGACATGTGAGAGATTATTGGAATAACCAGACACGACCATTGGTGGAACATAAACCGTCGATATGGCATAATATGAAGGAAAATTTCGCAAACAAGTACACCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

299

Amino Acids

33.81

Weight (kDa)

9.09

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PFK	PF00365	1 - 122	2.7e-17	Phosphofructokinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	31
AccI	GTMKAC	1 cut(s)	651
AclWI	GGATC	3 cut(s)	444, 452, 465
AcoI	YGGCCR	2 cut(s)	562, 600
AcsI	RAATTY	1 cut(s)	874
AcuI	CTGAAG	2 cut(s)	191, 444
AfaI	GTAC	1 cut(s)	890
AflIII	ACRYGT	1 cut(s)	796
AgsI	TTSAA	3 cut(s)	131, 265, 310
AjnI	CCWGG	1 cut(s)	432
AjuI	GAANNNNNNNTTGG	2 cut(s)	164, 196
AluBI	AGCT	6 cut(s)	55, 167, 175, 406, 691, 782
AluI	AGCT	6 cut(s)	55, 167, 175, 406, 691, 782
Alw26I	GTCTC	3 cut(s)	114, 155, 402
AlwI	GGATC	3 cut(s)	444, 452, 465
Ama87I	CYCGRG	1 cut(s)	270
AoxI	GGCC	2 cut(s)	562, 600
ApoI	RAATTY	1 cut(s)	874
AspS9I	GGNCC	2 cut(s)	20, 322
AsuC2I	CCSGG	2 cut(s)	599, 766
AsuHPI	GGTGA	4 cut(s)	218, 286, 314, 751
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	2 cut(s)	20, 322
BalI	TGGCCA	1 cut(s)	564
BamHI	GGATCC	1 cut(s)	457
BccI	CCATC	3 cut(s)	179, 293, 358
BceAI	ACGGC	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	434
BcnI	CCSGG	2 cut(s)	599, 766
BcoDI	GTCTC	3 cut(s)	114, 155, 402
BfmI	CTRYAG	1 cut(s)	401
BfuAI	ACCTGC	1 cut(s)	31
BglI	GCCNNNNNGGC	1 cut(s)	674
Bme1390I	CCNGG	3 cut(s)	434, 599, 766
Bme18I	GGWCC	2 cut(s)	20, 322
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	20, 322
BmiI	GGNNCC	2 cut(s)	324, 459
BmrFI	CCNGG	3 cut(s)	434, 599, 766
BmsI	GCATC	4 cut(s)	435, 492, 603, 778
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	2 cut(s)	599, 766
BsaJI	CCNNGG	2 cut(s)	559, 571
BsaWI	WCCGGW	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	669
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	559, 571
BseGI	GGATG	2 cut(s)	190, 594
BseNI	ACTGG	1 cut(s)	669
BshFI	GGCC	2 cut(s)	564, 602
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	3 cut(s)	62, 599, 765
BslFI	GGGAC	2 cut(s)	267, 308
BsmAI	GTCTC	3 cut(s)	114, 155, 402
BsmFI	GGGAC	2 cut(s)	267, 308
BsnI	GGCC	2 cut(s)	564, 602
BsoBI	CYCGRG	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	436, 457
Bsp19I	CCATGG	1 cut(s)	559
BspANI	GGCC	2 cut(s)	564, 602
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	324, 459
BspMI	ACCTGC	1 cut(s)	31
BspPI	GGATC	3 cut(s)	444, 452, 465
BsrI	ACTGG	1 cut(s)	669
BssECI	CCNNGG	2 cut(s)	559, 571
BssMI	GATC	2 cut(s)	436, 457
BssT1I	CCWWGG	2 cut(s)	559, 571
Bst2UI	CCWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	849
Bst6I	CTCTTC	2 cut(s)	112, 623
BstC8I	GCNNGC	4 cut(s)	153, 229, 352, 735
BstDEI	CTNAG	1 cut(s)	709
BstDSI	CCRYGG	1 cut(s)	559
BstF5I	GGATG	2 cut(s)	190, 594
BstKTI	GATC	2 cut(s)	439, 460
BstMAI	GTCTC	3 cut(s)	114, 155, 402
BstMBI	GATC	2 cut(s)	436, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	148, 530, 674, 697
BstNI	CCWGG	1 cut(s)	434
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	3 cut(s)	432, 597, 764
BstSFI	CTRYAG	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	564, 602
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	190, 594
BtsIMutI	CAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	31
Cac8I	GCNNGC	4 cut(s)	153, 229, 352, 735
CciI	TCATGA	1 cut(s)	33
Cfr13I	GGNCC	2 cut(s)	20, 322
Csp6I	GTAC	1 cut(s)	889
CviAII	CATG	5 cut(s)	34, 464, 560, 638, 797
CviQI	GTAC	1 cut(s)	889
DdeI	CTNAG	1 cut(s)	709
DpnI	GATC	2 cut(s)	438, 459
DpnII	GATC	2 cut(s)	436, 457
EaeI	YGGCCR	2 cut(s)	562, 600
Eam1104I	CTCTTC	2 cut(s)	112, 623
EarI	CTCTTC	2 cut(s)	112, 623
Eco130I	CCWWGG	2 cut(s)	559, 571
Eco47I	GGWCC	2 cut(s)	20, 322
Eco57I	CTGAAG	2 cut(s)	191, 444
Eco88I	CYCGRG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	559, 571
ErhI	CCWWGG	2 cut(s)	559, 571
FaeI	CATG	5 cut(s)	37, 467, 563, 641, 800
FaqI	GGGAC	2 cut(s)	267, 308
FatI	CATG	5 cut(s)	33, 463, 559, 637, 796
FblI	GTMKAC	1 cut(s)	651
FokI	GGATG	2 cut(s)	197, 581
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	564, 602
HapII	CCGG	3 cut(s)	62, 599, 765
Hin1II	CATG	5 cut(s)	37, 467, 563, 641, 800
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	212, 749, 756
HpaII	CCGG	3 cut(s)	62, 599, 765
HphI	GGTGA	4 cut(s)	218, 286, 314, 751
Hpy166II	GTNNAC	4 cut(s)	20, 652, 724, 891
Hpy188I	TCNGA	2 cut(s)	14, 171
Hpy188III	TCNNGA	3 cut(s)	34, 137, 753
Hpy8I	GTNNAC	4 cut(s)	20, 652, 724, 891
Hpy99I	CGWCG	1 cut(s)	853
HpyAV	CCTTC	2 cut(s)	542, 862
HpyCH4III	ACNGT	1 cut(s)	849
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	42, 354, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	148, 530, 674, 697
HpyF3I	CTNAG	1 cut(s)	709
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	37, 467, 563, 641, 800
Kzo9I	GATC	2 cut(s)	436, 457
LmnI	GCTCC	1 cut(s)	688
LweI	GCATC	4 cut(s)	435, 492, 603, 778
MaeII	ACGT	1 cut(s)	48
MalI	GATC	2 cut(s)	438, 459
MboI	GATC	2 cut(s)	436, 457
MboII	GAAGA	5 cut(s)	129, 373, 511, 637, 640
MflI	RGATCY	1 cut(s)	457
MlsI	TGGCCA	1 cut(s)	564
MluCI	AATT	3 cut(s)	566, 695, 874
MluNI	TGGCCA	1 cut(s)	564
MlyI	GAGTC	1 cut(s)	206
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	9 cut(s)	8, 197, 242, 313, 471, 514, 531, 709, 772
Mox20I	TGGCCA	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	564
MseI	TTAA	3 cut(s)	147, 249, 693
MslI	CAYNNNNRTG	2 cut(s)	468, 742
Msp20I	TGGCCA	1 cut(s)	564
MspI	CCGG	3 cut(s)	62, 599, 765
MspR9I	CCNGG	3 cut(s)	434, 599, 766
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	4 cut(s)	148, 530, 674, 697
NciI	CCSGG	2 cut(s)	599, 766
NcoI	CCATGG	1 cut(s)	559
NdeII	GATC	2 cut(s)	436, 457
NlaIII	CATG	5 cut(s)	37, 467, 563, 641, 800
NlaIV	GGNNCC	2 cut(s)	324, 459
NspI	RCATGY	1 cut(s)	800
PagI	TCATGA	1 cut(s)	33
PciI	ACATGT	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	749, 756
PfoI	TCCNGGA	1 cut(s)	432
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	322
PscI	ACATGT	1 cut(s)	796
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	2 cut(s)	324, 459
PspPI	GGNCC	2 cut(s)	20, 322
PspPPI	RGGWCCY	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	890
RsaNI	GTAC	1 cut(s)	889
RseI	CAYNNNNRTG	2 cut(s)	468, 742
SaqAI	TTAA	3 cut(s)	147, 249, 693
Sau3AI	GATC	2 cut(s)	436, 457
Sau96I	GGNCC	2 cut(s)	20, 322
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	3 cut(s)	434, 599, 766
SfaNI	GCATC	4 cut(s)	435, 492, 603, 778
SfcI	CTRYAG	1 cut(s)	401
SinI	GGWCC	2 cut(s)	20, 322
SmiMI	CAYNNNNRTG	2 cut(s)	468, 742
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	566, 695, 874
StyD4I	CCNGG	3 cut(s)	432, 597, 764
StyI	CCWWGG	2 cut(s)	559, 571
TaaI	ACNGT	1 cut(s)	849
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	342, 450, 851
TasI	AATT	3 cut(s)	566, 695, 874
TatI	WGTACW	1 cut(s)	888
TfiI	GAWTC	2 cut(s)	749, 756
Tru1I	TTAA	3 cut(s)	147, 249, 693
Tru9I	TTAA	3 cut(s)	147, 249, 693
TscAI	CASTG	1 cut(s)	676
TspDTI	ATGAA	3 cut(s)	50, 374, 881
TspRI	CASTG	1 cut(s)	676
VpaK11BI	GGWCC	2 cut(s)	20, 322
XapI	RAATTY	1 cut(s)	874
XceI	RCATGY	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.