pycom01g09830

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001357
Physical Location & Seq
Forward (+)
10632288 .. 10632710
423 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09830.1

Sequence Viewer

Length: 423 bp
ATGCCCTCACAGCTCCACCTCAGCCCTCTTCTCCAATGCCTCAGCAAGTTCAATTGCAGCCACCGCCTTCATATGGTCATGGCTATGGATATACTGGCAGTGCACCTTCAAACTTTAATTCTGGTTCACGATCTTATACTAATCAGAGAGGAAATTCAGGACAACAAAGAGGTGGATACAGGTCCTTTTACAACAGGGAAAGGAATTATTCCTTCTGGGAATACCAATACAAGACAGAATACGCAACCAGAGTGTCAAATTTGCCAAATGAGGGGTCACACAACTCCAAACTGTTTTTACAGGAGTCCCAATTCCAATTCTAACATCCAGGAGTGTCAAATCTATGACAAACGTGGTCACATTTCTTTGGACTTTTCATTCTTAAATGTTAATATCAATTGTCACTTGGTGTTATTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

141

Amino Acids

15.93

Weight (kDa)

6.68

Isoelectric Point (pI)

58.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 153, 258
AdeI CACNNNGTG 1 cut(s) 409
AfiI CCNNNNNNNGG 2 cut(s) 73, 271
AgsI TTSAA 2 cut(s) 52, 110
AjnI CCWGG 1 cut(s) 327
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw21I GWGCWC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 101
ApaLI GTGCAC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 2 cut(s) 153, 258
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
AseI ATTAAT 1 cut(s) 416
AspS9I GGNCC 1 cut(s) 182
AvaII GGWCC 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvCI CCTCAGC 2 cut(s) 20, 41
BbvI GCAGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 329
BciVI GTATCC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 329
Bme18I GGWCC 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 329
Bpu10I CCTNAGC 2 cut(s) 20, 41
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 271
Bse1I ACTGG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 329
BseGI GGATG 1 cut(s) 324
BseLI CCNNNNNNNGG 2 cut(s) 73, 271
BseMII CTCAG 2 cut(s) 34, 55
BseNI ACTGG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 105
BseXI GCAGC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 105
BslFI GGGAC 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 73, 271
BsmFI GGGAC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 33, 54
BsrI ACTGG 1 cut(s) 99
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 20, 41
BstF5I GGATG 1 cut(s) 324
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 2 cut(s) 10, 63
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BstSLI GKGCMC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 69
BsuI GTATCC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 182
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 13, 24, 60, 83
CviKI_1 RGCY 4 cut(s) 13, 24, 60, 83
DdeI CTNAG 2 cut(s) 20, 41
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
DraIII CACNNNGTG 1 cut(s) 409
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 182
EcoRII CCWGG 1 cut(s) 327
FaeI CATG 1 cut(s) 82
FaiI YATR 7 cut(s) 72, 74, 80, 86, 92, 137, 345
FaqI GGGAC 1 cut(s) 291
FatI CATG 1 cut(s) 78
FauNDI CATATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 304
Hpy166II GTNNAC 2 cut(s) 103, 127
Hpy188I TCNGA 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 128, 158
Hpy8I GTNNAC 2 cut(s) 103, 127
HpyAV CCTTC 3 cut(s) 77, 116, 222
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 2 cut(s) 57, 103
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 63
HpyF3I CTNAG 2 cut(s) 20, 41
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 82
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 1 cut(s) 18
Lsp1109I GCAGC 1 cut(s) 69
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 3 cut(s) 275, 356, 401
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 20
MfeI CAATTG 2 cut(s) 52, 397
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 9 cut(s) 52, 117, 153, 204, 258, 310, 316, 397, 417
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 7 cut(s) 16, 29, 36, 50, 142, 163, 264
MseI TTAA 5 cut(s) 116, 383, 390, 416, 421
MslI CAYNNNNRTG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 2 cut(s) 52, 397
MvaI CCWGG 1 cut(s) 329
MwoI GCNNNNNNNGC 2 cut(s) 10, 63
NdeI CATATG 1 cut(s) 72
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 3 cut(s) 275, 356, 401
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 1 cut(s) 59
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
PpuMI RGGWCCY 1 cut(s) 182
PshBI ATTAAT 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PspPI GGNCC 1 cut(s) 182
PspPPI RGGWCCY 1 cut(s) 182
RseI CAYNNNNRTG 1 cut(s) 83
SaqAI TTAA 5 cut(s) 116, 383, 390, 416, 421
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 15, 21, 108, 174, 184, 355
SinI GGWCC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 83
Sse9I AATT 9 cut(s) 52, 117, 153, 204, 258, 310, 316, 397, 417
SsiI CCGC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 355
TasI AATT 9 cut(s) 52, 117, 153, 204, 258, 310, 316, 397, 417
Tru1I TTAA 5 cut(s) 116, 383, 390, 416, 421
Tru9I TTAA 5 cut(s) 116, 383, 390, 416, 421
TscAI CASTG 1 cut(s) 105
TseFI GTSAC 3 cut(s) 275, 356, 401
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 3 cut(s) 275, 356, 401
TspDTI ATGAA 2 cut(s) 59, 366
TspRI CASTG 1 cut(s) 105
VneI GTGCAC 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 416
XapI RAATTY 2 cut(s) 153, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.