Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8429625.1

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 877

Gene Structure 877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8429625.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgagtccctcattggttgcaaacggcggcgcttcgtctccggcgccggtctccggccgcgtctcctccgtttacagcgaggtccagtcgagccgtatcgaccatgagcttcctctcccctcggtgctcaaaaagccgttcaagctcgtcgacggacctgctagctccgccgccggcaatccagaggagatcgcgaagctgtttcccaatgttttcggtcagccttcttcacagttggtggagtgtgattccagtgcagagctgccgaaccagaagttgaagattggtgtggtgttgtctggaggccaagcacctggaggtcacaatgtgatttctggaatttttgattacttgcaagatcgcgccaaagggagcacgatgtatggtttcaaaggtggacctgctggtatcatgaaatgcaaatacgttgagcttacaccggagtatgtttatccatacagaaatcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

156

Amino Acids

16.44

Weight (kDa)

7.74

Isoelectric Point (pI)

58.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	166, 409
AccB1I	GGYRCC	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	3 cut(s)	60, 194, 363
AciI	CCGC	4 cut(s)	27, 58, 168, 171
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	339
AcyI	GRCGYC	1 cut(s)	44
AdeI	CACNNNGTG	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	3 cut(s)	142, 280, 391
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	6 cut(s)	109, 145, 165, 199, 262, 433
AluI	AGCT	6 cut(s)	109, 145, 165, 199, 262, 433
Alw21I	GWGCWC	2 cut(s)	129, 377
Alw26I	GTCTC	3 cut(s)	42, 55, 67
AoxI	GGCC	2 cut(s)	55, 304
ApeKI	GCWGC	1 cut(s)	262
ApoI	RAATTY	1 cut(s)	339
AspLEI	GCGC	3 cut(s)	32, 46, 365
AspS9I	GGNCC	3 cut(s)	82, 155, 398
AsuNHI	GCTAGC	1 cut(s)	161
AvaII	GGWCC	3 cut(s)	82, 155, 398
BanI	GGYRCC	1 cut(s)	43
Bbv12I	GWGCWC	2 cut(s)	129, 377
BbvI	GCAGC	1 cut(s)	249
BceAI	ACGGC	3 cut(s)	40, 78, 121
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	3 cut(s)	42, 55, 67
BfaI	CTAG	1 cut(s)	162
BfoI	RGCGCY	2 cut(s)	33, 47
BfuAI	ACCTGC	2 cut(s)	166, 409
BisI	GCNGC	4 cut(s)	28, 58, 171, 263
BlsI	GCNGC	4 cut(s)	29, 59, 172, 264
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	3 cut(s)	82, 155, 398
BmgT120I	GGNCC	3 cut(s)	82, 155, 398
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	315
BmtI	GCTAGC	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	321, 336
BsaHI	GRCGYC	1 cut(s)	44
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	120
BsaWI	WCCGGW	1 cut(s)	439
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse118I	RCCGGY	2 cut(s)	46, 173
Bse1I	ACTGG	2 cut(s)	85, 252
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	85, 252
BseRI	GAGGAG	2 cut(s)	55, 200
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	3 cut(s)	60, 194, 363
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	57, 306
BshNI	GGYRCC	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	129, 377
BsiSI	CCGG	5 cut(s)	41, 47, 54, 174, 440
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	3 cut(s)	42, 55, 67
BsmBI	CGTCTC	2 cut(s)	42, 67
BsnI	GGCC	2 cut(s)	57, 306
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	129, 377
Bsp143I	GATC	2 cut(s)	189, 358
Bsp68I	TCGCGA	1 cut(s)	194
BspACI	CCGC	4 cut(s)	27, 58, 168, 171
BspANI	GGCC	2 cut(s)	57, 306
BspFNI	CGCG	3 cut(s)	60, 194, 363
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	2 cut(s)	166, 409
BspOI	GCTAGC	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	55
BsrFI	RCCGGY	2 cut(s)	46, 173
BsrI	ACTGG	2 cut(s)	85, 252
BssAI	RCCGGY	2 cut(s)	46, 173
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	2 cut(s)	189, 358
BssNI	GRCGYC	1 cut(s)	44
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	234
BstACI	GRCGYC	1 cut(s)	44
BstC8I	GCNNGC	2 cut(s)	163, 175
BstFNI	CGCG	3 cut(s)	60, 194, 363
BstH2I	RGCGCY	2 cut(s)	33, 47
BstHHI	GCGC	3 cut(s)	32, 46, 365
BstKTI	GATC	2 cut(s)	192, 361
BstMAI	GTCTC	3 cut(s)	42, 55, 67
BstMBI	GATC	2 cut(s)	189, 358
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 142, 167
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstUI	CGCG	3 cut(s)	60, 194, 363
BstV1I	GCAGC	1 cut(s)	249
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	57, 306
BtsIMutI	CAGTG	1 cut(s)	259
BtuMI	TCGCGA	1 cut(s)	194
BveI	ACCTGC	2 cut(s)	166, 409
Cac8I	GCNNGC	2 cut(s)	163, 175
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	3 cut(s)	32, 46, 365
Cfr10I	RCCGGY	2 cut(s)	46, 173
Cfr13I	GGNCC	3 cut(s)	82, 155, 398
CseI	GACGC	1 cut(s)	49
CviAII	CATG	2 cut(s)	104, 412
DinI	GGCGCC	1 cut(s)	45
DpnI	GATC	2 cut(s)	191, 360
DpnII	GATC	2 cut(s)	189, 358
DraIII	CACNNNGTG	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
EciI	GGCGGA	1 cut(s)	157
EclXI	CGGCCG	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	55
Eco47I	GGWCC	3 cut(s)	82, 155, 398
Eco52I	CGGCCG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	313
EgeI	GGCGCC	1 cut(s)	45
EheI	GGCGCC	1 cut(s)	45
Esp3I	CGTCTC	2 cut(s)	42, 67
FaeI	CATG	2 cut(s)	107, 415
FaiI	YATR	5 cut(s)	105, 384, 413, 447, 457
FatI	CATG	2 cut(s)	103, 411
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	4 cut(s)	28, 58, 171, 263
Fsp4HI	GCNGC	4 cut(s)	28, 58, 171, 263
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	3 cut(s)	31, 45, 364
GluI	GCNGC	4 cut(s)	28, 58, 171, 263
GsuI	CTGGAG	2 cut(s)	321, 336
HaeII	RGCGCY	2 cut(s)	33, 47
HaeIII	GGCC	2 cut(s)	57, 306
HapII	CCGG	5 cut(s)	41, 47, 54, 174, 440
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	3 cut(s)	32, 46, 365
Hin1I	GRCGYC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	107, 415
Hin6I	GCGC	3 cut(s)	30, 44, 363
HinP1I	GCGC	3 cut(s)	30, 44, 363
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	4, 248
HpaII	CCGG	5 cut(s)	41, 47, 54, 174, 440
Hpy166II	GTNNAC	3 cut(s)	73, 151, 398
Hpy188III	TCNNGA	5 cut(s)	182, 193, 300, 336, 412
Hpy8I	GTNNAC	3 cut(s)	73, 151, 398
Hpy99I	CGWCG	2 cut(s)	152, 155
HpyAV	CCTTC	1 cut(s)	234
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	4 cut(s)	20, 257, 355, 420
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 142, 167
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	107, 415
HspAI	GCGC	3 cut(s)	30, 44, 363
KasI	GGCGCC	1 cut(s)	43
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	189, 358
LmnI	GCTCC	2 cut(s)	170, 372
Lsp1109I	GCAGC	1 cut(s)	249
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	426
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	2 cut(s)	191, 360
MboI	GATC	2 cut(s)	189, 358
MboII	GAAGA	2 cut(s)	219, 292
MhlI	GDGCHC	2 cut(s)	129, 377
MluCI	AATT	1 cut(s)	339
Mly113I	GGCGCC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	19, 73, 76, 123, 130, 178, 296, 311
MroNI	GCCGGC	1 cut(s)	173
MspI	CCGG	5 cut(s)	41, 47, 54, 174, 440
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MvnI	CGCG	3 cut(s)	60, 194, 363
MwoI	GCNNNNNNNGC	3 cut(s)	133, 142, 167
NaeI	GCCGGC	1 cut(s)	175
NarI	GGCGCC	1 cut(s)	44
NdeII	GATC	2 cut(s)	189, 358
NgoMIV	GCCGGC	1 cut(s)	173
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	2 cut(s)	107, 415
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	320
NruI	TCGCGA	1 cut(s)	194
PagI	TCATGA	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	248
PkrI	GCNGC	4 cut(s)	29, 59, 172, 264
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	3 cut(s)	82, 155, 398
RruI	TCGCGA	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	149
SatI	GCNGC	4 cut(s)	28, 58, 171, 263
Sau3AI	GATC	2 cut(s)	189, 358
Sau96I	GGNCC	3 cut(s)	82, 155, 398
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	2 cut(s)	129, 377
SfoI	GGCGCC	1 cut(s)	45
SgrDI	CGTCGACG	1 cut(s)	149
SinI	GGWCC	3 cut(s)	82, 155, 398
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	4 cut(s)	27, 58, 168, 171
SspDI	GGCGCC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	3 cut(s)	89, 99, 150
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	1 cut(s)	339
TauI	GCSGC	3 cut(s)	30, 60, 173
TfiI	GAWTC	1 cut(s)	248
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	262
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	428
TspGWI	ACGGA	2 cut(s)	58, 168
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	3 cut(s)	82, 155, 398
XapI	RAATTY	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.