Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Reverse (-)

47119619 .. 47120771

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1354900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTCCACCATCACTGGTTGCTAACGGCGGTGCTGCCGGTGTTGAGTCAGTTCCGGCACCTGTCACCGGCCGATTCGCCTCCGTCTACAGCGAGGTCCAGGTCAGTCGTATCGACCATGCACTTCCTCTCCCTTCCGTGCTCAGAAATCCCTTCAAGGTCGTCGATGGTCCAGCTAGCTCCGCCGCCGGCAATCCAGAGGAGATCGTGAAGTTGTTTCCTAATGTTTTCGGTCAGCCATCTGCACGCGCTAAGCGATTCCGATTCGGGTCTACCGGAGCAGAAGCTGAAGATCGGTGTCGTTTTATCTGGAGGTCAAGCGCCCGGAGGACACAATGTGATTTCTGGAATTTTCGATTACTTGCAAGACCGCGCCAAAGGAAGCACAATGTATGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008443 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0015979 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019200 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0042221 GO:0044237 GO:0044238 GO:0044262 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0046835 GO:0047334 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko01100 ko01110 ko01120 ko01130 map00010 map00030 map00051 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

PFK

Protein Analysis

134

Amino Acids

14.7

Weight (kDa)

11.03

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	2 cut(s)	87, 272
AccII	CGCG	2 cut(s)	249, 373
AciI	CCGC	4 cut(s)	30, 183, 186, 371
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	309
AdeI	CACNNNGTG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	3 cut(s)	176, 180, 287
AluI	AGCT	3 cut(s)	176, 180, 287
Alw21I	GWGCWC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	349
AspLEI	GCGC	3 cut(s)	251, 323, 375
AspS9I	GGNCC	2 cut(s)	97, 170
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	58
AsuNHI	GCTAGC	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	97, 170
BanI	GGYRCC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	19, 161, 247
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	1 cut(s)	101
BcnI	CCSGG	1 cut(s)	325
BfaI	CTAG	1 cut(s)	177
BfmI	CTRYAG	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	2 cut(s)	36, 186
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	2 cut(s)	37, 187
Bme1390I	CCNGG	2 cut(s)	101, 325
Bme18I	GGWCC	2 cut(s)	97, 170
BmgT120I	GGNCC	2 cut(s)	97, 170
BmiI	GGNNCC	2 cut(s)	6, 60
BmrFI	CCNGG	2 cut(s)	101, 325
BmtI	GCTAGC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	331
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	275
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	3 cut(s)	38, 68, 188
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	215
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	228
Bsh1236I	CGCG	2 cut(s)	249, 373
Bsh1285I	CGRYCG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	58
BsiEI	CGRYCG	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	6 cut(s)	39, 56, 69, 189, 276, 325
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	2 cut(s)	204, 292
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	4 cut(s)	30, 183, 186, 371
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	156
BspFNI	CGCG	2 cut(s)	249, 373
BspLI	GGNNCC	2 cut(s)	6, 60
BspOI	GCTAGC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	58
BsrFI	RCCGGY	3 cut(s)	38, 68, 188
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	3 cut(s)	38, 68, 188
BssMI	GATC	2 cut(s)	204, 292
Bst2UI	CCWGG	1 cut(s)	101
BstC8I	GCNNGC	3 cut(s)	178, 190, 247
BstDEI	CTNAG	2 cut(s)	143, 252
BstFNI	CGCG	2 cut(s)	249, 373
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	3 cut(s)	251, 323, 375
BstKTI	GATC	2 cut(s)	207, 295
BstMBI	GATC	2 cut(s)	204, 292
BstMCI	CGRYCG	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	99, 323
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	2 cut(s)	249, 373
BstV1I	GCAGC	1 cut(s)	22
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	178, 190, 247
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	3 cut(s)	251, 323, 375
Cfr10I	RCCGGY	3 cut(s)	38, 68, 188
Cfr13I	GGNCC	2 cut(s)	97, 170
CviAII	CATG	1 cut(s)	119
CviJI	RGCY	6 cut(s)	5, 72, 176, 180, 238, 287
CviKI_1	RGCY	6 cut(s)	5, 72, 176, 180, 238, 287
DdeI	CTNAG	2 cut(s)	143, 252
DpnI	GATC	2 cut(s)	206, 294
DpnII	GATC	2 cut(s)	204, 292
DraIII	CACNNNGTG	1 cut(s)	338
EaeI	YGGCCR	1 cut(s)	70
EagI	CGGCCG	1 cut(s)	70
EciI	GGCGGA	1 cut(s)	172
EclXI	CGGCCG	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	97, 170
Eco52I	CGGCCG	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	99
FaeI	CATG	1 cut(s)	122
FaiI	YATR	2 cut(s)	120, 394
FatI	CATG	1 cut(s)	118
FblI	GTMKAC	2 cut(s)	87, 272
Fnu4HI	GCNGC	2 cut(s)	36, 186
Fsp4HI	GCNGC	2 cut(s)	36, 186
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	3 cut(s)	250, 322, 374
GluI	GCNGC	2 cut(s)	36, 186
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	6 cut(s)	39, 56, 69, 189, 276, 325
HhaI	GCGC	3 cut(s)	251, 323, 375
Hin1II	CATG	1 cut(s)	122
Hin6I	GCGC	3 cut(s)	249, 321, 373
HinP1I	GCGC	3 cut(s)	249, 321, 373
HinfI	GANTC	4 cut(s)	47, 75, 258, 264
HpaII	CCGG	6 cut(s)	39, 56, 69, 189, 276, 325
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	88, 273
Hpy188I	TCNGA	2 cut(s)	146, 263
Hpy188III	TCNNGA	4 cut(s)	197, 208, 310, 346
Hpy8I	GTNNAC	2 cut(s)	88, 273
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	144, 163
HpyCH4V	TGCA	3 cut(s)	122, 245, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	143, 252
Hsp92II	CATG	1 cut(s)	122
HspAI	GCGC	3 cut(s)	249, 321, 373
KroI	GCCGGC	1 cut(s)	188
KroNI	GCCGGC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	204, 292
LmnI	GCTCC	3 cut(s)	10, 185, 278
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	177
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	2 cut(s)	206, 294
MboI	GATC	2 cut(s)	204, 292
MboII	GAAGA	1 cut(s)	302
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	88, 91, 138, 193, 306, 321
MroNI	GCCGGC	1 cut(s)	188
MspI	CCGG	6 cut(s)	39, 56, 69, 189, 276, 325
MspR9I	CCNGG	2 cut(s)	101, 325
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	249, 373
MwoI	GCNNNNNNNGC	1 cut(s)	182
NaeI	GCCGGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	2 cut(s)	204, 292
NgoMIV	GCCGGC	1 cut(s)	188
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	1 cut(s)	122
NlaIV	GGNNCC	2 cut(s)	6, 60
NmuCI	GTSAC	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	253
PdiI	GCCGGC	1 cut(s)	190
PfeI	GAWTC	3 cut(s)	75, 258, 264
PkrI	GCNGC	2 cut(s)	37, 187
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	99
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	6, 60
PspPI	GGNCC	2 cut(s)	97, 170
PstNI	CAGNNNCTG	1 cut(s)	287
SatI	GCNGC	2 cut(s)	36, 186
Sau3AI	GATC	2 cut(s)	204, 292
Sau96I	GGNCC	2 cut(s)	97, 170
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	2 cut(s)	101, 325
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	64, 99, 105, 162, 178, 182, 289, 317
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	2 cut(s)	97, 170
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	4 cut(s)	30, 183, 186, 371
SspMI	CTAG	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	99, 323
TaqI	TCGA	3 cut(s)	114, 165, 355
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	1 cut(s)	349
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	3 cut(s)	75, 258, 264
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	64
TspGWI	ACGGA	2 cut(s)	73, 127
TspRI	CASTG	1 cut(s)	21
VpaK11BI	GGWCC	2 cut(s)	97, 170
XapI	RAATTY	1 cut(s)	349
XmiI	GTMKAC	2 cut(s)	87, 272
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.