RchiOBHm_Chr7g0178941

Mitochondrial protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001357
Physical Location & Seq
Forward (+)
1425441 .. 1427241
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15946

Sequence Viewer

Length: 813 bp
ATGTTTGAAAATGGTGGAGGCTACAGGAATAATTTTGGGTTGTCTCCAGAGTGTCAAATCTGTAGGAAGAAAGGCCACACTGCTGCATATTGCTTCTACAGGAATGACATCCCTCCTGATCATCGCTCTAACTCTGTGATCATTTGTCAAATATGTGGTCTAAAGGGACATGCAGCCTTAGACTGCCATCACAGGTCAAACTTTGCATTGCAAGGAGTTGAACCACCTTCTACTCTTGCTGCAATGATTGTGCATAATACCAATGAAGCTAGTACTTCTGGTGATTCTATTACTGTACAGGGTTTCTCATATGCAGGTACTAGTTCTCCTCGTCCTTCTTTTAGTCCGGATCAGTCACAAGTTCTTCCTATCTGTTCTGCTTTGGGTAACTCTCTTAACACCCACATTGGAGTCTCTCTTGCCGTGGTTGATGGGGGAGATCAGAATGTGATAAATAATGATCAAGTTGATGCACAGTTGCAGTTACCTCATGAACAATTTGATCAAAGAAGAAGTCAGATTTATGAGAAATCCATGCTTACCAAAGCCAAAGGTTTGAGTATCAAGAAGAAGACATTTCGGGATTTTTATGCTTATTCATGCATTGCTCAACAAAAATTGTTTGATGAGTTTGCATACTTCTGTGGCTTTACTTCTGCATTGGATATCCATGTTGCTACAGAACCAAAGACGTTCAAAACTGTTGTTCGAAAATCAAAGTGGGATTCTGTTATGAATGGAGAAACTAATGCCCTCAGGAAGCAAGAGATCAGTTACAGACATAATGGAGTGTTCATCTATCAAGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

270

Amino Acids

30.06

Weight (kDa)

8.33

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 346
AclWI GGATC 1 cut(s) 357
AfaI GTAC 3 cut(s) 274, 297, 319
AgsI TTSAA 3 cut(s) 8, 221, 697
AhlI ACTAGT 1 cut(s) 320
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 2 cut(s) 48, 418
AlwI GGATC 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 3 cut(s) 83, 173, 239
ArsI GACNNNNNNTTYG 4 cut(s) 142, 174, 499, 531
AsuHPI GGTGA 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 709
AxyI CCTNAGG 1 cut(s) 755
BbsI GAAGAC 1 cut(s) 578
BbvI GCAGC 3 cut(s) 70, 185, 226
BccI CCATC 2 cut(s) 195, 425
BceAI ACGGC 1 cut(s) 407
BclI TGATCA 4 cut(s) 118, 138, 460, 502
BcoDI GTCTC 2 cut(s) 48, 418
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 2 cut(s) 270, 321
BfmI CTRYAG 4 cut(s) 22, 61, 97, 678
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 3 cut(s) 84, 174, 240
BlsI GCNGC 3 cut(s) 85, 175, 241
BmcAI AGTACT 1 cut(s) 274
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 578
BpmI CTGGAG 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 709
BsaJI CCNNGG 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 346
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bse21I CCTNAGG 1 cut(s) 755
Bse3DI GCAATG 3 cut(s) 206, 249, 603
BseAI TCCGGA 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 1 cut(s) 108
BseMI GCAATG 3 cut(s) 206, 249, 603
BseMII CTCAG 1 cut(s) 769
BseRI GAGGAG 1 cut(s) 318
BseXI GCAGC 3 cut(s) 70, 185, 226
BshFI GGCC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 347
BslFI GGGAC 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 48, 418
BsmFI GGGAC 1 cut(s) 180
BsnI GGCC 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 709
Bsp13I TCCGGA 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 295
Bsp143I GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 768
BspEI TCCGGA 1 cut(s) 346
BspHI TCATGA 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 357
BspT104I TTCGAA 1 cut(s) 709
BsrDI GCAATG 3 cut(s) 206, 249, 603
BsrGI TGTACA 1 cut(s) 295
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
Bst4CI ACNGT 3 cut(s) 295, 477, 703
BstAUI TGTACA 1 cut(s) 295
BstBI TTCGAA 1 cut(s) 709
BstDEI CTNAG 2 cut(s) 178, 755
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 7 cut(s) 121, 141, 352, 442, 463, 505, 771
BstMAI GTCTC 2 cut(s) 48, 418
BstMBI GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
BstNSI RCATGY 1 cut(s) 173
BstSFI CTRYAG 4 cut(s) 22, 61, 97, 678
BstV1I GCAGC 3 cut(s) 70, 185, 226
BstV2I GAAGAC 1 cut(s) 578
Bsu36I CCTNAGG 1 cut(s) 755
BsuRI GGCC 1 cut(s) 75
BtgI CCRYGG 1 cut(s) 423
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
BveI ACCTGC 1 cut(s) 305
CciI TCATGA 1 cut(s) 490
Csp6I GTAC 3 cut(s) 273, 296, 318
CviAII CATG 5 cut(s) 170, 491, 535, 600, 671
CviJI RGCY 6 cut(s) 21, 75, 176, 269, 548, 648
CviKI_1 RGCY 6 cut(s) 21, 75, 176, 269, 548, 648
CviQI GTAC 3 cut(s) 273, 296, 318
DdeI CTNAG 2 cut(s) 178, 755
DpnI GATC 7 cut(s) 120, 140, 351, 441, 462, 504, 770
DpnII GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
Eco32I GATATC 1 cut(s) 667
Eco81I CCTNAGG 1 cut(s) 755
EcoRV GATATC 1 cut(s) 667
EcoT22I ATGCAT 1 cut(s) 605
FaeI CATG 5 cut(s) 173, 494, 538, 603, 674
FaqI GGGAC 1 cut(s) 180
FatI CATG 5 cut(s) 169, 490, 534, 599, 670
FauNDI CATATG 1 cut(s) 310
FbaI TGATCA 4 cut(s) 118, 138, 460, 502
Fnu4HI GCNGC 3 cut(s) 84, 174, 240
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 84, 174, 240
FspBI CTAG 2 cut(s) 270, 321
GluI GCNGC 3 cut(s) 84, 174, 240
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 347
Hin1II CATG 5 cut(s) 173, 494, 538, 603, 674
HinfI GANTC 3 cut(s) 284, 411, 725
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 293
Hpy188I TCNGA 2 cut(s) 444, 519
Hpy188III TCNNGA 8 cut(s) 47, 116, 347, 491, 565, 581, 757, 803
HpyAV CCTTC 2 cut(s) 237, 345
HpyCH4III ACNGT 3 cut(s) 295, 477, 703
HpyCH4IV ACGT 1 cut(s) 692
HpyF3I CTNAG 2 cut(s) 178, 755
HpySE526I ACGT 1 cut(s) 692
Hsp92II CATG 5 cut(s) 173, 494, 538, 603, 674
Kpn2I TCCGGA 1 cut(s) 346
Ksp22I TGATCA 4 cut(s) 118, 138, 460, 502
Kzo9I GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
Lsp1109I GCAGC 3 cut(s) 70, 185, 226
LweI GCATC 1 cut(s) 460
MaeI CTAG 2 cut(s) 270, 321
MaeII ACGT 1 cut(s) 692
MaeIII GTNAC 4 cut(s) 354, 386, 483, 773
MalI GATC 7 cut(s) 120, 140, 351, 441, 462, 504, 770
MboI GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
MboII GAAGA 5 cut(s) 79, 356, 522, 580, 583
MluCI AATT 3 cut(s) 31, 497, 617
MlyI GAGTC 1 cut(s) 420
MnlI CCTC 5 cut(s) 11, 123, 339, 498, 764
Mph1103I ATGCAT 1 cut(s) 605
MroI TCCGGA 1 cut(s) 346
MseI TTAA 1 cut(s) 396
MspI CCGG 1 cut(s) 347
NdeI CATATG 1 cut(s) 310
NdeII GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
NlaIII CATG 5 cut(s) 173, 494, 538, 603, 674
NmuCI GTSAC 1 cut(s) 354
NsiI ATGCAT 1 cut(s) 605
NspI RCATGY 1 cut(s) 173
NspV TTCGAA 1 cut(s) 709
PagI TCATGA 1 cut(s) 490
PfeI GAWTC 2 cut(s) 284, 725
PkrI GCNGC 3 cut(s) 85, 175, 241
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
RsaI GTAC 3 cut(s) 274, 297, 319
RsaNI GTAC 3 cut(s) 273, 296, 318
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 3 cut(s) 84, 174, 240
Sau3AI GATC 7 cut(s) 118, 138, 349, 439, 460, 502, 768
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 420
SetI ASST 7 cut(s) 197, 229, 271, 319, 490, 556, 695
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 4 cut(s) 22, 61, 97, 678
SfuI TTCGAA 1 cut(s) 709
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 3 cut(s) 31, 497, 617
SspMI CTAG 2 cut(s) 270, 321
TaaI ACNGT 3 cut(s) 295, 477, 703
TaiI ACGT 1 cut(s) 695
TaqI TCGA 1 cut(s) 709
TasI AATT 3 cut(s) 31, 497, 617
TatI WGTACW 2 cut(s) 272, 295
TfiI GAWTC 2 cut(s) 284, 725
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 85
TseFI GTSAC 1 cut(s) 354
TseI GCWGC 3 cut(s) 83, 173, 239
Tsp45I GTSAC 1 cut(s) 354
TspDTI ATGAA 5 cut(s) 279, 507, 588, 749, 784
TspRI CASTG 1 cut(s) 85
XceI RCATGY 1 cut(s) 173
XspI CTAG 2 cut(s) 270, 321
ZrmI AGTACT 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.