Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Forward (+)

6746859 .. 6747712

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTTTGGTTCTAATACTTTTCCTCCAGGGCATCATGATCAATTTTGTGGATATGGTTTTGTAGCTCACTCTCATTCTGGTCAGCAGCATGGGTTCAAATCTCAGACCTACAATGGGGGTTACAGGGCTGGAAATGGTGGTCAATTCAGGAATAATAGCAGCAACTATAGAATTGGTAATAATTTCAGAGGACGAGGGTTTTATGGTGGAAATAGTCCTTACTCTTCAGGGACAAGACAAGTTCAGAATGTTACTGGGTCGTGGTCCGGCAATACAGAAGCTAGAACAAATGTTGTAGTTGAGTGTCAAATCTGCAATAAAAGAGGTCATACTGCAGTGAACTGTTTTCACAGAAATACAGGAAATACACCAGCTGGTTTCATTGTGGAGTGTCAGATATGTGGGAAAAGAGGACATTCTGCGCTTGACTGTTTTCATCGGGCCAACTACATATATCAAGGTCAGCCACCTCCAGCCTCACTGTCTGCCATGAATGCACAACAAACATCTCAGGCTCCTCCTCAGGATTTGTGGATTGTGGATTCAGGACAAGAAGACAAGGGAGGTGGTGTATCACGGAAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2

Protein Analysis

196

Amino Acids

21.18

Weight (kDa)

9.19

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	114
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	3 cut(s)	65, 281, 374
AluI	AGCT	3 cut(s)	65, 281, 374
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	85, 159
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	2 cut(s)	264, 441
AvaII	GGWCC	1 cut(s)	264
AxyI	CCTNAGG	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	97, 171
BciT130I	CCWGG	1 cut(s)	27
BclI	TGATCA	1 cut(s)	37
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	2 cut(s)	166, 333
BisI	GCNGC	2 cut(s)	86, 160
BlsI	GCNGC	2 cut(s)	87, 161
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	264, 441
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	264
BmsI	GCATC	1 cut(s)	40
BmuI	ACTGGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	561
BpmI	CTGGAG	2 cut(s)	9, 456
BsaJI	CCNNGG	1 cut(s)	26
BsaXI	ACNNNNNCTCC	4 cut(s)	7, 37, 555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	259
Bse21I	CCTNAGG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	114
BseMII	CTCAG	3 cut(s)	116, 524, 536
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	507, 510
BseXI	GCAGC	2 cut(s)	97, 171
BshFI	GGCC	1 cut(s)	443
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	443
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	3 cut(s)	115, 523, 535
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	3 cut(s)	344, 431, 483
Bst6I	CTCTTC	1 cut(s)	229
BstDEI	CTNAG	3 cut(s)	102, 510, 522
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	2 cut(s)	166, 333
BstV1I	GCAGC	2 cut(s)	97, 171
BstV2I	GAAGAC	1 cut(s)	561
Bsu36I	CCTNAGG	1 cut(s)	522
BsuRI	GGCC	1 cut(s)	443
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 479
CciI	TCATGA	1 cut(s)	34
CfoI	GCGC	1 cut(s)	424
Cfr13I	GGNCC	2 cut(s)	264, 441
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	3 cut(s)	35, 89, 490
CviJI	RGCY	8 cut(s)	65, 128, 281, 374, 443, 466, 476, 515
CviKI_1	RGCY	8 cut(s)	65, 128, 281, 374, 443, 466, 476, 515
DdeI	CTNAG	3 cut(s)	102, 510, 522
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	522
EcoRII	CCWGG	1 cut(s)	25
FaeI	CATG	3 cut(s)	38, 92, 493
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	3 cut(s)	34, 88, 489
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	2 cut(s)	86, 160
Fsp4HI	GCNGC	2 cut(s)	86, 160
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	2 cut(s)	86, 160
GsuI	CTGGAG	2 cut(s)	9, 456
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	3 cut(s)	38, 92, 493
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HinfI	GANTC	1 cut(s)	542
HpaII	CCGG	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	4 cut(s)	105, 188, 246, 396
Hpy188III	TCNNGA	4 cut(s)	35, 148, 524, 546
Hpy8I	GTNNAC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	344, 431, 483
HpyCH4V	TGCA	3 cut(s)	315, 335, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	3 cut(s)	102, 510, 522
Hsp92II	CATG	3 cut(s)	38, 92, 493
HspAI	GCGC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	2 cut(s)	97, 171
LweI	GCATC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	119, 250
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	216, 566
MluCI	AATT	4 cut(s)	41, 143, 171, 181
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	494
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	3 cut(s)	38, 92, 493
NlaIV	GGNNCC	1 cut(s)	516
PagI	TCATGA	1 cut(s)	34
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	2 cut(s)	87, 161
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	264, 441
PstI	CTGCAG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	374
SatI	GCNGC	2 cut(s)	86, 160
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	2 cut(s)	264, 441
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	8 cut(s)	67, 110, 283, 328, 376, 463, 472, 568
SfaNI	GCATC	1 cut(s)	40
SfcI	CTRYAG	2 cut(s)	166, 333
SinI	GGWCC	1 cut(s)	264
Sse9I	AATT	4 cut(s)	41, 143, 171, 181
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	3 cut(s)	344, 431, 483
TasI	AATT	4 cut(s)	41, 143, 171, 181
TfiI	GAWTC	1 cut(s)	542
TscAI	CASTG	2 cut(s)	342, 486
TseI	GCWGC	2 cut(s)	85, 159
TspDTI	ATGAA	3 cut(s)	370, 425, 506
TspRI	CASTG	2 cut(s)	342, 486
VpaK11BI	GGWCC	1 cut(s)	264
XspI	CTAG	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.