Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001357

Physical Location & Seq

Genomic Coordinates Reverse (-)

24606729 .. 24607731

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCCACCTCCAGTTGAATTTTCTCCATATGGATATGGTTATGGTTTTGTTGGTACTTCCGAGATTGGTTTTTCTGTTGGTAATTCATCACAAGGTTCTATGTCTATGTCACCTCAATCTAATTACAGATCATACAATGGGCATCAACAGATGGGTAATGGTAACTTCAGGTCCAATTTTAATAAAGGCAGAGGTTCTAATTCTGGTTCTAGACAGGGTCAGAGGAATGGGAATATTGATTCACGGTTTAATATGCAGCCTGGATGTCAGATTTGTCAACGGAGAGGTCATATTGCTCCTAACTGCTATTATTGGTCTCCAAGTTCATCTTCGACTATCACTGCATGTCAAATATATGAGCACGTGTGGCCGTCGAGCTTCATACATGGAACAACCTACTCTGATACCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.11

Weight (kDa)

9.02

Isoelectric Point (pI)

63.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12000
fragaria_vesca	FvH4_3g01360 FvH4_3g01360 FvH4_3g22340 FvH4_5g38692
malus_domestica	MD05G1352800.v1.1 MD05G1354700.v1.1 MD05G1354900.v1.1 MD08G1183700.v1.1 MD09G1228400.v1.1 MD10G1133500.v1.1 MD10G1327400.v1.1 MD12G1211800.v1.1 MD13G1182600.v1.1 MD17G1176400.v1.1 MD17G1211800.v1.1
prunus_persica	Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1 Prupe.4G014600_v2.0.a1
pyrus_communis	pycom01g09830 pycom05g15580 pycom05g32000 pycom10g04820 pycom10g27690 pycom111g03470 pycom12g06510 pycom14g19720 pycom15g20870 pycom15g34000 pycom17g07230 pycom17g26290
rosa_chinensis	RchiOBHm_Chr1g0337721 RchiOBHm_Chr2g0111881 RchiOBHm_Chr2g0137981 RchiOBHm_Chr4g0422781 RchiOBHm_Chr5g0001981 RchiOBHm_Chr6g0245811 RchiOBHm_Chr7g0178941
rosa_laevigata	RLG00000030986
rosa_multiflora	Rmu_co8429625.1_g000001 Rmu_sc0000378.1_g000018 Rmu_sc0006008.1_g000007
rosa_roxburghii	Rroxscaffold_1G00071370 Rroxscaffold_1G00074370 Rroxscaffold_4G00281720
rosa_rugosa	Rorug02G0348600 Rorug04G0394100 Rorug04G0394200
rosa_samantha	Rh1AG166900 Rh2BG004000 Rh5CG016600 Rh5DG017200
rosa_wichuraiana	Rw5G001500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	151
AcvI	CACGTG	1 cut(s)	364
AfaI	GTAC	1 cut(s)	55
AflIII	ACRYGT	1 cut(s)	363
AgsI	TTSAA	1 cut(s)	17
AjnI	CCWGG	1 cut(s)	259
AjuI	GAANNNNNNNTTGG	2 cut(s)	313, 345
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Alw21I	GWGCWC	1 cut(s)	363
Alw26I	GTCTC	1 cut(s)	321
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	256
ApoI	RAATTY	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	364
Bbv12I	GWGCWC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	1 cut(s)	321
BfaI	CTAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	258
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	261
BmsI	GCATC	1 cut(s)	151
BsaAI	YACGTR	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	261
BseGI	GGATG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	363
BsmAI	GTCTC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	363
Bsp143I	GATC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	269
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	269
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	171
Csp6I	GTAC	1 cut(s)	54
CviAII	CATG	2 cut(s)	345, 386
CviJI	RGCY	3 cut(s)	259, 370, 378
CviKI_1	RGCY	3 cut(s)	259, 370, 378
CviQI	GTAC	1 cut(s)	54
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	348, 389
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FatI	CATG	2 cut(s)	344, 385
FauNDI	CATATG	1 cut(s)	28
Fnu4HI	GCNGC	1 cut(s)	257
FokI	GGATG	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	257
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	348, 389
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	239
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	4 cut(s)	61, 222, 270, 403
Hpy188III	TCNNGA	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	246
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	2 cut(s)	256, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	367
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	348, 389
Kzo9I	GATC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	24, 154, 189, 200, 246, 273
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	108, 161
MalI	GATC	1 cut(s)	130
MboI	GATC	1 cut(s)	128
MboII	GAAGA	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	363
MluCI	AATT	5 cut(s)	17, 82, 121, 175, 199
MnlI	CCTC	5 cut(s)	18, 123, 185, 216, 278
MseI	TTAA	2 cut(s)	180, 249
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	1 cut(s)	367
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	1 cut(s)	128
NlaIII	CATG	2 cut(s)	348, 389
NmuCI	GTSAC	1 cut(s)	108
NspI	RCATGY	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	239
PflFI	GACNNNGTC	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	258
PmaCI	CACGTG	1 cut(s)	364
PmlI	CACGTG	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	259
PspCI	CACGTG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	216
RsaI	GTAC	1 cut(s)	55
RsaNI	GTAC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	180, 249
SatI	GCNGC	1 cut(s)	257
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	261
SduI	GDGCHC	1 cut(s)	363
SetI	ASST	9 cut(s)	10, 97, 115, 173, 196, 289, 366, 380, 398
SfaNI	GCATC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	171
Sse9I	AATT	5 cut(s)	17, 82, 121, 175, 199
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	246
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	332, 374
TasI	AATT	5 cut(s)	17, 82, 121, 175, 199
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	180, 249
Tru9I	TTAA	2 cut(s)	180, 249
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	108
TseI	GCWGC	1 cut(s)	256
Tsp45I	GTSAC	1 cut(s)	108
TspDTI	ATGAA	3 cut(s)	75, 315, 370
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	346
Tth111I	GACNNNGTC	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	17
XbaI	TCTAGA	1 cut(s)	209
XceI	RCATGY	1 cut(s)	348
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.