Rroxscaffold_1G00074380

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011981
Physical Location & Seq
Forward (+)
95401179 .. 95401715
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074380.1

Sequence Viewer

Length: 537 bp
ATGAGAGCCTCCAGGCAGCACAAGAAGCAAGCGCAGCTGCAACGTAGAGCTCCGATTCGGGCATTGTGTTGCAGTAGCTCCAGGCTCAGCGTGTCTTCGTCTTCCGAGGAAGTAGAGAGCTCCAGCACTTCTGATCGTAACAGGTACCCGTCGATATCAAGCTTAGCGCATGCGATGGTTCAAGAGAGACTAGACCAAATGATTAGAGAGAGGCAGGAGGAGGACGCCGCGAGAGTAGTGCATGTGGATCGTCGGAGAAGAAAGAACAAAGTAGTATATGATGATCGAGCACAAGCAACAGGGACTAAATTTGTCGTAATGGTTGCGATGGAAAAGTGTTCCTATGATCCGAGAGAAGATTTTAGGGAGTCCATCGCGGAGATGATAATGGCAAAGCGGATCGAAGAGCCAAAGGATCTTCGTAGCCTCTTGAATTACTATGTTTCGATGAATTCGGAGGAGTATCACGGGGGATTATACTCGAGGTGTTTCATGAAGTTTGCTCTGATTTGTTCCTATGTAAATGCCATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

178

Amino Acids

20.69

Weight (kDa)

9.28

Isoelectric Point (pI)

69.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 114 - 157 2.6e-15 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 144
AccB1I GGYRCC 1 cut(s) 144
AccII CGCG 2 cut(s) 230, 377
AciI CCGC 3 cut(s) 228, 377, 397
AclWI GGATC 4 cut(s) 255, 341, 407, 423
AcsI RAATTY 2 cut(s) 308, 451
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 2 cut(s) 182, 433
AjnI CCWGG 2 cut(s) 11, 80
AluBI AGCT 5 cut(s) 37, 50, 78, 120, 162
AluI AGCT 5 cut(s) 37, 50, 78, 120, 162
Alw21I GWGCWC 3 cut(s) 52, 122, 292
Alw26I GTCTC 1 cut(s) 181
AlwI GGATC 4 cut(s) 255, 341, 407, 423
Ama87I CYCGRG 1 cut(s) 481
ApeKI GCWGC 3 cut(s) 16, 34, 37
ApoI RAATTY 2 cut(s) 308, 451
AseI ATTAAT 1 cut(s) 531
Asp718I GGTACC 1 cut(s) 144
AspLEI GCGC 2 cut(s) 34, 169
AvaI CYCGRG 1 cut(s) 481
BanI GGYRCC 1 cut(s) 144
BanII GRGCYC 2 cut(s) 52, 122
BbsI GAAGAC 2 cut(s) 87, 93
Bbv12I GWGCWC 3 cut(s) 52, 122, 292
BbvI GCAGC 3 cut(s) 24, 28, 46
BccI CCATC 3 cut(s) 169, 322, 380
BcgI CGANNNNNNTGC 4 cut(s) 220, 230, 254, 264
BciT130I CCWGG 2 cut(s) 13, 82
BcoDI GTCTC 1 cut(s) 181
BfaI CTAG 1 cut(s) 191
BisI GCNGC 4 cut(s) 17, 35, 38, 228
BlpI GCTNAGC 2 cut(s) 86, 163
BlsI GCNGC 4 cut(s) 18, 36, 39, 229
Bme1390I CCNGG 2 cut(s) 13, 82
BmeT110I CYCGRG 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 146
BmrFI CCNGG 2 cut(s) 13, 82
BpiI GAAGAC 2 cut(s) 87, 93
BpmI CTGGAG 2 cut(s) 64, 106
Bpu1102I GCTNAGC 2 cut(s) 86, 163
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 105
BseBI CCWGG 2 cut(s) 13, 82
BseDI CCNNGG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 233, 473
BseXI GCAGC 3 cut(s) 24, 28, 46
Bsh1236I CGCG 2 cut(s) 230, 377
BshNI GGYRCC 1 cut(s) 144
BsiHKAI GWGCWC 3 cut(s) 52, 122, 292
BsiHKCI CYCGRG 1 cut(s) 481
BslFI GGGAC 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 181
BsmFI GGGAC 1 cut(s) 316
BsoBI CYCGRG 1 cut(s) 481
Bsp1286I GDGCHC 3 cut(s) 52, 122, 292
Bsp143I GATC 6 cut(s) 133, 247, 283, 346, 399, 415
Bsp1720I GCTNAGC 2 cut(s) 86, 163
BspACI CCGC 3 cut(s) 228, 377, 397
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 2 cut(s) 230, 377
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 1 cut(s) 146
BspPI GGATC 4 cut(s) 255, 341, 407, 423
BspQI GCTCTTC 1 cut(s) 399
BspT107I GGYRCC 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 6 cut(s) 133, 247, 283, 346, 399, 415
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 2 cut(s) 13, 82
Bst6I CTCTTC 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 30, 171
BstDEI CTNAG 2 cut(s) 86, 163
BstFNI CGCG 2 cut(s) 230, 377
BstHHI GCGC 2 cut(s) 34, 169
BstKTI GATC 6 cut(s) 136, 250, 286, 349, 402, 418
BstMAI GTCTC 1 cut(s) 181
BstMBI GATC 6 cut(s) 133, 247, 283, 346, 399, 415
BstMWI GCNNNNNNNGC 2 cut(s) 25, 34
BstNI CCWGG 2 cut(s) 13, 82
BstNSI RCATGY 2 cut(s) 173, 245
BstSCI CCNGG 2 cut(s) 11, 80
BstUI CGCG 2 cut(s) 230, 377
BstV1I GCAGC 3 cut(s) 24, 28, 46
BstV2I GAAGAC 2 cut(s) 87, 93
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
BtgZI GCGATG 3 cut(s) 188, 341, 358
Cac8I GCNNGC 2 cut(s) 30, 171
CciI TCATGA 1 cut(s) 492
CfoI GCGC 2 cut(s) 34, 169
CseI GACGC 1 cut(s) 233
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 170, 242, 493
CviJI RGCY 9 cut(s) 8, 37, 50, 78, 85, 120, 162, 409, 426
CviKI_1 RGCY 9 cut(s) 8, 37, 50, 78, 85, 120, 162, 409, 426
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 86, 163
DpnI GATC 6 cut(s) 135, 249, 285, 348, 401, 417
DpnII GATC 6 cut(s) 133, 247, 283, 346, 399, 415
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Ecl136II GAGCTC 2 cut(s) 50, 120
Eco24I GRGCYC 2 cut(s) 52, 122
Eco32I GATATC 1 cut(s) 156
Eco53kI GAGCTC 2 cut(s) 50, 120
Eco88I CYCGRG 1 cut(s) 481
EcoICRI GAGCTC 2 cut(s) 50, 120
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 2 cut(s) 11, 80
EcoRV GATATC 1 cut(s) 156
EcoT38I GRGCYC 2 cut(s) 52, 122
FaeI CATG 3 cut(s) 173, 245, 496
FaiI YATR 9 cut(s) 171, 243, 277, 279, 345, 441, 478, 494, 519
FaqI GGGAC 1 cut(s) 316
FatI CATG 3 cut(s) 169, 241, 492
Fnu4HI GCNGC 4 cut(s) 17, 35, 38, 228
FriOI GRGCYC 2 cut(s) 52, 122
Fsp4HI GCNGC 4 cut(s) 17, 35, 38, 228
FspBI CTAG 1 cut(s) 191
GlaI GCGC 2 cut(s) 33, 168
GluI GCNGC 4 cut(s) 17, 35, 38, 228
GsuI CTGGAG 2 cut(s) 64, 106
HgaI GACGC 1 cut(s) 233
HhaI GCGC 2 cut(s) 34, 169
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 3 cut(s) 173, 245, 496
Hin6I GCGC 2 cut(s) 32, 167
HinP1I GCGC 2 cut(s) 32, 167
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 2 cut(s) 55, 368
Hpy188I TCNGA 7 cut(s) 54, 106, 133, 255, 351, 457, 507
Hpy188III TCNNGA 3 cut(s) 182, 430, 493
Hpy99I CGWCG 2 cut(s) 154, 255
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 3 cut(s) 40, 72, 241
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 34
HpyF3I CTNAG 2 cut(s) 86, 163
HpySE526I ACGT 1 cut(s) 43
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 3 cut(s) 173, 245, 496
HspAI GCGC 2 cut(s) 32, 167
KpnI GGTACC 1 cut(s) 148
Kzo9I GATC 6 cut(s) 133, 247, 283, 346, 399, 415
LguI GCTCTTC 1 cut(s) 399
LmnI GCTCC 3 cut(s) 55, 83, 125
LpnPI CCDG 7 cut(s) 25, 67, 94, 127, 136, 200, 285
Lsp1109I GCAGC 3 cut(s) 24, 28, 46
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 43
MaeIII GTNAC 1 cut(s) 137
MalI GATC 6 cut(s) 135, 249, 285, 348, 401, 417
MboI GATC 6 cut(s) 133, 247, 283, 346, 399, 415
MboII GAAGA 6 cut(s) 87, 93, 270, 368, 410, 416
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 3 cut(s) 52, 122, 292
MluCI AATT 4 cut(s) 308, 433, 451, 532
MlyI GAGTC 1 cut(s) 377
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 8 cut(s) 19, 100, 204, 211, 214, 437, 451, 477
MseI TTAA 1 cut(s) 531
MspA1I CMGCKG 1 cut(s) 37
MspR9I CCNGG 2 cut(s) 13, 82
MvaI CCWGG 2 cut(s) 13, 82
MvnI CGCG 2 cut(s) 230, 377
MwoI GCNNNNNNNGC 2 cut(s) 25, 34
NdeII GATC 6 cut(s) 133, 247, 283, 346, 399, 415
NlaIII CATG 3 cut(s) 173, 245, 496
NlaIV GGNNCC 1 cut(s) 146
NspI RCATGY 2 cut(s) 173, 245
PaeI GCATGC 1 cut(s) 173
PaeR7I CTCGAG 1 cut(s) 481
PagI TCATGA 1 cut(s) 492
PciSI GCTCTTC 1 cut(s) 399
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 4 cut(s) 18, 36, 39, 229
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 531
Psp124BI GAGCTC 2 cut(s) 52, 122
Psp6I CCWGG 2 cut(s) 11, 80
PspGI CCWGG 2 cut(s) 11, 80
PspN4I GGNNCC 1 cut(s) 146
PspXI VCTCGAGB 1 cut(s) 481
PsuI RGATCY 1 cut(s) 415
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 2 cut(s) 52, 122
SapI GCTCTTC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 4 cut(s) 17, 35, 38, 228
Sau3AI GATC 6 cut(s) 133, 247, 283, 346, 399, 415
SchI GAGTC 1 cut(s) 377
ScrFI CCNGG 2 cut(s) 13, 82
SduI GDGCHC 3 cut(s) 52, 122, 292
SetI ASST 8 cut(s) 39, 46, 52, 80, 122, 146, 164, 488
Sfr274I CTCGAG 1 cut(s) 481
SlaI CTCGAG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 481
SmoI CTYRAG 1 cut(s) 481
SphI GCATGC 1 cut(s) 173
Sse9I AATT 4 cut(s) 308, 433, 451, 532
SsiI CCGC 3 cut(s) 228, 377, 397
SspMI CTAG 1 cut(s) 191
SstI GAGCTC 2 cut(s) 52, 122
StyD4I CCNGG 2 cut(s) 11, 80
TaiI ACGT 1 cut(s) 46
TaqI TCGA 5 cut(s) 152, 286, 402, 446, 482
TasI AATT 4 cut(s) 308, 433, 451, 532
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TseI GCWGC 3 cut(s) 16, 34, 37
TspDTI ATGAA 3 cut(s) 464, 481, 509
VspI ATTAAT 1 cut(s) 531
XapI RAATTY 2 cut(s) 308, 451
XceI RCATGY 2 cut(s) 173, 245
XhoI CTCGAG 1 cut(s) 481
XspI CTAG 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.