Rmu_sc0000378.1_g000017

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000378.1
OG0011981
Physical Location & Seq
Reverse (-)
75797 .. 76288
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000378.1_g000017.1.cds

Sequence Viewer

Length: 492 bp
atgagagcctccaggcagcacaagaagcaagcgcagctgcaacgtagagctccgattcgggcattgtgctgcagtagctgcaggctcagcgtgtcttcgtcgtacccgtcgatatcaagcttagcgcatgcgatggttcaagagagactagaccaaatgattagagagaggcaggaggaggatgcagcgagagtagtgcatgtggatcgtcggagaagaaagaacaaagtagtatatgatgatcgagcacaagcaacaggttcgactaaatttgtcgtaatggttgcgatggaaaagtgttcttatgatccaagagaagattttagggagtccatggcggagatgataatggcaaagcggatcgaagagccaaaggatctccgtagcctcttgaattactatgtttcgatgaattcggaggagtatcacgggattatactcgaggtgtttcatgaagtttgctctgatttgttcctatgtaaatgctattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

163

Amino Acids

19.1

Weight (kDa)

8.86

Isoelectric Point (pI)

67.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011981)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04025
fragaria_vesca FvH4_3g01350
malus_domestica MD05G1352900.v1.1 MD10G1327500.v1.1
prunus_persica Prupe.4G014500_v2.0.a1
pyrus_communis pycom05g32020 pycom05g32100 pycom17g07250
rosa_chinensis RchiOBHm_Chr5g0001971
rosa_laevigata RLG00000030985
rosa_multiflora Rmu_sc0000378.1_g000017 Rmu_sc0006008.1_g000006
rosa_roxburghii Rroxscaffold_1G00071360 Rroxscaffold_1G00074380
rosa_rugosa Rorug04G0394100
rosa_samantha Rh5BG018800 Rh5CG016500 Rh5DG017100
rosa_wichuraiana Rw5G001490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 338, 358
AclWI GGATC 4 cut(s) 213, 302, 368, 384
AcsI RAATTY 2 cut(s) 269, 412
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 2 cut(s) 140, 394
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 4 cut(s) 37, 50, 78, 120
AluI AGCT 4 cut(s) 37, 50, 78, 120
Alw21I GWGCWC 2 cut(s) 52, 250
Alw26I GTCTC 1 cut(s) 139
AlwI GGATC 4 cut(s) 213, 302, 368, 384
AlwNI CAGNNNCTG 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 440
ApeKI GCWGC 6 cut(s) 16, 34, 37, 69, 78, 185
ApoI RAATTY 2 cut(s) 269, 412
AspLEI GCGC 2 cut(s) 34, 127
AvaI CYCGRG 1 cut(s) 440
BanII GRGCYC 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 2 cut(s) 52, 250
BbvI GCAGC 6 cut(s) 24, 28, 46, 56, 65, 197
BccI CCATC 2 cut(s) 127, 283
BcgI CGANNNNNNTGC 6 cut(s) 178, 188, 212, 222, 243, 277
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 139
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 2 cut(s) 70, 79
BisI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 186
BlpI GCTNAGC 2 cut(s) 86, 121
BlsI GCNGC 6 cut(s) 18, 36, 39, 71, 80, 187
Bme1390I CCNGG 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 87
Bpu1102I GCTNAGC 2 cut(s) 86, 121
BsaJI CCNNGG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 2 cut(s) 191, 434
BseXI GCAGC 6 cut(s) 24, 28, 46, 56, 65, 197
BsiHKAI GWGCWC 2 cut(s) 52, 250
BsiHKCI CYCGRG 1 cut(s) 440
BsmAI GTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 2 cut(s) 52, 250
Bsp143I GATC 5 cut(s) 205, 241, 307, 360, 376
Bsp1720I GCTNAGC 2 cut(s) 86, 121
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 2 cut(s) 338, 358
BspCNI CTCAG 1 cut(s) 99
BspHI TCATGA 1 cut(s) 451
BspMAI CTGCAG 2 cut(s) 74, 83
BspPI GGATC 4 cut(s) 213, 302, 368, 384
BspQI GCTCTTC 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 5 cut(s) 205, 241, 307, 360, 376
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 13
Bst6I CTCTTC 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 78
BstC8I GCNNGC 3 cut(s) 30, 83, 129
BstDEI CTNAG 2 cut(s) 86, 121
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 187
BstHHI GCGC 2 cut(s) 34, 127
BstKTI GATC 5 cut(s) 208, 244, 310, 363, 379
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 5 cut(s) 205, 241, 307, 360, 376
BstMWI GCNNNNNNNGC 5 cut(s) 25, 34, 75, 78, 87
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 2 cut(s) 131, 203
BstSCI CCNGG 1 cut(s) 11
BstSFI CTRYAG 2 cut(s) 70, 79
BstV1I GCAGC 6 cut(s) 24, 28, 46, 56, 65, 197
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 333
BtgZI GCGATG 2 cut(s) 146, 302
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 3 cut(s) 30, 83, 129
CaiI CAGNNNCTG 1 cut(s) 78
CciI TCATGA 1 cut(s) 451
CfoI GCGC 2 cut(s) 34, 127
Csp6I GTAC 1 cut(s) 103
CviAII CATG 4 cut(s) 128, 200, 334, 452
CviJI RGCY 8 cut(s) 8, 37, 50, 78, 85, 120, 370, 387
CviKI_1 RGCY 8 cut(s) 8, 37, 50, 78, 85, 120, 370, 387
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 2 cut(s) 86, 121
DpnI GATC 5 cut(s) 207, 243, 309, 362, 378
DpnII GATC 5 cut(s) 205, 241, 307, 360, 376
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 52
Eco32I GATATC 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 440
EcoICRI GAGCTC 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 412
EcoRII CCWGG 1 cut(s) 11
EcoRV GATATC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 333
FaeI CATG 4 cut(s) 131, 203, 337, 455
FatI CATG 4 cut(s) 127, 199, 333, 451
Fnu4HI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 186
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 186
FspBI CTAG 1 cut(s) 149
GlaI GCGC 2 cut(s) 33, 126
GluI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 186
HhaI GCGC 2 cut(s) 34, 127
Hin1II CATG 4 cut(s) 131, 203, 337, 455
Hin6I GCGC 2 cut(s) 32, 125
HinP1I GCGC 2 cut(s) 32, 125
HindIII AAGCTT 1 cut(s) 118
HinfI GANTC 2 cut(s) 55, 329
Hpy188I TCNGA 4 cut(s) 54, 213, 418, 466
Hpy188III TCNNGA 3 cut(s) 140, 391, 452
Hpy99I CGWCG 3 cut(s) 103, 112, 213
HpyCH4IV ACGT 1 cut(s) 43
HpyCH4V TGCA 5 cut(s) 40, 72, 81, 185, 199
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 34, 75, 78, 87
HpyF3I CTNAG 2 cut(s) 86, 121
HpySE526I ACGT 1 cut(s) 43
Hsp92II CATG 4 cut(s) 131, 203, 337, 455
HspAI GCGC 2 cut(s) 32, 125
Kzo9I GATC 5 cut(s) 205, 241, 307, 360, 376
LguI GCTCTTC 1 cut(s) 360
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 4 cut(s) 25, 67, 158, 243
Lsp1109I GCAGC 6 cut(s) 24, 28, 46, 56, 65, 197
LweI GCATC 1 cut(s) 172
MaeI CTAG 1 cut(s) 149
MaeII ACGT 1 cut(s) 43
MalI GATC 5 cut(s) 207, 243, 309, 362, 378
MboI GATC 5 cut(s) 205, 241, 307, 360, 376
MboII GAAGA 4 cut(s) 87, 228, 329, 377
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 2 cut(s) 52, 250
MluCI AATT 3 cut(s) 269, 394, 412
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 7 cut(s) 19, 162, 169, 172, 398, 412, 436
MseI TTAA 1 cut(s) 490
MspA1I CMGCKG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 5 cut(s) 25, 34, 75, 78, 87
NcoI CCATGG 1 cut(s) 333
NdeII GATC 5 cut(s) 205, 241, 307, 360, 376
NlaIII CATG 4 cut(s) 131, 203, 337, 455
NspI RCATGY 2 cut(s) 131, 203
PaeI GCATGC 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 440
PagI TCATGA 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 360
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 107
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 6 cut(s) 18, 36, 39, 71, 80, 187
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspXI VCTCGAGB 1 cut(s) 440
PstI CTGCAG 2 cut(s) 74, 83
PstNI CAGNNNCTG 1 cut(s) 78
PsuI RGATCY 1 cut(s) 376
PvuII CAGCTG 1 cut(s) 37
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 490
SatI GCNGC 6 cut(s) 17, 35, 38, 70, 79, 186
Sau3AI GATC 5 cut(s) 205, 241, 307, 360, 376
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 2 cut(s) 52, 250
SetI ASST 7 cut(s) 39, 46, 52, 80, 122, 262, 447
SfaNI GCATC 1 cut(s) 172
SfcI CTRYAG 2 cut(s) 70, 79
Sfr274I CTCGAG 1 cut(s) 440
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SphI GCATGC 1 cut(s) 131
Sse9I AATT 3 cut(s) 269, 394, 412
SsiI CCGC 2 cut(s) 338, 358
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 333
TaiI ACGT 1 cut(s) 46
TaqI TCGA 6 cut(s) 110, 244, 263, 363, 407, 441
TasI AATT 3 cut(s) 269, 394, 412
TfiI GAWTC 1 cut(s) 55
Tru1I TTAA 1 cut(s) 490
Tru9I TTAA 1 cut(s) 490
TseI GCWGC 6 cut(s) 16, 34, 37, 69, 78, 185
TspDTI ATGAA 3 cut(s) 425, 440, 468
TspGWI ACGGA 1 cut(s) 371
XapI RAATTY 2 cut(s) 269, 412
XceI RCATGY 2 cut(s) 131, 203
XhoI CTCGAG 1 cut(s) 440
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.