AT4G04810

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010744
Physical Location & Seq
Forward (+)
2441241 .. 2442785
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04810.1

Sequence Viewer

Length: 420 bp
ATGGCGGATCTTGTGACGGTGGTTAAAAAAACAGAGGAGGAGTGGCGTGCAGTTCTTTCTCCTGAACAGTTTCGGATTCTCCGTCAAAAGGGCACTGAAACGCCGGGAACAGAAGAATATGACAAGTTCTTTGAGGAAGGAATCTTCAGCTGCATCGGATGCAAAACTCCTCTTTATAAATCCACCACGAAGTTTGACGCCGGATGCGGCTGGCCAGCTTTCTTTGAAGGACTCCCCGGTGCCATTAACCGAGCCCCTGATCCAGATGGGAGAAGAACTGAGATCACTTGTGCCGTATGTGATGGACATTTAGGCCATGTTCATAAAGGTGAAGGTTATAGTACTCCAACCGATGAACGCCTTTGTGTTAACAGCGTTTCGATCAATTTTAACCCGGCCAAACCTTCCTCTATAACCTGA

Protein Analysis

139

Amino Acids

15.33

Weight (kDa)

5.39

Isoelectric Point (pI)

46.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 19 - 132 1.8e-41 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca FvH4_4g13910
malus_domestica MD13G1177800.v1.1
prunus_persica Prupe.1G147300_v2.0.a1
pyrus_communis pycom13g15410
rosa_chinensis RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata RLG00000007797
rosa_multiflora Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii Rroxscaffold_5G00362640
rosa_rugosa Rorug04G0161000
rosa_samantha Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana Rw4G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AccB1I GGYRCC 1 cut(s) 239
AciI CCGC 2 cut(s) 5, 207
AclWI GGATC 2 cut(s) 15, 254
AcoI YGGCCR 2 cut(s) 212, 396
AcuI CTGAAG 1 cut(s) 130
AcyI GRCGYC 1 cut(s) 198
AfaI GTAC 1 cut(s) 343
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 2 cut(s) 150, 218
AluI AGCT 2 cut(s) 150, 218
AlwI GGATC 2 cut(s) 15, 254
AoxI GGCC 3 cut(s) 212, 313, 396
ApeKI GCWGC 1 cut(s) 150
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
Asp700I GAANNNNTTC 1 cut(s) 69
AsuC2I CCSGG 3 cut(s) 105, 237, 395
AsuHPI GGTGA 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 95
BalI TGGCCA 1 cut(s) 214
BanI GGYRCC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 260, 296
BceAI ACGGC 1 cut(s) 278
BcnI CCSGG 3 cut(s) 105, 237, 395
BisI GCNGC 2 cut(s) 151, 208
BlsI GCNGC 2 cut(s) 152, 209
BmcAI AGTACT 1 cut(s) 343
Bme1390I CCNGG 3 cut(s) 105, 237, 395
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 105, 237, 395
BmsI GCATC 3 cut(s) 149, 162, 194
BpuMI CCSGG 3 cut(s) 105, 237, 395
BsaHI GRCGYC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 235
BseGI GGATG 2 cut(s) 164, 209
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 270
BseRI GAGGAG 3 cut(s) 50, 53, 159
BseSI GKGCMC 1 cut(s) 95
BseXI GCAGC 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 3 cut(s) 214, 315, 398
BshNI GGYRCC 1 cut(s) 239
BsiSI CCGG 4 cut(s) 104, 201, 237, 395
BslI CCNNNNNNNGG 1 cut(s) 88
BsnI GGCC 3 cut(s) 214, 315, 398
Bsp1286I GDGCHC 2 cut(s) 95, 256
Bsp143I GATC 4 cut(s) 7, 259, 282, 381
BspACI CCGC 2 cut(s) 5, 207
BspANI GGCC 3 cut(s) 214, 315, 398
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 15, 254
BspT107I GGYRCC 1 cut(s) 239
BssECI CCNNGG 1 cut(s) 235
BssMI GATC 4 cut(s) 7, 259, 282, 381
BssNI GRCGYC 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 19, 69
BstACI GRCGYC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 159
BstC8I GCNNGC 3 cut(s) 48, 212, 216
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 164, 209
BstKTI GATC 4 cut(s) 10, 262, 285, 384
BstMBI GATC 4 cut(s) 7, 259, 282, 381
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstSCI CCNGG 3 cut(s) 103, 235, 393
BstSLI GKGCMC 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 3 cut(s) 214, 315, 398
BtsCI GGATG 2 cut(s) 164, 209
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 3 cut(s) 48, 212, 216
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 342
CspCI CAANNNNNGTGG 2 cut(s) 175, 210
CviAII CATG 1 cut(s) 317
CviJI RGCY 7 cut(s) 150, 210, 214, 218, 254, 315, 398
CviKI_1 RGCY 7 cut(s) 150, 210, 214, 218, 254, 315, 398
CviQI GTAC 1 cut(s) 342
DdeI CTNAG 1 cut(s) 279
DpnI GATC 4 cut(s) 9, 261, 284, 383
DpnII GATC 4 cut(s) 7, 259, 282, 381
EaeI YGGCCR 2 cut(s) 212, 396
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 1 cut(s) 320
FaiI YATR 7 cut(s) 120, 177, 298, 318, 324, 339, 413
FatI CATG 1 cut(s) 316
Fnu4HI GCNGC 2 cut(s) 151, 208
FokI GGATG 2 cut(s) 171, 216
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 2 cut(s) 151, 208
GluI GCNGC 2 cut(s) 151, 208
HaeIII GGCC 3 cut(s) 214, 315, 398
HapII CCGG 4 cut(s) 104, 201, 237, 395
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
Hin1II CATG 1 cut(s) 320
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 3 cut(s) 76, 141, 231
HpaI GTTAAC 1 cut(s) 370
HpaII CCGG 4 cut(s) 104, 201, 237, 395
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 2 cut(s) 75, 158
Hpy188III TCNNGA 2 cut(s) 62, 263
Hpy8I GTNNAC 1 cut(s) 370
HpyAV CCTTC 4 cut(s) 131, 221, 326, 414
HpyCH4III ACNGT 2 cut(s) 19, 69
HpyCH4V TGCA 3 cut(s) 50, 153, 162
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 320
KspAI GTTAAC 1 cut(s) 370
Kzo9I GATC 4 cut(s) 7, 259, 282, 381
LpnPI CCDG 9 cut(s) 75, 117, 196, 214, 228, 250, 270, 276, 408
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 3 cut(s) 149, 162, 194
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 9, 261, 284, 383
MboI GATC 4 cut(s) 7, 259, 282, 381
MboII GAAGA 3 cut(s) 125, 136, 285
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 2 cut(s) 95, 256
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 1 cut(s) 385
MluNI TGGCCA 1 cut(s) 214
MlyI GAGTC 1 cut(s) 225
MmeI TCCRAC 1 cut(s) 371
MnlI CCTC 5 cut(s) 28, 31, 127, 180, 418
Mox20I TGGCCA 1 cut(s) 214
MroXI GAANNNNTTC 1 cut(s) 69
MscI TGGCCA 1 cut(s) 214
MseI TTAA 4 cut(s) 24, 246, 369, 390
MslI CAYNNNNRTG 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 214
MspA1I CMGCKG 1 cut(s) 150
MspI CCGG 4 cut(s) 104, 201, 237, 395
MspR9I CCNGG 3 cut(s) 105, 237, 395
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 3 cut(s) 105, 237, 395
NdeII GATC 4 cut(s) 7, 259, 282, 381
NlaIII CATG 1 cut(s) 320
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 13
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 76, 141
PkrI GCNGC 2 cut(s) 152, 209
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PsiI TTATAA 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 7
PvuII CAGCTG 1 cut(s) 150
RsaI GTAC 1 cut(s) 343
RsaNI GTAC 1 cut(s) 342
RseI CAYNNNNRTG 1 cut(s) 327
SaqAI TTAA 4 cut(s) 24, 246, 369, 390
SatI GCNGC 2 cut(s) 151, 208
Sau3AI GATC 4 cut(s) 7, 259, 282, 381
ScaI AGTACT 1 cut(s) 343
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 3 cut(s) 105, 237, 395
SduI GDGCHC 2 cut(s) 95, 256
SetI ASST 6 cut(s) 152, 220, 331, 337, 406, 419
SfaNI GCATC 3 cut(s) 149, 162, 194
SmiMI CAYNNNNRTG 1 cut(s) 327
Sse9I AATT 1 cut(s) 385
SsiI CCGC 2 cut(s) 5, 207
StyD4I CCNGG 3 cut(s) 103, 235, 393
TaaI ACNGT 2 cut(s) 19, 69
TaqI TCGA 1 cut(s) 380
TasI AATT 1 cut(s) 385
TatI WGTACW 1 cut(s) 341
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 2 cut(s) 76, 141
Tru1I TTAA 4 cut(s) 24, 246, 369, 390
Tru9I TTAA 4 cut(s) 24, 246, 369, 390
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 311, 369
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 69
ZrmI AGTACT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.