MD13G1177800.v1.1

methionine sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0010744
Physical Location & Seq
Forward (+)
14765602 .. 14767443
1842 bp
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UTR
Exon/CDS
Intron
MD13G1177800.v1.1.491

Sequence Viewer

Length: 432 bp
ATGGCTGCACCTGCACCTGCACCTGCACCACCAGGGCCATTTCAGAAAACTGAGGAAGAATGGCGGGCTGTTCTCTCCCCGGAACAGTTCAGGATTCTACGCGAGAAAGGAACTGAGCTAAAATTCACTGGGGAATATGACAAGGTTTTTGAAGAAGGGGTTTACAAATGTGCTGGTTGTGGGACACCCCTTTATAAGTCAACTACCAAGTTTGATTCCGGATGCGGTTGGCCTGCATTCTACGAGGGTCTGCCTGGAGCCATAAACCGATCGCCTGACCCAGATGGGAGGAGAACTGAGATCACATGTGCAGCTTGCGGCGGTCACTTGGAACATGTTTTTAAAGGGGAAGGGCACAAGGTGCCGACAGATGAACGCCACTGTGTCAACAGCGTTTCCATCAAGCTTGTTCCTGAAACGTCTGCACTATGA

Protein Analysis

144

Amino Acids

15.58

Weight (kDa)

5.82

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SelR PF01641 25 - 137 3.9e-42 SelR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010744)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04810 AT4G04810 AT4G04830 AT4G04830
fragaria_vesca FvH4_4g13910
malus_domestica MD13G1177800.v1.1
prunus_persica Prupe.1G147300_v2.0.a1
pyrus_communis pycom13g15410
rosa_chinensis RchiOBHm_Chr4g0395581 RchiOBHm_Chr4g0419881
rosa_laevigata RLG00000007797
rosa_multiflora Rmu_sc0000720.1_g000015 Rmu_sc0003990.1_g000001
rosa_roxburghii Rroxscaffold_5G00362640
rosa_rugosa Rorug04G0161000
rosa_samantha Rh4AG222100 Rh4BG224300 Rh4CG235400 Rh4DG221100
rosa_wichuraiana Rw4G019130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 195
AarI CACCTGC 3 cut(s) 19, 25, 31
Acc36I ACCTGC 3 cut(s) 19, 25, 31
AccB1I GGYRCC 1 cut(s) 361
AccII CGCG 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 218
AciI CCGC 4 cut(s) 64, 225, 318, 321
AcsI RAATTY 1 cut(s) 122
AdeI CACNNNGTG 1 cut(s) 361
AflIII ACRYGT 2 cut(s) 305, 334
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 2 cut(s) 31, 253
AluBI AGCT 3 cut(s) 118, 314, 406
AluI AGCT 3 cut(s) 118, 314, 406
Aor13HI TCCGGA 1 cut(s) 218
AoxI GGCC 2 cut(s) 35, 230
ApeKI GCWGC 2 cut(s) 5, 311
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspS9I GGNCC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 323
BccI CCATC 2 cut(s) 278, 407
BciT130I CCWGG 2 cut(s) 33, 255
BcnI CCSGG 1 cut(s) 80
BfuAI ACCTGC 3 cut(s) 19, 25, 31
BisI GCNGC 3 cut(s) 6, 312, 319
BlsI GCNGC 3 cut(s) 7, 313, 320
Bme1390I CCNGG 3 cut(s) 33, 80, 255
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 2 cut(s) 259, 363
BmrFI CCNGG 3 cut(s) 33, 80, 255
BmrI ACTGGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 138
BpmI CTGGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 32, 78
BsaWI WCCGGW 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 133
BseAI TCCGGA 1 cut(s) 218
BseBI CCWGG 2 cut(s) 33, 255
BseDI CCNNGG 2 cut(s) 32, 78
BseGI GGATG 1 cut(s) 227
BseMII CTCAG 3 cut(s) 42, 105, 288
BseNI ACTGG 1 cut(s) 133
BseRI GAGGAG 1 cut(s) 304
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 1 cut(s) 323
BsgI GTGCAG 3 cut(s) 9, 330, 408
Bsh1236I CGCG 1 cut(s) 102
Bsh1285I CGRYCG 1 cut(s) 272
BshFI GGCC 2 cut(s) 37, 232
BshNI GGYRCC 1 cut(s) 361
BsiEI CGRYCG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 80, 219
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BsmI GAATGC 1 cut(s) 236
BsnI GGCC 2 cut(s) 37, 232
Bsp1286I GDGCHC 1 cut(s) 357
Bsp13I TCCGGA 1 cut(s) 218
Bsp143I GATC 2 cut(s) 269, 300
BspACI CCGC 4 cut(s) 64, 225, 318, 321
BspANI GGCC 2 cut(s) 37, 232
BspCNI CTCAG 3 cut(s) 43, 106, 289
BspEI TCCGGA 1 cut(s) 218
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 259, 363
BspMI ACCTGC 3 cut(s) 19, 25, 31
BspT107I GGYRCC 1 cut(s) 361
BsrI ACTGG 1 cut(s) 133
BssECI CCNNGG 2 cut(s) 32, 78
BssMI GATC 2 cut(s) 269, 300
Bst2UI CCWGG 2 cut(s) 33, 255
Bst4CI ACNGT 2 cut(s) 87, 383
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 66, 234, 316
BstDEI CTNAG 3 cut(s) 51, 114, 297
BstF5I GGATG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 102
BstKTI GATC 2 cut(s) 272, 303
BstMBI GATC 2 cut(s) 269, 300
BstMCI CGRYCG 1 cut(s) 272
BstMWI GCNNNNNNNGC 2 cut(s) 11, 361
BstNI CCWGG 2 cut(s) 33, 255
BstNSI RCATGY 2 cut(s) 309, 338
BstSCI CCNGG 3 cut(s) 31, 78, 253
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 1 cut(s) 323
BsuRI GGCC 2 cut(s) 37, 232
BtsCI GGATG 1 cut(s) 227
BtsIMutI CAGTG 2 cut(s) 126, 379
BveI ACCTGC 3 cut(s) 19, 25, 31
Cac8I GCNNGC 3 cut(s) 66, 234, 316
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 2 cut(s) 306, 335
CviJI RGCY 8 cut(s) 5, 37, 68, 118, 232, 260, 314, 406
CviKI_1 RGCY 8 cut(s) 5, 37, 68, 118, 232, 260, 314, 406
DdeI CTNAG 3 cut(s) 51, 114, 297
DpnI GATC 2 cut(s) 271, 302
DpnII GATC 2 cut(s) 269, 300
DraI TTTAAA 1 cut(s) 343
DraIII CACNNNGTG 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 31, 253
FaeI CATG 2 cut(s) 309, 338
FaiI YATR 6 cut(s) 138, 195, 263, 307, 336, 430
FaqI GGGAC 1 cut(s) 196
FatI CATG 2 cut(s) 305, 334
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 6, 312, 319
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 3 cut(s) 6, 312, 319
GluI GCNGC 3 cut(s) 6, 312, 319
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 2 cut(s) 37, 232
HapII CCGG 2 cut(s) 80, 219
Hin1II CATG 2 cut(s) 309, 338
HincII GTYRAC 2 cut(s) 201, 388
HindII GTYRAC 2 cut(s) 201, 388
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 2 cut(s) 94, 215
HpaII CCGG 2 cut(s) 80, 219
Hpy166II GTNNAC 3 cut(s) 163, 201, 388
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 3 cut(s) 91, 219, 413
Hpy8I GTNNAC 3 cut(s) 163, 201, 388
HpyAV CCTTC 2 cut(s) 149, 344
HpyCH4III ACNGT 2 cut(s) 87, 383
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 7 cut(s) 8, 14, 20, 26, 236, 311, 425
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 361
HpyF3I CTNAG 3 cut(s) 51, 114, 297
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 2 cut(s) 309, 338
Kpn2I TCCGGA 1 cut(s) 218
Kzo9I GATC 2 cut(s) 269, 300
LmnI GCTCC 1 cut(s) 257
Lsp1109I GCAGC 1 cut(s) 323
LweI GCATC 1 cut(s) 212
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 271, 302
MboI GATC 2 cut(s) 269, 300
MboII GAAGA 2 cut(s) 68, 164
MhlI GDGCHC 1 cut(s) 357
MluCI AATT 1 cut(s) 122
MnlI CCTC 3 cut(s) 46, 238, 282
MroI TCCGGA 1 cut(s) 218
MseI TTAA 1 cut(s) 342
MspI CCGG 2 cut(s) 80, 219
MspR9I CCNGG 3 cut(s) 33, 80, 255
Mva1269I GAATGC 1 cut(s) 236
MvaI CCWGG 2 cut(s) 33, 255
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 11, 361
NciI CCSGG 1 cut(s) 80
NdeII GATC 2 cut(s) 269, 300
NlaIII CATG 2 cut(s) 309, 338
NlaIV GGNNCC 2 cut(s) 259, 363
NmuCI GTSAC 1 cut(s) 323
NspI RCATGY 2 cut(s) 309, 338
PaqCI CACCTGC 3 cut(s) 19, 25, 31
PciI ACATGT 2 cut(s) 305, 334
PctI GAATGC 1 cut(s) 236
PfeI GAWTC 2 cut(s) 94, 215
PkrI GCNGC 3 cut(s) 7, 313, 320
Ple19I CGATCG 1 cut(s) 272
PscI ACATGT 2 cut(s) 305, 334
PsiI TTATAA 1 cut(s) 195
Psp6I CCWGG 2 cut(s) 31, 253
PspGI CCWGG 2 cut(s) 31, 253
PspN4I GGNNCC 2 cut(s) 259, 363
PspPI GGNCC 1 cut(s) 35
PvuI CGATCG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 6, 312, 319
Sau3AI GATC 2 cut(s) 269, 300
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 3 cut(s) 33, 80, 255
SduI GDGCHC 1 cut(s) 357
SetI ASST 9 cut(s) 13, 19, 25, 120, 147, 316, 363, 408, 422
SfaNI GCATC 1 cut(s) 212
Sse9I AATT 1 cut(s) 122
SsiI CCGC 4 cut(s) 64, 225, 318, 321
StyD4I CCNGG 3 cut(s) 31, 78, 253
TaaI ACNGT 2 cut(s) 87, 383
TaiI ACGT 1 cut(s) 422
TasI AATT 1 cut(s) 122
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 2 cut(s) 94, 215
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 133, 386
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 5, 311
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 387
TspRI CASTG 2 cut(s) 133, 386
XapI RAATTY 1 cut(s) 122
XceI RCATGY 2 cut(s) 309, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.